psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 760 0 0 0 0 0 4 15931 + Seq2144 760 0 760 chr1 62208023 23403938 23420629 5 173,151,114,199,123, 0,173,324,438,637, 23403938,23406292,23408882,23420231,23420506, 755 5 0 0 0 0 4 13535 + Seq2144 760 0 760 chr1 62208023 24167843 24182138 5 173,151,114,199,123, 0,173,324,438,637, 24167843,24171207,24173791,24181740,24182015, 946 0 0 0 0 0 0 0 - Seq2145 946 0 946 chr1 62208023 23402845 23403791 1 946, 0, 23402845, 941 5 0 0 0 0 0 0 - Seq2145 946 0 946 chr1 62208023 24166750 24167696 1 946, 0, 24166750, 832 29 0 0 3 4 5 349 + Seq2146 865 0 865 chr1 62208023 18738706 18739916 9 13,203,108,57,24,150,162,113,31, 0,13,216,324,381,406,556,720,834, 18738706,18738720,18739007,18739192,18739340,18739364,18739610,18739772,18739885, 865 0 0 0 0 0 4 348 + Seq2146 865 0 865 chr1 62208023 23357551 23358764 5 216,108,57,175,309, 0,216,324,381,556, 23357551,23357852,23358036,23358184,23358455, 258 7 0 0 1 2 0 0 + Seq2146 865 598 865 chr10 36600514 14211123 14211388 2 114,151, 598,714, 14211123,14211237, 754 26 0 0 4 85 4 303 + Seq2146 865 0 865 chr12 35164833 6939846 6940929 8 216,27,58,68,104,166,110,31, 0,216,323,381,452,556,723,834, 6939846,6940146,6940205,6940354,6940422,6940622,6940788,6940898, 847 14 0 0 3 3 4 351 + Seq2146 865 1 865 chr15 36481277 11012027 11013239 7 215,106,58,25,149,163,145, 1,216,323,381,407,556,720, 11012027,11012326,11012512,11012661,11012686,11012931,11013094, 530 40 0 0 6 70 9 318 + Seq2146 865 225 865 chr15 36481277 15870612 15871500 10 99,47,157,78,9,61,5,56,48,10, 225,324,396,559,638,647,715,720,779,855, 15870612,15870790,15870953,15871206,15871286,15871298,15871363,15871370,15871430,15871490, 853 11 0 0 1 1 4 349 + Seq2146 865 0 865 chr15 36481277 25262109 25263322 5 216,106,58,175,309, 0,216,323,381,556, 25262109,25262410,25262593,25262742,25263013, 855 9 0 0 1 1 4 349 + Seq2146 865 0 865 chr17 42274751 18041296 18042509 5 216,106,58,175,309, 0,216,323,381,556, 18041296,18041597,18041780,18041929,18042200, 784 25 0 0 5 56 6 408 + Seq2146 865 0 865 chr18 47708464 23181338 23182555 9 16,200,21,35,58,172,157,119,31, 0,16,216,287,323,381,555,714,834, 23181338,23181382,23181667,23181724,23181838,23181987,23182248,23182405,23182524, 830 27 0 0 4 8 5 350 + Seq2146 865 0 865 chr2 52075710 32016850 32018057 8 216,106,58,108,63,162,113,31, 0,216,323,381,493,556,720,834, 32016850,32017150,32017334,32017483,32017591,32017750,32017913,32018026, 860 4 0 0 1 1 4 349 + Seq2146 865 0 865 chr20 59369745 20660212 20661425 5 216,106,58,175,309, 0,216,323,381,556, 20660212,20660513,20660696,20660845,20661116, 297 15 0 0 3 54 4 188 + Seq2146 865 5 371 chr22 36734202 25594594 25595094 5 83,9,106,90,24, 5,88,110,231,347, 25594594,25594678,25594698,25594903,25595070, 106 1 0 0 0 0 0 0 + Seq2146 865 0 107 chr23 42830282 11950056 11950163 1 107, 0, 11950056, 859 6 0 0 0 0 4 344 + Seq2146 865 0 865 chr25 26206622 5774762 5775971 5 216,108,57,175,309, 0,216,324,381,556, 5774762,5775063,5775246,5775394,5775662, 843 18 0 0 2 4 4 349 + Seq2146 865 0 865 chr9 44268068 24291729 24292939 6 216,106,58,175,296,10, 0,216,323,381,556,855, 24291729,24292030,24292213,24292362,24292633,24292929, 838 22 0 0 4 5 5 351 + Seq2146 865 0 865 chr9 44268068 35373618 35374829 8 12,203,106,58,174,163,113,31, 0,13,216,323,381,555,720,834, 35373618,35373633,35373920,35374104,35374253,35374522,35374685,35374798, 401 30 0 0 2 7 2 98 + Seq2146 865 396 834 chrUn 173451396 22717868 22718397 3 156,153,122, 396,555,712, 22717868,22718117,22718275, 833 24 0 0 5 7 4 346 + Seq2146 865 1 865 chrUn 173451396 65035823 65037026 8 215,106,58,25,146,157,119,31, 1,216,323,381,407,555,714,834, 65035823,65036122,65036307,65036456,65036481,65036719,65036876,65036995, 851 13 0 0 1 1 4 348 - Seq2146 865 0 865 chr1 62208023 6942567 6943779 5 309,175,58,106,216, 0,309,484,543,649, 6942567,6942972,6943238,6943372,6943563, 848 16 0 0 1 1 4 350 - Seq2146 865 0 865 chr1 62208023 15181878 15183092 5 309,175,58,106,216, 0,309,484,543,649, 15181878,15182283,15182549,15182686,15182876, 742 41 0 0 3 69 4 367 - Seq2146 865 13 865 chr1 62208023 20749096 20750246 6 24,281,112,58,105,203, 0,29,372,484,544,649, 20749096,20749120,20749511,20749714,20749854,20750043, 836 25 0 0 2 4 4 710 - Seq2146 865 0 865 chr10 36600514 8000669 8002240 6 10,296,175,58,106,216, 0,13,309,484,543,649, 8000669,8000679,8001071,8001337,8001472,8002024, 800 32 0 0 5 16 6 362 - Seq2146 865 0 848 chr10 36600514 7995192 7996386 10 14,119,148,67,38,66,58,106,203,13, 17,32,161,309,377,418,484,543,649,852, 7995192,7995206,7995333,7995577,7995644,7995682,7995839,7995978,7996168,7996373, 176 0 0 0 0 0 0 0 - Seq2146 865 40 216 chr10 36600514 8001663 8001839 1 176, 649, 8001663, 826 26 0 0 3 13 4 363 - Seq2146 865 0 865 chr14 59999824 16512961 16514176 7 145,162,175,58,105,5,202, 0,147,309,484,543,658,663, 16512961,16513106,16513364,16513630,16513770,16513875,16513974, 833 28 0 0 3 4 5 349 - Seq2146 865 0 865 chr16 42763181 38613529 38614739 7 31,113,162,175,58,106,216, 0,32,147,309,484,543,649, 38613529,38613560,38613674,38613931,38614197,38614333,38614523, 854 10 0 0 1 1 4 349 - Seq2146 865 0 865 chr18 47708464 14087089 14088302 5 309,175,58,106,216, 0,309,484,543,649, 14087089,14087494,14087760,14087895,14088086, 833 21 0 0 3 11 9 401 - Seq2146 865 0 865 chr18 47708464 33202157 33203412 11 24,155,104,16,175,19,38,108,203,7,5, 0,29,184,293,309,484,503,541,649,853,860, 33202157,33202181,33202337,33202444,33202556,33202822,33202884,33203000,33203192,33203398,33203407, 843 18 0 0 2 4 4 349 - Seq2146 865 0 865 chr2 52075710 3730394 3731604 6 10,296,175,58,106,216, 0,13,309,484,543,649, 3730394,3730404,3730796,3731062,3731197,3731388, 846 16 0 0 2 2 5 349 - Seq2146 865 1 865 chr2 52075710 21776007 21777218 7 153,156,175,27,30,106,215, 0,153,309,484,512,543,649, 21776007,21776161,21776413,21776679,21776706,21776812,21777003, 712 40 0 0 3 19 4 353 - Seq2146 865 63 834 chr20 59369745 2617875 2618980 5 279,161,58,101,153, 31,312,484,548,649, 2617875,2618246,2618499,2618637,2618827, 764 41 0 0 4 24 6 359 - Seq2146 865 5 834 chr21 40848751 27842036 27843200 7 279,161,34,24,101,193,13, 31,312,484,518,548,649,847, 27842036,27842407,27842660,27842695,27842799,27842990,27843187, 520 40 0 0 5 42 8 305 - Seq2146 865 225 827 chr22 36734202 25322876 25323741 9 48,56,5,61,8,80,157,48,97, 38,89,145,157,218,226,312,494,543, 25322876,25322928,25322986,25322995,25323059,25323068,25323244,25323517,25323644, 851 13 0 0 1 1 4 349 - Seq2146 865 0 865 chr22 36734202 29965448 29966661 5 309,175,58,106,216, 0,309,484,543,649, 29965448,29965853,29966119,29966254,29966445, 758 44 0 0 8 56 10 399 - Seq2146 865 7 865 chr22 36734202 31781376 31782577 12 13,6,121,153,157,17,22,11,90,3,128,81, 0,23,31,157,312,502,520,543,556,646,649,777, 31781376,31781406,31781415,31781540,31781785,31782062,31782083,31782179,31782190,31782325,31782367,31782496, 755 44 0 0 9 59 9 402 - Seq2146 865 7 865 chr22 36734202 32149096 32150297 11 13,6,121,153,157,17,22,11,90,128,81, 0,23,31,157,312,502,520,543,556,649,777, 32149096,32149126,32149135,32149260,32149505,32149782,32149803,32149899,32149910,32150087,32150216, 751 11 0 0 1 103 4 356 - Seq2146 865 0 865 chr25 26206622 8658992 8660110 5 206,175,57,108,216, 0,309,484,541,649, 8658992,8659300,8659566,8659701,8659894, 854 8 0 0 2 3 4 348 - Seq2146 865 0 865 chr3 44795238 23077468 23078678 6 121,186,175,58,106,216, 0,123,309,484,543,649, 23077468,23077589,23077871,23078137,23078271,23078462, 847 11 0 0 3 7 5 321 - Seq2146 865 0 865 chr7 62518191 8787234 8788413 7 31,278,150,25,52,106,216, 0,31,309,460,490,543,649, 8787234,8787266,8787640,8787790,8787877,8788005,8788197, 802 13 0 0 4 50 7 667 - Seq2146 865 0 865 chrNA 318297480 41625876 41627358 9 31,120,156,6,170,20,106,13,193, 0,31,153,309,315,522,543,649,672, 41625876,41625909,41626029,41626281,41626579,41626855,41626953,41627143,41627165, 47 1 0 0 0 0 0 0 - Seq2146 865 555 603 chrNA 318297480 41626436 41626484 1 48, 262, 41626436, 214 16 0 0 1 2 1 84 - Seq2146 865 89 321 chrNA 318297480 45899214 45899528 3 105,72,53, 544,649,723, 45899214,45899403,45899475, 700 43 0 0 12 117 10 426 - Seq2146 865 5 865 chrNA 318297480 304045290 304046459 14 18,36,11,52,53,32,57,153,22,21,90,106,9,83, 0,38,75,93,148,215,248,316,496,521,544,649,768,777, 304045290,304045312,304045348,304045367,304045421,304045474,304045506,304045664,304045935,304045961,304046060,304046249,304046366,304046376, 414 30 0 0 3 25 3 112 - Seq2146 865 396 865 chrNA 318297480 305575123 305575679 4 13,122,153,156, 0,31,157,313, 305575123,305575150,305575277,305575523, 794 24 0 0 6 47 7 403 - Seq2146 865 0 865 chrUn 173451396 166778849 166780070 9 16,6,121,135,164,57,103,200,16, 0,23,31,153,309,484,541,649,849, 166778849,166778875,166778884,166779005,166779258,166779524,166779658,166779850,166780054, 1828 0 0 0 0 0 6 42608 + Seq2374 1828 0 1828 chr1 62208023 50637802 50682238 7 201,152,114,182,106,135,938, 0,201,353,467,649,755,890, 50637802,50655900,50662520,50669223,50670090,50676922,50681300,