MEME version 3.0 (Release date: 2002/04/02 00:11:59)
For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.sdsc.edu.
This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.sdsc.edu.
If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
DATAFILE= agr3_sub.fasta ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ A.thaliana 1.0000 865 C.elegans 1.0000 729 D.melanogaster 1.0000 808 H.sapiens 1.0000 786 A.aeolicus 1.0000 692 M.thermoautotrophicum 1.0000 677 B.subtilis 1.0000 689 D.radiodaurans 1.0000 690 M.tuberculosis 1.0000 673 A.fulgidus 1.0000 642 A.pernix 1.0000 681 Hthio 1.0000 105
This information can also be useful in the event you wish to report a problem with the MEME software. command: meme agr3_sub.fasta -protein -nmotifs 10 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 12 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 em: prior= megap b= 40185 maxiter= 50 distance= 1e-05 data: n= 8037 N= 12 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.092 C 0.013 D 0.061 E 0.080 F 0.044 G 0.072 H 0.028 I 0.039 K 0.053 L 0.102 M 0.024 N 0.031 P 0.047 Q 0.032 R 0.059 S 0.062 T 0.045 V 0.059 W 0.018 Y 0.038 Background letter frequencies (from dataset with add-one prior applied): A 0.092 C 0.013 D 0.061 E 0.080 F 0.044 G 0.071 H 0.029 I 0.039 K 0.053 L 0.102 M 0.024 N 0.031 P 0.047 Q 0.032 R 0.059 S 0.062 T 0.045 V 0.059 W 0.018 Y 0.038
BL MOTIF 1 width=50 seqs=11 A.aeolicus ( 15) YLRQHAYNPVDWYPWGEEAFKKAKEEDKPIFLSIGYSTCHWCHVMEKESF 1 D.melanogaster ( 86) YLLQHAYNPVDWYPWGEEAFEKARSENKIIFLSVGYSTCHWCHVMEHESF 1 A.thaliana ( 170) YLLQHAHNPVDWYPWGEEAFEEARKRDVPIFLSIGYSTCHWCHVMEVESF 1 C.elegans ( 27) YLLQHANNPIDWYPWGQEAFQKAKDNNKPIFLSVGYSTCHWCHVMEKESF 1 H.sapiens ( 72) YLLQHAYNPVDWYPWGQEAFDKARKENKPIFLSVGYSTCHWCHMMEEESF 1 B.subtilis ( 17) YLLQHAHNPVDWFPWGEEAFEKAKRENKPVLVSIGYSTCHWCHVMAHESF 1 M.thermoautotrophicum ( 16) YLLQHAHNPVNWYPWGDDAFRKALAERKPIFLSIGYSTCHWCHVMARESF 1 D.radiodaurans ( 26) YLLQHQDNPVDWWPWSPEAFAEARQRDVPVLLSVGYSTCHWCHVMAHESF 1 A.pernix ( 13) YLRQHSCDPVDWMPWGAEAFEKARRLDKPVFVSVGYSSCHWCHVMQRESF 1 A.fulgidus ( 12) YLRKAANQPVEWFEWGEEAFAKAKKEDKPILLSIGGVWCHWCHVMAKESF 1 M.tuberculosis ( 19) YLRQHADNPVHWQQWTPQALAEAAARAVPILLSVGYAACHWCHVMAHESF 1 //
log-odds matrix: alength= 20 w= 50 n= 7449 bayes= 9.29983 E= 7.7e-351 -629 -449 -625 -694 -206 -567 -359 -500 -600 -514 -501 -484 -573 -506 -576 -554 -548 -544 -305 466 -458 -330 -584 -554 -253 -540 -465 -136 -481 318 -111 -465 -478 -381 -468 -473 -379 -241 -419 -408 -440 -354 -560 -493 -281 -507 -396 -178 -222 257 -165 -387 -499 -291 242 -435 -370 -281 -424 -380 -295 -256 -368 -160 -422 -423 -47 -306 -77 -296 -165 -181 -317 468 -200 -269 -258 -338 -338 -404 -73 -243 -310 -377 -278 -373 481 -377 -367 -371 -282 -78 -372 -62 -233 -240 -258 -360 -312 -123 303 -42 -378 -361 -327 -182 -356 -231 -314 -313 -218 -265 -395 28 -342 27 -160 -125 -372 -381 -307 226 126 -246 -203 -247 335 -354 -217 -391 -315 229 -335 -118 -262 -158 -203 -362 -327 245 -390 -258 -142 -426 -376 -348 -109 -262 -288 -421 -321 476 -370 -94 -351 -151 -211 -348 -355 -358 -362 -395 -470 -485 -520 -456 -448 -454 -414 -499 -474 -410 434 -371 -458 -356 -368 -453 -559 -549 -198 -152 -439 -430 -318 -450 -384 132 -387 -227 -200 -356 -388 -368 -391 -356 -175 374 -470 -448 -352 -310 380 -91 -421 -370 -97 -347 -361 -448 -370 24 -444 -295 -393 -295 -330 -366 -425 -384 -450 -294 -445 -471 -164 -438 -391 -364 -401 -295 -304 -346 -455 -339 -391 -407 -379 -363 569 -196 -214 -135 -297 -291 192 -328 -8 -160 -239 -213 82 -191 -289 39 -258 -180 -205 -192 130 374 -195 -266 -307 -68 -379 -332 -302 -291 -244 -342 -310 -252 404 57 -301 -192 -206 -289 -458 -423 -450 -294 -445 -471 -164 -438 -391 -364 -401 -295 -304 -346 -455 -339 -391 -407 -379 -363 569 -196 -224 -266 -293 -380 -462 356 -354 -398 -315 -507 -379 -182 -387 -330 -342 -52 -37 -377 -417 -429 -17 -509 76 248 -543 -361 -302 -375 -166 -433 -341 -196 155 227 -313 -256 -248 -344 -567 -459 -426 -514 -88 351 -609 -482 -433 -456 -373 -576 -488 -321 -503 -51 -490 -430 -415 -480 -606 -574 334 -190 -520 -529 -477 -310 -489 -392 -482 -474 -387 -398 -461 -427 -490 -208 -284 -295 -506 -517 -369 -183 -459 -472 427 -467 -400 -174 -428 -115 -187 -367 -395 -405 -470 -313 -364 -248 -218 -79 116 -310 58 201 -367 -278 -180 -269 80 -324 -226 -94 -261 144 41 -145 -140 -259 -397 -304 -323 -403 -198 165 -535 -383 -263 -375 356 -422 -339 -195 -382 -98 -115 -288 -270 -374 -479 -424 334 -190 -520 -529 -477 -310 -489 -392 -482 -474 -387 -398 -461 -427 -490 -208 -284 -295 -506 -517 -22 -343 -393 -277 -486 -380 -204 -327 271 -39 -284 -185 -389 -69 275 -270 -237 -339 -412 -367 62 -224 37 32 -284 -221 -110 -204 197 -259 -159 -30 -214 144 121 53 -74 -201 -316 -226 -236 -331 -142 248 -411 -306 -198 -297 -41 -47 -259 134 -305 -53 190 -186 -180 -293 -417 -335 -35 -332 292 -191 -457 -236 -206 -418 -208 -484 -407 318 -354 -179 22 -159 -215 -420 -488 -371 -359 -324 -456 -364 -457 -427 -298 -203 366 -367 -314 -266 -447 -171 -119 -335 -294 192 -462 -413 -206 -272 -335 -333 -384 -343 -316 32 -263 -346 -316 -271 413 -221 -317 -205 -218 -289 -465 -430 -346 -239 -476 -490 -297 -498 -484 410 -403 -115 -111 -357 -482 -395 -469 -380 -252 188 -450 -373 -467 -308 -637 -629 374 -595 -420 -105 -560 170 -94 -490 -528 -435 -549 -494 -406 -230 -299 -184 -382 -257 -558 -502 -190 -528 -427 -36 -431 291 -46 -418 -442 -330 -423 -421 -303 114 -371 -358 -342 -304 -513 -597 -539 -422 -503 -512 -497 -581 -497 -337 -472 -466 -509 395 -152 -498 -552 -531 -362 -234 -614 -609 -359 -592 -625 347 -548 -221 -214 -487 -565 -538 -612 -502 -289 309 -592 -492 -305 -339 -351 -439 -512 371 -406 -458 -372 -560 -441 -245 -441 -389 -396 -297 -381 -448 -462 -479 -473 -377 -534 -591 -154 26 -296 -440 -515 -468 -438 -396 -521 -445 -514 -432 -451 -469 -275 450 0 -140 -430 -478 -422 -269 -409 -342 -378 -442 -336 -215 -345 -337 -390 358 -5 17 -464 -434 -60 -166 -376 -427 -378 -382 -345 -211 -296 -390 -219 -140 -367 -244 -332 71 395 -215 136 -416 -412 622 -547 -532 -490 -545 -493 -369 -525 -498 -394 -439 -534 -470 -501 -446 -360 -456 -581 -556 -590 -435 -506 -588 -464 -526 508 -578 -561 -567 -502 -304 -525 -290 -447 -473 -477 -577 -486 -333 -450 -294 -445 -471 -164 -438 -391 -364 -401 -295 -304 -346 -455 -339 -391 -407 -379 -363 569 -196 -412 622 -547 -532 -490 -545 -493 -369 -525 -498 -394 -439 -534 -470 -501 -446 -360 -456 -581 -556 -590 -435 -506 -588 -464 -526 508 -578 -561 -567 -502 -304 -525 -290 -447 -473 -477 -577 -486 -333 -197 -153 -437 -428 -298 -443 -377 41 -383 -208 105 -352 -384 -359 -386 -348 -175 373 -449 -429 -485 -314 -550 -581 -411 -531 -496 -219 -483 -241 528 -444 -505 -452 -556 -455 -404 -320 -368 -367 194 -474 -78 248 -559 -361 -315 -384 -174 -443 -352 -205 -331 144 -319 -260 -256 -349 -581 -475 -278 -318 -301 9 -430 -340 328 -301 232 -344 -256 -144 -343 -54 160 -217 -196 32 -392 -332 -526 -501 -235 360 -611 -528 -478 -478 -538 -632 -548 -368 -619 -334 -570 -517 -496 -538 -603 -600 -342 -304 -513 -597 -539 -422 -503 -512 -497 -581 -497 -337 -472 -466 -509 395 -152 -498 -552 -531 -413 -228 -494 -515 435 -491 -414 -228 -468 -224 -241 -402 -432 -440 -502 -356 -405 -299 -254 -113
letter-probability matrix: alength= 20 w= 50 n= 7449 E= 7.7e-351 0.001177 0.000575 0.000799 0.000651 0.010620 0.001403 0.002368 0.001223 0.000830 0.002889 0.000747 0.001100 0.000889 0.000951 0.001092 0.001319 0.001017 0.001369 0.002122 0.966858 0.003856 0.001311 0.001061 0.001716 0.007685 0.001692 0.001140 0.015312 0.001898 0.925676 0.011130 0.001250 0.001719 0.002266 0.002306 0.002313 0.003280 0.011166 0.000963 0.002260 0.004349 0.001108 0.001254 0.002622 0.006340 0.002124 0.001830 0.011432 0.011423 0.606771 0.007651 0.002142 0.001484 0.004238 0.316594 0.003009 0.003484 0.008476 0.000930 0.002739 0.011896 0.002182 0.004723 0.026366 0.002378 0.003814 0.020602 0.004690 0.031136 0.013143 0.007685 0.008964 0.005243 0.815512 0.014833 0.009507 0.007587 0.005717 0.001692 0.002328 0.055346 0.002391 0.007068 0.005851 0.006466 0.005404 0.802381 0.002874 0.004170 0.007783 0.003419 0.018312 0.003589 0.020728 0.011762 0.011634 0.007568 0.004878 0.002024 0.016351 0.750979 0.009645 0.004420 0.006551 0.004610 0.020212 0.002416 0.007936 0.006038 0.011664 0.005313 0.005013 0.003059 0.038642 0.005543 0.074016 0.014910 0.024966 0.001341 0.002726 0.010971 0.062020 0.144897 0.014472 0.010846 0.012896 0.290547 0.003382 0.011765 0.006766 0.002709 0.153592 0.004614 0.014032 0.009633 0.020650 0.011098 0.004842 0.001833 0.208435 0.006180 0.002151 0.022624 0.004173 0.003288 0.006426 0.013394 0.006401 0.007235 0.005516 0.002598 0.852453 0.003635 0.016564 0.005191 0.021627 0.010526 0.005310 0.001505 0.003203 0.007507 0.000833 0.002329 0.002772 0.001213 0.003031 0.001278 0.001681 0.003014 0.003215 0.000898 0.001827 0.952984 0.002427 0.002472 0.005202 0.003528 0.002572 0.000367 0.000849 0.023316 0.004492 0.002896 0.004049 0.004911 0.003151 0.001987 0.097958 0.003636 0.021224 0.006012 0.002666 0.003211 0.002485 0.003927 0.005234 0.013475 0.792977 0.000680 0.001713 0.008016 0.001504 0.843282 0.042477 0.002396 0.005486 0.014550 0.003552 0.004340 0.004577 0.001852 0.036957 0.002168 0.004105 0.003886 0.007974 0.004604 0.004685 0.000928 0.002661 0.004066 0.001685 0.002785 0.003040 0.014246 0.003433 0.001897 0.003142 0.003287 0.013223 0.002922 0.002854 0.002010 0.003025 0.003932 0.003667 0.003277 0.004807 0.912886 0.009816 0.020824 0.005054 0.007770 0.010654 0.168123 0.007345 0.026984 0.012898 0.010129 0.023228 0.042552 0.008356 0.006369 0.041748 0.009911 0.017688 0.010929 0.015642 0.043477 0.510319 0.023899 0.002048 0.007203 0.049888 0.003212 0.007168 0.003527 0.005212 0.009810 0.009538 0.002814 0.005488 0.777858 0.047029 0.007356 0.016272 0.010891 0.008009 0.000735 0.002042 0.004066 0.001685 0.002785 0.003040 0.014246 0.003433 0.001897 0.003142 0.003287 0.013223 0.002922 0.002854 0.002010 0.003025 0.003932 0.003667 0.003277 0.004807 0.912886 0.009816 0.019431 0.002043 0.007978 0.005715 0.001801 0.841433 0.002463 0.002487 0.005976 0.003035 0.001741 0.008892 0.003217 0.003218 0.005540 0.042801 0.034954 0.004343 0.000980 0.001951 0.081981 0.000380 0.103024 0.445538 0.001032 0.005850 0.003522 0.002911 0.016756 0.005084 0.002269 0.008057 0.138037 0.152794 0.006786 0.010441 0.008122 0.005478 0.000345 0.001593 0.004819 0.000365 0.033089 0.910891 0.000654 0.002526 0.001419 0.001659 0.003991 0.001885 0.000816 0.003391 0.001441 0.022287 0.001987 0.003129 0.002546 0.002124 0.000264 0.000715 0.934277 0.003453 0.001652 0.002034 0.001627 0.008312 0.000966 0.002595 0.001884 0.003818 0.001642 0.001989 0.001934 0.001647 0.001984 0.014593 0.006327 0.007678 0.000527 0.001062 0.007156 0.003634 0.002520 0.003030 0.854939 0.002809 0.001789 0.011703 0.002727 0.046028 0.006608 0.002463 0.003043 0.001912 0.002284 0.007040 0.003622 0.010607 0.003899 0.022185 0.205412 0.001504 0.091012 0.321456 0.003482 0.010379 0.008210 0.006065 0.092524 0.010772 0.005011 0.016336 0.007704 0.086282 0.078567 0.022518 0.017124 0.009874 0.001126 0.004640 0.009808 0.000789 0.015428 0.250339 0.001091 0.005010 0.004623 0.002918 0.625425 0.005465 0.002300 0.008101 0.003351 0.016158 0.026720 0.008375 0.006981 0.004452 0.000638 0.002027 0.934277 0.003453 0.001652 0.002034 0.001627 0.008312 0.000966 0.002595 0.001884 0.003818 0.001642 0.001989 0.001934 0.001647 0.001984 0.014593 0.006327 0.007678 0.000527 0.001062 0.079065 0.001199 0.003986 0.011708 0.001527 0.005134 0.006938 0.004063 0.347091 0.077780 0.003356 0.008739 0.003187 0.019694 0.398655 0.009448 0.008738 0.005678 0.001016 0.002996 0.141844 0.002730 0.078480 0.099845 0.006186 0.015451 0.013314 0.009525 0.207899 0.016982 0.008012 0.025587 0.010712 0.085913 0.136564 0.089193 0.027085 0.014729 0.001973 0.007977 0.017883 0.001300 0.022676 0.446666 0.002577 0.008583 0.007212 0.005002 0.040013 0.073884 0.003994 0.079459 0.005697 0.022076 0.220422 0.016994 0.013052 0.007790 0.000981 0.003739 0.072427 0.001295 0.459270 0.021189 0.001873 0.013956 0.006836 0.002159 0.012525 0.003569 0.001430 0.283770 0.004066 0.009170 0.069084 0.020390 0.010228 0.003237 0.000598 0.002928 0.007640 0.001366 0.002567 0.006406 0.001869 0.003718 0.003621 0.009597 0.669801 0.007996 0.002735 0.004957 0.002129 0.009705 0.026002 0.006021 0.005906 0.225064 0.000718 0.002182 0.022018 0.001958 0.005959 0.007940 0.003104 0.006626 0.003190 0.049040 0.008609 0.009292 0.002696 0.004814 0.825757 0.006850 0.006591 0.014885 0.010002 0.008019 0.000702 0.001946 0.008386 0.002457 0.002239 0.002667 0.005663 0.002258 0.000998 0.672589 0.003248 0.046110 0.011120 0.002639 0.001673 0.002056 0.002288 0.004418 0.007894 0.217635 0.000781 0.002878 0.003614 0.001531 0.000733 0.001021 0.592082 0.001157 0.001558 0.019006 0.001094 0.330870 0.012520 0.001049 0.001211 0.001562 0.001314 0.002008 0.002709 0.012061 0.002212 0.010687 0.006511 0.002169 0.001269 0.002459 0.011931 0.001842 0.001479 0.030533 0.002684 0.767097 0.017563 0.001728 0.002200 0.003229 0.003150 0.003323 0.005540 0.130764 0.001342 0.003188 0.008605 0.001564 0.001727 0.001270 0.001060 0.003846 0.000873 0.001124 0.001695 0.001818 0.000768 0.003028 0.001794 0.001254 0.001737 0.948784 0.015830 0.001876 0.000384 0.000961 0.007507 motif=2 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 12, iter= 0 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 12, iter= 0 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 0.002557 0.000859 0.001170 0.003700 0.001179 0.000374 0.435214 0.001188 0.022028 0.005468 0.001073 0.000940 0.000765 0.000850 0.001895 0.006102 0.505575 0.000291 0.001264 0.011150 0.001229 0.005337 0.003796 0.001274 0.936810 0.001712 0.001643 0.004026 0.002105 0.001130 0.005748 0.002224 0.002138 0.003795 0.007883 0.003238 0.002662 0.000716 0.001385 0.003462 0.000949 0.001494 0.001327 0.015298 0.085666 0.003669 0.001858 0.001498 0.003988 0.001159 0.002013 0.001270 0.001450 0.001678 0.003091 0.001992 0.002302 0.002617 0.863218 0.092129 0.004892 0.003083 0.002906 0.002387 0.011063 0.001680 0.003662 0.003873 0.004770 0.002339 0.007099 0.004315 0.003081 0.003967 0.735620 0.043875 0.066663 0.000709 0.001888 0.060657 0.004088 0.004491 0.004144 0.003240 0.005076 0.002620 0.009097 0.006816 0.006857 0.005264 0.011920 0.003717 0.005839 0.005918 0.100514 0.698915 0.013391 0.045299 0.002136 0.005301 0.962160 0.001365 0.001992 0.001492 0.001638 0.000936 0.003034 0.001396 0.003225 0.001571 0.001497 0.001165 0.001223 0.001836 0.002802 0.003736 0.002507 0.000314 0.000809 0.001543 0.000634 0.001822 0.001359 0.001788 0.001871 0.964981 0.000713 0.001090 0.002008 0.000740 0.003807 0.001236 0.004256 0.002681 0.002326 0.001656 0.001089 0.000607 0.003792 0.004066 0.001685 0.002785 0.003040 0.014246 0.003433 0.001897 0.003142 0.003287 0.013223 0.002922 0.002854 0.002010 0.003025 0.003932 0.003667 0.003277 0.004807 0.912886 0.009816 0.005301 0.962160 0.001365 0.001992 0.001492 0.001638 0.000936 0.003034 0.001396 0.003225 0.001571 0.001497 0.001165 0.001223 0.001836 0.002802 0.003736 0.002507 0.000314 0.000809 0.001543 0.000634 0.001822 0.001359 0.001788 0.001871 0.964981 0.000713 0.001090 0.002008 0.000740 0.003807 0.001236 0.004256 0.002681 0.002326 0.001656 0.001089 0.000607 0.003792 0.023561 0.004461 0.002928 0.004119 0.005613 0.003325 0.002087 0.052049 0.003742 0.024128 0.049941 0.002732 0.003299 0.002634 0.004076 0.005533 0.013481 0.789562 0.000784 0.001947 0.003186 0.001465 0.001339 0.001422 0.002571 0.001805 0.000918 0.008590 0.001862 0.019247 0.935892 0.001443 0.001421 0.001389 0.001257 0.002623 0.002760 0.006436 0.001371 0.003003 0.352609 0.000483 0.035245 0.446178 0.000924 0.005864 0.003211 0.002734 0.015911 0.004726 0.002092 0.007570 0.004770 0.086331 0.006484 0.010153 0.007695 0.005282 0.000314 0.001422 0.013424 0.001424 0.007532 0.084854 0.002259 0.006785 0.278245 0.004860 0.265178 0.009411 0.004077 0.011547 0.004388 0.021891 0.179494 0.013686 0.011651 0.074295 0.001166 0.003834 0.002410 0.000400 0.011890 0.964409 0.000643 0.001843 0.001040 0.001432 0.001277 0.001274 0.000540 0.002458 0.000645 0.003146 0.001143 0.001708 0.001452 0.001420 0.000270 0.000599 0.008605 0.001564 0.001727 0.001270 0.001060 0.003846 0.000873 0.001124 0.001695 0.001818 0.000768 0.003028 0.001794 0.001254 0.001737 0.948784 0.015830 0.001876 0.000384 0.000961 0.005258 0.002657 0.001971 0.002253 0.903964 0.002384 0.001617 0.008082 0.002074 0.021639 0.004525 0.001935 0.002366 0.001507 0.001823 0.005204 0.002728 0.007489 0.003031 0.017490
Time 27.00 secs.
BL MOTIF 2 width=50 seqs=11 B.subtilis ( 79) FVAIKVDREERPDVDSVYMRICQLMTGQGGWPLNVFITPDQKPFYAGTYF 1 D.radiodaurans ( 88) FVNIKVDREERPDVDAVYMAATQALTGQGGWPMTVFLTPDAEPFYAGTYF 1 M.thermoautotrophicum ( 78) FVSVKVDREERPDIDAIYMRVCQMMTGAGGWPLTIIMTPEGEPFFAGTYF 1 A.aeolicus ( 77) FVPIKVDREERPDVDAFYMSVCQAMTGTGGWPLTIIMTPDKEPFFAGTYI 1 M.tuberculosis ( 81) FVCIKVDREERPDIDAVYMNATVALTGQGGWPMTCFLTPNGRPFFCGTYY 1 H.sapiens ( 134) FVSVKVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPNLQPFVGGTYF 1 A.thaliana ( 232) FVSIKVDREERPDVDKVYMSFVQALYGGGGWPLSVFLSPDLKPLMGGTYF 1 C.elegans ( 89) FVAIKVDREERPDVDKLYMAFVVASSGHGGWPMSVFLTPDLHPITGGTYF 1 A.fulgidus ( 74) FVAIKVDRDERPDIDKRYQEFVMATTGSGGWPLTVFLTPDGKPFFGGTYF 1 D.melanogaster ( 148) FVNIKVDREERPDIDKIYMQFLLMSKGSGGWPMSVWLTPTLAPLVAGTYF 1 A.pernix ( 75) FVMVKVDREERPDVDTLLMRYCAIASGSCGWPLNVLLTPDGKPFYVATYL 1 //
log-odds matrix: alength= 20 w= 50 n= 7449 bayes= 10.9361 E= 1.4e-285 -413 -228 -494 -515 435 -491 -414 -228 -468 -224 -241 -402 -432 -440 -502 -356 -405 -299 -254 -113 -293 -240 -517 -524 -398 -491 -465 -48 -476 -312 -290 -436 -461 -451 -479 -425 -270 394 -528 -503 154 237 -257 -225 -303 -235 -230 -186 -159 -279 150 211 55 -130 -230 189 -107 -177 -360 -301 -346 -239 -476 -490 -297 -498 -484 410 -403 -115 -111 -357 -482 -395 -469 -380 -252 188 -450 -373 -402 -320 -498 -474 -548 -475 -398 -358 411 -500 -397 -306 -447 -345 -80 -421 -355 -458 -455 -494 -293 -240 -517 -524 -398 -491 -465 -48 -476 -312 -290 -436 -461 -451 -479 -425 -270 394 -528 -503 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -488 -338 -540 -570 -556 -486 -339 -466 -231 -522 -481 -375 -452 -309 401 -449 -439 -551 -442 -513 -508 -502 -181 358 -610 -521 -470 -473 -506 -624 -538 -358 -601 -315 -557 -502 -483 -529 -603 -596 -526 -501 -235 360 -611 -528 -478 -478 -538 -632 -548 -368 -619 -334 -570 -517 -496 -538 -603 -600 -488 -338 -540 -570 -556 -486 -339 -466 -231 -522 -481 -375 -452 -309 401 -449 -439 -551 -442 -513 -362 -395 -470 -485 -520 -456 -448 -454 -414 -499 -474 -410 434 -371 -458 -356 -368 -453 -559 -549 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -338 -224 -600 -591 -359 -580 -591 312 -538 -232 -222 -482 -543 -525 -585 -492 -277 333 -591 -499 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 178 -191 -267 -236 -396 -253 -238 -302 283 -367 -272 -143 -313 -127 -179 61 92 -271 -419 -354 -191 -120 -422 -388 50 -365 -300 215 -316 52 -73 -271 -346 -266 -6 -252 -136 289 -302 -261 -483 -332 -545 -560 -49 -530 -210 -295 -472 -19 -295 -365 -507 -381 -461 -423 -418 -360 -169 444 -474 -305 -541 -565 -401 -525 -486 -210 -462 -231 526 -433 -499 -176 -536 -444 -393 -311 -360 -357 62 -219 -125 30 -279 -216 -106 -200 -14 -255 -155 134 -210 143 167 121 83 -197 -312 -222 52 -115 -425 -384 318 -349 -255 123 -307 -127 -71 -254 -342 -252 -327 -228 -144 137 -235 103 -252 447 -507 -466 -242 -407 -381 19 -388 -1 -126 -332 -417 -336 -413 -295 176 251 -368 -314 -51 -148 -371 -234 -212 -353 -134 -55 -243 -35 127 -200 -317 405 -253 -222 -155 101 -285 -261 261 -131 -475 -439 -205 -318 -376 116 -374 3 245 -331 -430 -318 -394 -199 -206 -86 -342 -321 -1 -97 -369 -324 -168 -294 -251 -13 -246 118 307 -204 -309 -197 -279 123 177 -46 -263 -214 -259 -170 -331 -370 -363 -379 -309 -208 -6 -375 -213 -117 -353 -212 -290 178 368 -217 -396 20 -237 -281 -291 -378 -462 362 -352 -398 -312 -509 -380 -182 -391 -331 -339 -64 -317 -385 -413 -427 -1 -215 -139 -114 -304 88 128 -223 -48 -282 -183 -33 -234 266 -132 177 87 -218 -339 -249 -244 140 -304 -391 -471 362 -364 -408 -324 -517 -390 -196 -400 -343 -350 -239 -324 -393 -423 -437 -305 -339 -351 -439 -512 371 -406 -458 -372 -560 -441 -245 -441 -389 -396 -297 -381 -448 -462 -479 -450 -294 -445 -471 -164 -438 -391 -364 -401 -295 -304 -346 -455 -339 -391 -407 -379 -363 569 -196 -362 -395 -470 -485 -520 -456 -448 -454 -414 -499 -474 -410 434 -371 -458 -356 -368 -453 -559 -549 -473 -331 -727 -673 -176 -645 -531 -69 -597 239 403 -568 -560 -435 -568 -579 -398 -202 -382 -389 -256 -190 -249 -357 -400 -317 -297 -251 -275 -417 -257 246 -361 -232 -331 181 348 -253 -432 -407 -184 175 -424 -414 -311 -435 -366 176 -371 -225 -195 -341 -372 -351 -374 -339 -162 358 -454 -436 -408 -255 -565 -556 366 -531 -375 181 -490 9 -103 -422 -475 -399 -496 -407 -352 -210 278 -133 -392 -265 -554 -493 -171 -528 -414 97 -422 284 230 -414 -432 -314 -410 -419 -309 -160 -353 -347 -256 -170 -374 -430 -382 -388 -347 -215 -299 -396 -223 -140 -370 -247 -335 70 413 -219 -412 -421 -362 -395 -470 -485 -520 -456 -448 -454 -414 -499 -474 -410 434 -371 -458 -356 -368 -453 -559 -549 -351 -312 376 -83 -424 -360 -273 -350 -351 -450 -373 76 -439 -286 -390 -285 -134 -369 -428 -385 -10 -211 -203 -155 -289 189 -164 -166 95 136 -164 -89 -274 138 -105 -137 -122 -183 -333 -262 -12 -264 -179 143 -339 -267 131 -244 247 -295 -199 -75 -261 146 70 -129 -121 -243 -350 -270 -362 -395 -470 -485 -520 -456 -448 -454 -414 -499 -474 -410 434 -371 -458 -356 -368 -453 -559 -549 -386 -206 -493 -502 412 -495 -425 20 -456 -2 -141 -397 -422 -413 -490 -346 -368 -226 -245 -115 -205 -120 -334 -317 253 -329 -66 -71 -257 -160 124 -208 -303 -218 -275 -191 39 99 -138 307 240 249 -476 -473 -415 199 -437 -314 -428 -407 -311 -321 -376 -354 -431 -119 -186 42 -460 -463 -103 -278 -292 -379 -462 362 -353 -397 -312 -508 -379 -183 -391 -332 -338 -229 -315 -383 -413 -427 -399 -320 -515 -584 -520 -475 -485 -383 -465 -539 -402 -317 -489 -413 -490 -201 438 -386 -534 -541 -629 -449 -625 -694 -206 -567 -359 -500 -600 -514 -501 -484 -573 -506 -576 -554 -548 -544 -305 466 -365 -180 -455 -468 423 -464 -398 -71 -425 -123 -189 -364 -392 -403 -467 -309 -362 -248 -215 -12
letter-probability matrix: alength= 20 w= 50 n= 7449 E= 1.4e-285 0.005258 0.002657 0.001971 0.002253 0.903964 0.002384 0.001617 0.008082 0.002074 0.021639 0.004525 0.001935 0.002366 0.001507 0.001823 0.005204 0.002728 0.007489 0.003031 0.017490 0.012119 0.002439 0.001681 0.002115 0.002821 0.002374 0.001136 0.028176 0.001959 0.011700 0.003230 0.001532 0.001928 0.001395 0.002141 0.003245 0.006953 0.911430 0.000454 0.001171 0.266880 0.066781 0.010187 0.016743 0.005447 0.014046 0.005793 0.010768 0.017634 0.014783 0.068219 0.135602 0.068908 0.012860 0.012044 0.228171 0.021573 0.017356 0.001448 0.004755 0.008386 0.002457 0.002239 0.002667 0.005663 0.002258 0.000998 0.672589 0.003248 0.046110 0.011120 0.002639 0.001673 0.002056 0.002288 0.004418 0.007894 0.217635 0.000781 0.002878 0.005687 0.001405 0.001921 0.002977 0.000998 0.002660 0.001815 0.003270 0.920150 0.003196 0.001539 0.003766 0.002124 0.002915 0.033907 0.003337 0.003856 0.002481 0.000753 0.001245 0.012119 0.002439 0.001681 0.002115 0.002821 0.002374 0.001136 0.028176 0.001959 0.011700 0.003230 0.001532 0.001928 0.001395 0.002141 0.003245 0.006953 0.911430 0.000454 0.001171 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.003126 0.001238 0.001442 0.001536 0.000942 0.002463 0.002724 0.001553 0.010720 0.002732 0.000855 0.002341 0.002057 0.003743 0.954420 0.002737 0.002157 0.001299 0.000824 0.001090 0.002714 0.000398 0.017271 0.956856 0.000649 0.001934 0.001098 0.001481 0.001597 0.001354 0.000579 0.002620 0.000732 0.003575 0.001247 0.001895 0.001596 0.001520 0.000270 0.000616 0.002410 0.000400 0.011890 0.964409 0.000643 0.001843 0.001040 0.001432 0.001277 0.001274 0.000540 0.002458 0.000645 0.003146 0.001143 0.001708 0.001452 0.001420 0.000270 0.000599 0.003126 0.001238 0.001442 0.001536 0.000942 0.002463 0.002724 0.001553 0.010720 0.002732 0.000855 0.002341 0.002057 0.003743 0.954420 0.002737 0.002157 0.001299 0.000824 0.001090 0.007507 0.000833 0.002329 0.002772 0.001213 0.003031 0.001278 0.001681 0.003014 0.003215 0.000898 0.001827 0.952984 0.002427 0.002472 0.005202 0.003528 0.002572 0.000367 0.000849 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.008826 0.002732 0.000951 0.001328 0.003680 0.001284 0.000476 0.341999 0.001274 0.020461 0.005164 0.001115 0.001092 0.000834 0.001028 0.002029 0.006632 0.597599 0.000294 0.001203 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.316382 0.003446 0.009562 0.015501 0.002857 0.012373 0.005471 0.004823 0.377308 0.008003 0.003666 0.011617 0.005395 0.013194 0.017152 0.094090 0.085837 0.009075 0.000967 0.003281 0.024427 0.005627 0.003249 0.005428 0.063020 0.005694 0.003566 0.173728 0.005945 0.146744 0.014540 0.004787 0.004293 0.005019 0.056811 0.010736 0.017665 0.440264 0.002175 0.006282 0.003236 0.001293 0.001388 0.001646 0.031603 0.001819 0.006678 0.005072 0.002013 0.089157 0.003122 0.002501 0.001409 0.002261 0.002429 0.003281 0.002508 0.004880 0.005458 0.828248 0.003451 0.001553 0.001427 0.001586 0.002764 0.001876 0.000983 0.009160 0.002157 0.020589 0.923279 0.001561 0.001482 0.009356 0.001446 0.002831 0.002964 0.006854 0.001456 0.003225 0.141660 0.002825 0.025518 0.097954 0.006402 0.015966 0.013652 0.009788 0.048086 0.017398 0.008217 0.079245 0.010976 0.085687 0.187906 0.142681 0.080687 0.015111 0.002025 0.008216 0.131628 0.005817 0.003194 0.005558 0.402118 0.006347 0.004877 0.091825 0.006329 0.042165 0.014689 0.005398 0.004421 0.005521 0.006146 0.012703 0.016734 0.153178 0.003454 0.077897 0.016079 0.286806 0.001805 0.003148 0.008277 0.004248 0.002039 0.044591 0.003602 0.101532 0.010027 0.003139 0.002627 0.003095 0.003388 0.007956 0.153840 0.338095 0.001371 0.004334 0.064501 0.004634 0.004628 0.015755 0.010240 0.006201 0.011300 0.026723 0.009852 0.080102 0.058164 0.007847 0.005232 0.527881 0.010262 0.013210 0.015455 0.119321 0.002442 0.006251 0.562912 0.005220 0.002262 0.003798 0.010693 0.007895 0.002101 0.087554 0.003990 0.104307 0.131434 0.003169 0.002393 0.003495 0.003856 0.015480 0.010897 0.032764 0.001647 0.004133 0.091670 0.006592 0.004687 0.008448 0.013872 0.009311 0.005004 0.035818 0.009688 0.230399 0.202207 0.007640 0.005531 0.008107 0.008544 0.143989 0.154009 0.042990 0.002846 0.008647 0.015343 0.003981 0.006135 0.006128 0.003595 0.005179 0.003343 0.009305 0.051032 0.007602 0.005494 0.013942 0.004076 0.007290 0.007905 0.210753 0.580679 0.013227 0.001135 0.043856 0.017875 0.001841 0.008088 0.005800 0.001802 0.876307 0.002487 0.002479 0.006114 0.002993 0.001731 0.008899 0.003129 0.003194 0.005665 0.039460 0.005037 0.004114 0.001005 0.001983 0.091280 0.002916 0.023091 0.036310 0.005408 0.131263 0.069219 0.008352 0.038074 0.014440 0.006756 0.025046 0.009306 0.200426 0.023777 0.209897 0.082852 0.013114 0.001684 0.006788 0.016925 0.034115 0.007368 0.005304 0.001696 0.877490 0.002296 0.002322 0.005605 0.002828 0.001612 0.008095 0.002957 0.002953 0.005227 0.011736 0.004787 0.003894 0.000940 0.001850 0.011150 0.001229 0.005337 0.003796 0.001274 0.936810 0.001712 0.001643 0.004026 0.002105 0.001130 0.005748 0.002224 0.002138 0.003795 0.007883 0.003238 0.002662 0.000716 0.001385 0.004066 0.001685 0.002785 0.003040 0.014246 0.003433 0.001897 0.003142 0.003287 0.013223 0.002922 0.002854 0.002010 0.003025 0.003932 0.003667 0.003277 0.004807 0.912886 0.009816 0.007507 0.000833 0.002329 0.002772 0.001213 0.003031 0.001278 0.001681 0.003014 0.003215 0.000898 0.001827 0.952984 0.002427 0.002472 0.005202 0.003528 0.002572 0.000367 0.000849 0.003470 0.001301 0.000392 0.000753 0.013081 0.000818 0.000721 0.024292 0.000850 0.535104 0.392499 0.000611 0.000974 0.001558 0.001151 0.001110 0.002873 0.014611 0.001249 0.002585 0.015625 0.003452 0.010799 0.006705 0.002784 0.007938 0.003642 0.006884 0.007913 0.005654 0.004060 0.172680 0.003859 0.006374 0.005967 0.215495 0.506764 0.010249 0.000881 0.002275 0.025743 0.043488 0.003221 0.004519 0.005158 0.003503 0.002255 0.133106 0.004061 0.021403 0.006221 0.002961 0.003575 0.002790 0.004429 0.005865 0.014704 0.710382 0.000760 0.001857 0.005441 0.002204 0.001205 0.001695 0.560810 0.001799 0.002115 0.137271 0.001781 0.108751 0.011774 0.001689 0.001751 0.001995 0.001896 0.003654 0.003942 0.013822 0.121243 0.015163 0.006104 0.002054 0.001305 0.002612 0.013621 0.001843 0.001624 0.076720 0.002854 0.728561 0.118278 0.001784 0.002360 0.003594 0.003455 0.003376 0.005316 0.019572 0.001527 0.003440 0.015575 0.003977 0.004531 0.004054 motif=3 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 12, iter= 0 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 12, iter= 0 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 0.003136 0.004868 0.002583 0.008860 0.006702 0.006562 0.005136 0.011939 0.003632 0.005733 0.005817 0.100257 0.790524 0.013031 0.001011 0.002070 0.007507 0.000833 0.002329 0.002772 0.001213 0.003031 0.001278 0.001681 0.003014 0.003215 0.000898 0.001827 0.952984 0.002427 0.002472 0.005202 0.003528 0.002572 0.000367 0.000849 0.008108 0.001484 0.820205 0.045000 0.002356 0.005884 0.004317 0.003466 0.004674 0.004501 0.001819 0.053033 0.002257 0.004364 0.003979 0.008536 0.017858 0.004594 0.000906 0.002658 0.086210 0.003000 0.014877 0.027253 0.005989 0.265392 0.009147 0.012410 0.102760 0.262148 0.007706 0.016963 0.007053 0.082560 0.028663 0.023775 0.019393 0.016727 0.001755 0.006221 0.084887 0.002069 0.017549 0.215349 0.004252 0.011256 0.070587 0.007212 0.294257 0.013212 0.006069 0.018695 0.007701 0.087450 0.096241 0.025184 0.019589 0.010979 0.001560 0.005902 0.007507 0.000833 0.002329 0.002772 0.001213 0.003031 0.001278 0.001681 0.003014 0.003215 0.000898 0.001827 0.952984 0.002427 0.002472 0.005202 0.003528 0.002572 0.000367 0.000849 0.006349 0.003091 0.001990 0.002465 0.775102 0.002317 0.001503 0.045112 0.002255 0.100510 0.009062 0.002007 0.002526 0.001811 0.001985 0.005588 0.003529 0.012381 0.003226 0.017192 0.022272 0.005611 0.006000 0.008868 0.256795 0.007323 0.018093 0.023963 0.008976 0.033686 0.056871 0.007450 0.005771 0.007005 0.008782 0.016334 0.059432 0.117861 0.006768 0.322137 0.485390 0.072661 0.002243 0.003013 0.002505 0.283047 0.001385 0.004456 0.002733 0.006085 0.002790 0.003397 0.003483 0.002732 0.002979 0.026990 0.012518 0.079328 0.000727 0.001539 0.044947 0.001875 0.008016 0.005781 0.001808 0.876042 0.002475 0.002497 0.006103 0.003013 0.001743 0.008815 0.003147 0.003190 0.005671 0.012619 0.005100 0.004170 0.001008 0.001982 0.005803 0.001403 0.001708 0.001397 0.001205 0.002652 0.000988 0.002759 0.002118 0.002440 0.001489 0.003498 0.001586 0.001817 0.001986 0.015315 0.946413 0.004089 0.000436 0.000899 0.001177 0.000575 0.000799 0.000651 0.010620 0.001403 0.002368 0.001223 0.000830 0.002889 0.000747 0.001100 0.000889 0.000951 0.001092 0.001319 0.001017 0.001369 0.002122 0.966858 0.007317 0.003720 0.002585 0.003110 0.831008 0.002871 0.001812 0.024054 0.002795 0.043627 0.006502 0.002522 0.003113 0.001938 0.002330 0.007234 0.003689 0.010656 0.003971 0.035145
Time 51.89 secs.
BL MOTIF 3 width=50 seqs=11 H.sapiens ( 296) MALHTLKMMANGGIRDHVGQGFHRYSTDRQWHVPHFEKMLYDQAQLAVAY 1 A.thaliana ( 391) MVLFSLQGMANGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVY 1 B.subtilis ( 233) NVTKTLDSMANGGIYDHIGYGFARYSTDDEWLVPHFEKMLYDNALLLTAY 1 A.aeolicus ( 231) MIEKTLTNMRMGGIYDHVGFGFHRYSTDREWILPHFEKMLYDQAMLLFAY 1 C.elegans ( 247) MLQKTLESMADGGIHDHIGNGFHRYSVGSEWHIPHFEKMLYDQSQLLATY 1 D.radiodaurans ( 237) MALHTLRMMGAGGIYDQLGGGFHRYSVDAQWLVPHFEKMLYDNAQLVRTL 1 M.tuberculosis ( 231) AVARTGNAMARGGIYDQLGGGFARYSVDGAWVVPHFEKMLYDNALLLRAY 1 M.thermoautotrophicum ( 229) MVRLTLERMRYGGIYDQLGYGFHRYAVEPTWTIPHFEKMLYDQALAMTAY 1 A.fulgidus ( 228) AAEITLDAMARGGIYDHLLGGFFRYSTDAKWVTPHYEKMLYDNAELLYLY 1 D.melanogaster ( 308) MVIETLTQIGKGGIHDHIFGGFARYATTQDWHNVHFEKMLYDQGQLMMAF 1 A.pernix ( 224) MLTGTLDHMLFSGVHDLVEGGLHRYSVTRDWRLPHYEKMLYDQAWIIQVL 1 //
log-odds matrix: alength= 20 w= 50 n= 7449 bayes= 10.4288 E= 2.0e-246 46 -199 -411 -435 -378 -314 -399 -225 -356 -291 490 87 -399 -328 -405 -215 -236 -254 -409 -379 119 -175 -510 -482 -273 -461 -415 154 -417 63 -153 -369 -437 -376 -438 -355 -207 294 -419 -368 -5 -178 -153 87 -238 -232 -126 86 -40 88 -119 -50 -226 137 43 -91 158 -138 -293 -214 -138 -208 -137 26 44 -6 207 72 196 -50 -145 -34 -216 0 49 -79 -73 -180 -306 -211 -256 -170 -374 -430 -382 -388 -347 -215 -299 -396 -223 -140 -370 -247 -335 70 413 -219 -412 -421 -376 -273 -524 -483 -225 -41 -409 -103 -410 305 -72 -393 -421 -318 -402 -383 -313 -198 -384 -368 -146 -234 165 99 -295 -225 -119 -214 90 -269 -169 135 -221 143 47 -85 157 -211 -327 -236 62 -216 -125 -82 -276 -6 121 -196 -14 -252 223 133 -209 143 48 121 -68 -193 -310 -219 -475 -304 -546 -574 -390 -530 -491 -114 -476 -222 526 -438 -501 -443 -550 -449 -392 -295 -359 -358 268 -70 -359 -331 -328 59 -319 -222 -228 -84 -217 -236 -370 -230 74 -84 -160 -145 -375 -364 -5 -213 35 -83 42 -217 -104 -190 91 -248 133 254 -209 5 118 -72 -69 -190 -305 72 -237 -281 -291 -378 -462 362 -352 -398 -312 -509 -380 -182 -391 -331 -339 -64 -317 -385 -413 -427 -305 -339 -351 -439 -512 371 -406 -458 -372 -560 -441 -245 -441 -389 -396 -297 -381 -448 -462 -479 -332 -241 -426 -443 -263 -457 -429 416 -351 -70 52 -308 -442 -342 -416 -332 -230 119 -396 -326 -426 -300 -460 -467 -23 -478 344 -320 -312 -347 -309 -283 -458 -285 40 -357 -363 -358 -150 373 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -358 -219 -264 -323 -224 -368 459 -324 -290 -146 -225 -25 -335 177 -171 -215 -224 -321 -260 -66 -367 -242 -589 -580 -284 -563 -547 327 -506 161 -144 -452 -536 -464 -553 -463 -288 215 -480 -425 -239 -281 -284 -135 -71 352 -340 -362 -300 -182 -353 -175 -388 -317 -329 -230 -312 -363 -399 -395 -283 -292 -250 -321 55 304 -236 -324 -258 -394 -319 105 -385 87 -314 -228 -271 -340 -262 168 -305 -339 -351 -439 -512 371 -406 -458 -372 -560 -441 -245 -441 -389 -396 -297 -381 -448 -462 -479 -369 -183 -459 -472 427 -467 -400 -174 -428 -115 -187 -367 -395 -405 -470 -313 -364 -248 -218 -79 103 -235 -353 -407 74 -366 441 -309 -367 -340 -274 -134 -391 -125 -283 -244 -260 -317 -235 -60 -488 -338 -540 -570 -556 -486 -339 -466 -231 -522 -481 -375 -452 -309 401 -449 -439 -551 -442 -513 -629 -449 -625 -694 -206 -567 -359 -500 -600 -514 -501 -484 -573 -506 -576 -554 -548 -544 -305 466 92 -150 -460 -508 -464 -262 -443 -403 -431 -487 -378 -260 -360 -365 -434 359 -73 -327 -500 -481 -280 -215 -564 -568 -371 -429 -528 -19 -493 -269 -245 -399 -485 -451 -527 -295 314 308 -535 -467 -340 -320 368 -50 -433 -131 -264 -359 -314 -455 -377 -20 -418 -250 -376 -261 12 -374 -440 -387 62 -220 37 32 -279 -6 -107 -200 -16 -255 -155 -24 43 143 166 54 -70 -197 -312 -222 -6 212 113 140 -286 -222 -113 -206 90 -261 -161 -30 -214 213 -106 -79 82 -202 -319 -228 -450 -294 -445 -471 -164 -438 -391 -364 -401 -295 -304 -346 -455 -339 -391 -407 -379 -363 569 -196 -170 -86 -372 -323 -144 -304 313 138 -236 72 -37 -198 -304 -186 23 -183 88 152 -240 -188 -180 -116 -410 -382 -213 -368 -304 210 -315 31 -99 67 -342 -273 -329 -257 49 302 -323 -281 -204 -269 -334 -332 -386 -340 -316 -290 -262 -350 -319 -270 413 -221 -316 -202 -216 -20 -466 -431 -590 -435 -506 -588 -464 -526 508 -578 -561 -567 -502 -304 -525 -290 -447 -473 -477 -577 -486 -333 -421 -232 -499 -515 417 -498 -288 -233 -455 -231 -243 -365 -439 -397 -472 -356 -395 -300 -181 160 -526 -501 -235 360 -611 -528 -478 -478 -538 -632 -548 -368 -619 -334 -570 -517 -496 -538 -603 -600 -402 -320 -498 -474 -548 -475 -398 -358 411 -500 -397 -306 -447 -345 -80 -421 -355 -458 -455 -494 -485 -314 -550 -581 -411 -531 -496 -219 -483 -241 528 -444 -505 -452 -556 -455 -404 -320 -368 -367 -458 -330 -584 -554 -253 -540 -465 -136 -481 318 -111 -465 -478 -381 -468 -473 -379 -241 -419 -408 -629 -449 -625 -694 -206 -567 -359 -500 -600 -514 -501 -484 -573 -506 -576 -554 -548 -544 -305 466 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -365 -367 -189 -282 -488 -298 -250 -478 -221 -515 -437 338 -405 416 -297 -227 -278 -476 -506 -405 294 -70 -419 -410 -367 71 -393 -275 -365 -357 -260 -290 -387 -319 -383 44 -173 -166 -410 -420 -244 -208 -315 -55 -293 -365 -73 -166 -187 13 70 -162 -301 425 -204 -220 -190 -204 80 -310 -110 -233 -503 -443 -172 -481 -373 73 -371 294 -17 -364 -390 -275 -363 -366 -270 -131 -341 -327 52 -169 -490 -437 -173 -414 -342 128 -359 219 249 -318 -388 -285 -368 -299 -195 69 -313 -279 -6 -154 -173 -128 57 -240 -132 -87 -60 -183 146 124 -234 131 115 -100 158 47 -274 86 260 -70 -409 -380 -260 -232 -339 -78 -320 -55 -149 -273 -383 -281 -346 -112 129 115 -343 -318 -392 -271 -464 -466 138 -474 -142 -260 -398 59 -254 -311 -440 -328 -398 -342 -351 -315 -138 410
letter-probability matrix: alength= 20 w= 50 n= 7449 E= 2.0e-246 0.126578 0.003245 0.003523 0.003927 0.003232 0.008132 0.001796 0.008227 0.004518 0.013534 0.719407 0.057354 0.002967 0.003277 0.003579 0.013882 0.008822 0.010194 0.001036 0.002771 0.210305 0.003845 0.001772 0.002822 0.006696 0.002924 0.001605 0.113970 0.002941 0.158250 0.008332 0.002429 0.002277 0.002343 0.002838 0.005239 0.010759 0.456713 0.000963 0.002977 0.088788 0.003753 0.020946 0.146297 0.008559 0.014297 0.011896 0.070979 0.040347 0.187818 0.010541 0.022190 0.009874 0.082015 0.079839 0.032802 0.135279 0.022825 0.002312 0.008645 0.035493 0.003051 0.023552 0.095589 0.060273 0.068463 0.119791 0.064793 0.206869 0.072334 0.008784 0.024883 0.010569 0.031677 0.083033 0.035501 0.027353 0.017026 0.002110 0.008857 0.015575 0.003977 0.004531 0.004054 0.003136 0.004868 0.002583 0.008860 0.006702 0.006562 0.005136 0.011939 0.003632 0.005733 0.005817 0.100257 0.790524 0.013031 0.001011 0.002070 0.006805 0.001941 0.001610 0.002798 0.009334 0.053967 0.001678 0.019267 0.003096 0.844352 0.014631 0.002054 0.002544 0.003506 0.003637 0.004336 0.005173 0.015055 0.001227 0.002989 0.033465 0.002545 0.191060 0.158958 0.005747 0.015012 0.012550 0.008868 0.099088 0.015791 0.007438 0.079833 0.010193 0.085634 0.082009 0.034202 0.134561 0.013779 0.001825 0.007442 0.142004 0.002893 0.025433 0.045296 0.006561 0.068350 0.066170 0.010110 0.048196 0.017820 0.112980 0.078853 0.011083 0.085567 0.082321 0.142170 0.028233 0.015544 0.002061 0.008354 0.003414 0.001573 0.001377 0.001498 0.002968 0.001809 0.000953 0.017809 0.001960 0.021931 0.920920 0.001511 0.001464 0.001473 0.001307 0.002739 0.002984 0.007656 0.001461 0.003195 0.591137 0.007959 0.005025 0.008030 0.004560 0.107793 0.003126 0.008439 0.010949 0.057154 0.005343 0.006121 0.003635 0.006450 0.098880 0.034274 0.014970 0.021778 0.001306 0.003069 0.088848 0.002950 0.077262 0.044898 0.059523 0.015928 0.013850 0.010495 0.099924 0.018243 0.060663 0.182934 0.011046 0.032992 0.134087 0.037250 0.028151 0.015939 0.002132 0.062887 0.017875 0.001841 0.008088 0.005800 0.001802 0.876307 0.002487 0.002479 0.006114 0.002993 0.001731 0.008899 0.003129 0.003194 0.005665 0.039460 0.005037 0.004114 0.001005 0.001983 0.011150 0.001229 0.005337 0.003796 0.001274 0.936810 0.001712 0.001643 0.004026 0.002105 0.001130 0.005748 0.002224 0.002138 0.003795 0.007883 0.003238 0.002662 0.000716 0.001385 0.009236 0.002425 0.003179 0.003710 0.007173 0.003014 0.001456 0.700149 0.004657 0.062766 0.034609 0.003705 0.002207 0.002967 0.003311 0.006162 0.009210 0.134935 0.001136 0.003995 0.004805 0.001613 0.002508 0.003136 0.037896 0.002610 0.309142 0.004282 0.006120 0.009208 0.002821 0.004406 0.001965 0.004393 0.078000 0.005201 0.003661 0.004955 0.006245 0.507033 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.007715 0.002825 0.009737 0.008505 0.009382 0.005589 0.688412 0.004150 0.007098 0.037197 0.005057 0.026492 0.004617 0.108057 0.018114 0.013859 0.009595 0.006424 0.002913 0.024262 0.007228 0.002419 0.001026 0.001436 0.006204 0.001439 0.000645 0.378249 0.001593 0.310555 0.008874 0.001365 0.001150 0.001271 0.001277 0.002480 0.006162 0.263990 0.000634 0.002004 0.017613 0.001840 0.008499 0.031255 0.027163 0.821955 0.002701 0.003190 0.006660 0.028861 0.002078 0.009313 0.003211 0.003519 0.006057 0.012479 0.005222 0.004796 0.001110 0.002478 0.012933 0.001709 0.010693 0.008599 0.064966 0.589533 0.005542 0.004161 0.008899 0.006643 0.002637 0.064894 0.003268 0.057963 0.006705 0.012676 0.006941 0.005620 0.002859 0.122760 0.011150 0.001229 0.005337 0.003796 0.001274 0.936810 0.001712 0.001643 0.004026 0.002105 0.001130 0.005748 0.002224 0.002138 0.003795 0.007883 0.003238 0.002662 0.000716 0.001385 0.007156 0.003634 0.002520 0.003030 0.854939 0.002809 0.001789 0.011703 0.002727 0.046028 0.006608 0.002463 0.003043 0.001912 0.002284 0.007040 0.003622 0.010607 0.003899 0.022185 0.188701 0.002536 0.005237 0.004758 0.074416 0.005672 0.605292 0.004606 0.004171 0.009659 0.003600 0.012442 0.003127 0.013334 0.008339 0.011333 0.007453 0.006584 0.003453 0.025287 0.003126 0.001238 0.001442 0.001536 0.000942 0.002463 0.002724 0.001553 0.010720 0.002732 0.000855 0.002341 0.002057 0.003743 0.954420 0.002737 0.002157 0.001299 0.000824 0.001090 0.001177 0.000575 0.000799 0.000651 0.010620 0.001403 0.002368 0.001223 0.000830 0.002889 0.000747 0.001100 0.000889 0.000951 0.001092 0.001319 0.001017 0.001369 0.002122 0.966858 0.173881 0.004559 0.002500 0.002351 0.001788 0.011636 0.001323 0.002404 0.002675 0.003500 0.001755 0.005188 0.003884 0.002535 0.002920 0.741670 0.027372 0.006141 0.000552 0.001367 0.013197 0.002911 0.001213 0.001553 0.003395 0.003667 0.000733 0.034285 0.001737 0.015806 0.004409 0.001980 0.001630 0.001394 0.001529 0.007964 0.399389 0.501275 0.000432 0.001500 0.008736 0.001407 0.775405 0.056323 0.002216 0.028760 0.004567 0.003248 0.006031 0.004360 0.001767 0.027257 0.002599 0.005630 0.004368 0.010100 0.049338 0.004431 0.000835 0.002621 0.141603 0.002813 0.078461 0.099292 0.006404 0.068517 0.013640 0.009776 0.047671 0.017392 0.008220 0.026541 0.063719 0.085704 0.187202 0.089760 0.027921 0.015124 0.002021 0.008216 0.088606 0.056017 0.133166 0.210326 0.006111 0.015391 0.013073 0.009422 0.099354 0.016734 0.007898 0.025483 0.010680 0.139143 0.028374 0.035685 0.080147 0.014612 0.001929 0.007848 0.004066 0.001685 0.002785 0.003040 0.014246 0.003433 0.001897 0.003142 0.003287 0.013223 0.002922 0.002854 0.002010 0.003025 0.003932 0.003667 0.003277 0.004807 0.912886 0.009816 0.028438 0.007126 0.004594 0.008516 0.016338 0.008696 0.250274 0.102419 0.010353 0.168537 0.018646 0.007953 0.005736 0.008748 0.069234 0.017272 0.083120 0.170299 0.003333 0.010371 0.026515 0.005794 0.003530 0.005657 0.010129 0.005578 0.003475 0.167969 0.005975 0.126489 0.012115 0.050029 0.004397 0.004776 0.006037 0.010392 0.063548 0.480277 0.001875 0.005442 0.022431 0.001999 0.005976 0.007965 0.003055 0.006763 0.003195 0.005237 0.008624 0.009049 0.002647 0.004843 0.825375 0.006871 0.006607 0.015137 0.010114 0.051485 0.000699 0.001927 0.001543 0.000634 0.001822 0.001359 0.001788 0.001871 0.964981 0.000713 0.001090 0.002008 0.000740 0.003807 0.001236 0.004256 0.002681 0.002326 0.001656 0.001089 0.000607 0.003792 0.004960 0.002583 0.001915 0.002253 0.801769 0.002259 0.003865 0.007786 0.002262 0.020573 0.004469 0.002499 0.002251 0.002032 0.002243 0.005216 0.002925 0.007391 0.005041 0.115709 0.002410 0.000400 0.011890 0.964409 0.000643 0.001843 0.001040 0.001432 0.001277 0.001274 0.000540 0.002458 0.000645 0.003146 0.001143 0.001708 0.001452 0.001420 0.000270 0.000599 0.005687 0.001405 0.001921 0.002977 0.000998 0.002660 0.001815 0.003270 0.920150 0.003196 0.001539 0.003766 0.002124 0.002915 0.033907 0.003337 0.003856 0.002481 0.000753 0.001245 0.003186 0.001465 0.001339 0.001422 0.002571 0.001805 0.000918 0.008590 0.001862 0.019247 0.935892 0.001443 0.001421 0.001389 0.001257 0.002623 0.002760 0.006436 0.001371 0.003003 0.003856 0.001311 0.001061 0.001716 0.007685 0.001692 0.001140 0.015312 0.001898 0.925676 0.011130 0.001250 0.001719 0.002266 0.002306 0.002313 0.003280 0.011166 0.000963 0.002260 0.001177 0.000575 0.000799 0.000651 0.010620 0.001403 0.002368 0.001223 0.000830 0.002889 0.000747 0.001100 0.000889 0.000951 0.001092 0.001319 0.001017 0.001369 0.002122 0.966858 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.007325 0.001014 0.016375 0.011279 0.001511 0.009054 0.005046 0.001430 0.011498 0.002876 0.001168 0.326788 0.002842 0.569810 0.007545 0.012808 0.006608 0.002183 0.000527 0.002314 0.704554 0.007947 0.003326 0.004648 0.003487 0.117281 0.001870 0.005850 0.004239 0.008607 0.003967 0.004205 0.003235 0.003488 0.004167 0.083625 0 motif=4 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 8, iter= 20 em: w= 8, psites= 8, iter= 30 em: w= 8, psites= 8, iter= 40 em: w= 8, psites= 12, iter= 0 em: w= 8, psites= 12, iter= 10 em: w= 8, psites= 12, iter= 20 em: w= 8, psites= 12, iter= 30 em: w= 8, psites= 12, iter= 40 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 2, iter= 10 em: w= 11, psites= 2, iter= 20 em: w= 11, psites= 2, iter= 30 em: w= 11, psites= 2, iter= 40 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 8, iter= 10 em: w= 11, psites= 8, iter= 20 em: w= 11, psites= 8, iter= 30 em: w= 11, psites= 8, iter= 40 em: w= 11, psites= 12, iter= 0 em: w= 11, psites= 12, iter= 10 em: w= 11, psites= 12, iter= 20 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 2, iter= 10 em: w= 15, psites= 2, iter= 20 em: w= 15, psites= 2, iter= 30 em: w= 15, psites= 2, iter= 40 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 15, psites= 12, iter= 10 em: w= 15, psites= 12, iter= 20 em: w= 15, psites= 12, iter= 30 em: w= 15, psites= 12, iter= 40 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 2, iter= 10 em: w= 29, psites= 2, iter= 20 em: w= 29, psites= 2, iter= 30 em: w= 29, psites= 2, iter= 40 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 .013685 0.018716 0.001025 0.002077 0.016981 0.003043 0.006830 0.054387 0.005840 0.005684 0.017169 0.012445 0.014577 0.111826 0.039035 0.010238 0.005859 0.606584 0.014422 0.013354 0.012104 0.014399 0.030772 0.004450 0.043028 0.002571 0.001860 0.003710 0.013498 0.002551 0.002157 0.065027 0.004057 0.783467 0.021416 0.002516 0.003167 0.004734 0.004787 0.004885 0.006970 0.023962 0.001663 0.003976 0.131607 0.004000 0.002031 0.003855 0.013402 0.004059 0.002661 0.095402 0.004418 0.465187 0.134915 0.003462 0.003208 0.004414 0.004607 0.007750 0.011762 0.095710 0.002010 0.005538 0.088478 0.004424 0.018273 0.032778 0.065952 0.013567 0.011417 0.021387 0.034975 0.028604 0.066206 0.074245 0.009339 0.078948 0.131190 0.030829 0.135645 0.081928 0.002644 0.069170 0.557622 0.007927 0.003570 0.005729 0.007318 0.014356 0.002714 0.022857 0.005789 0.069692 0.008555 0.004722 0.003306 0.004545 0.005383 0.028236 0.110396 0.131431 0.001640 0.004213 0.006075 0.001969 0.002433 0.003148 0.115577 0.002682 0.010637 0.006466 0.003367 0.153086 0.004151 0.003641 0.002237 0.003262 0.003757 0.005740 0.003975 0.006679 0.006765 0.654354
Time 75.07 secs.
BL MOTIF 4 width=41 seqs=11 D.radiodaurans ( 409) RAKLFAARQVRPQPHTDDKVLTSWNGLVLAALADAARILGE 1 B.subtilis ( 398) RQQLLKTREERTYPHVDDKVLTSWNALMIAGLAKAAKVYQE 1 A.thaliana ( 573) RRKLFDVRLKRPKPHLDDKIIVSWNGLVISSFARASKILKA 1 A.aeolicus ( 403) RKKLFEAREKRVKPLRDEKILTDWNGLTIAALSYAGKVFGE 1 M.thermoautotrophicum ( 395) RRVLLERRLEREAPSVDDKVLTDWNGLMIGALARCSRVLDH 1 A.pernix ( 393) RRILLRIRSRREKPGVDDKVLTDWNGMMLHALAHLYWVSRD 1 H.sapiens ( 485) LEKLFQARKHRPKPHLDSKMLAAWNGLMVSGYAVTGAVLGQ 1 D.melanogaster ( 500) NDILHVIRDKRPRPHLDTKIICAWNGLVLSGLCKLGNCYSA 1 C.elegans ( 435) KEILWNARTQRPSPHLDSKMVTSWQGLAITGLVKAYQATEE 1 M.tuberculosis ( 386) RAALLVARLARAQPARDDKVVTSWNGLAITALAEASVALDD 1 A.fulgidus ( 388) RRKMLEFREQREMPYIDTTIYAGWNGLMIEALCMHHKVFGD 1 //
log-odds matrix: alength= 20 w= 41 n= 7557 bayes= 9.32063 E= 3.8e-107 -358 -262 -423 -360 -478 -397 -211 -339 56 -126 -326 44 -366 -126 368 -308 -286 -395 -358 -397 65 -266 47 114 -328 -254 -145 -239 91 -293 -195 -64 -243 144 212 -115 -111 -234 -355 -266 -11 -175 -263 -202 -244 -297 -186 240 272 -200 -124 -132 -296 134 -112 -168 -126 58 -308 -248 -376 -252 -526 -465 -169 -506 -391 -49 -394 302 137 -388 -408 -291 -383 -393 -293 -155 -345 -336 -489 -323 -582 -587 294 -545 153 -238 -488 201 -234 -369 -518 -376 -468 -439 -397 -317 223 7 -5 -224 38 138 -284 -220 -110 -204 91 -258 -158 132 -212 143 47 -77 -73 103 -316 -226 213 -68 -378 -333 57 -263 -257 184 -258 -129 -57 -216 -321 -210 2 -142 70 75 -257 -214 -488 -338 -540 -570 -556 -486 -339 -466 -231 -522 -481 -375 -452 -309 401 -449 -439 -551 -442 -513 -144 -236 42 145 -295 -228 -120 -212 89 81 -168 -38 -220 143 -114 52 82 -208 -327 -237 -7 -231 -142 92 -295 -231 124 -212 202 -265 -166 -40 -224 215 56 -88 -84 21 -322 -234 -488 -338 -540 -570 -556 -486 -339 -466 -231 -522 -481 -375 -452 -309 401 -449 -439 -551 -442 -513 -40 -251 -255 95 -364 -314 -276 -264 -206 -328 -277 -213 356 -161 -275 -179 33 -13 -436 -386 -7 -231 -148 -101 -295 -233 -118 -209 236 -264 138 -42 -227 216 58 52 -86 -208 -322 71 -362 -395 -470 -485 -520 -456 -448 -454 -414 -499 -474 -410 434 -371 -458 -356 -368 -453 -559 -549 -142 -207 -253 -304 -221 -121 452 -288 -292 -145 -210 -21 -323 -1 -173 -62 -205 -288 -258 36 -196 -105 -424 -372 -160 -337 -275 143 -286 163 -48 -243 -334 -233 114 -219 84 200 -266 -219 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -299 -339 322 22 -454 -272 -231 -385 -218 -458 -375 -13 -357 -161 -320 97 133 -382 -478 -382 -382 -305 -480 -450 -535 -461 -376 -341 408 -481 -377 -285 -434 -315 -62 -399 -165 -438 -441 -478 -354 -229 -597 -585 -320 -565 -565 322 -517 -191 263 -460 -541 -489 -569 -468 -280 283 -522 -449 -320 -209 -532 -480 -188 -470 -391 199 -405 242 -57 -370 -426 -322 -410 -359 -243 137 -348 74 68 234 -432 -466 -383 -309 -387 -210 -358 -372 -248 -207 -368 -293 -382 -69 374 34 -435 -427 94 -209 200 -293 -476 33 -281 -427 -283 -495 -402 -68 -351 -237 -365 271 -188 -356 -514 -428 -450 -294 -445 -471 -164 -438 -391 -364 -401 -295 -304 -346 -455 -339 -391 -407 -379 -363 569 -196 -391 -258 -224 -432 -375 -350 -109 -261 -289 -420 -320 478 -370 -98 -351 -151 -211 -348 -354 -358 -103 -278 -292 -379 -462 362 -353 -397 -312 -508 -379 -183 -391 -332 -338 -229 -315 -383 -413 -427 -376 -252 -526 -465 -169 -506 -391 -49 -394 302 137 -388 -408 -291 -383 -393 -293 -155 -345 -336 82 -127 -457 -414 -216 -329 -326 -11 -336 -165 389 -279 -361 -280 -358 -217 91 208 -322 -274 -345 -245 -461 -474 -264 -484 -457 402 -385 65 -84 -341 -466 -370 -447 -363 -248 114 -413 -349 125 -194 -144 16 -302 -4 119 -221 -56 -282 -183 -37 -239 -34 -139 182 161 -210 -338 -253 252 -137 -489 -514 -476 215 -467 -401 -478 -482 -378 -321 -372 -378 -470 69 -196 -286 -512 -516 -393 -264 -529 -478 57 -508 -321 -79 -403 292 -49 -374 -421 -300 -391 -395 -308 -181 -267 68 291 248 -384 -364 -318 -178 -355 -220 -316 -304 -209 -271 -398 -286 -341 23 -158 -5 -364 -375 -135 -218 35 29 -277 -218 122 -198 196 -253 134 -27 -211 6 120 -74 -70 19 -311 68 275 172 -366 -339 -263 -189 32 -139 -281 -27 -155 -244 -374 -250 -312 -68 13 -89 -327 -314 87 -192 -200 -224 -299 166 140 -265 -164 -343 -253 -80 -302 -137 -242 191 -149 -252 -380 194 -11 -248 -176 -124 -319 -255 -132 -227 246 -281 -184 132 -249 145 136 -115 -107 24 176 -255 -2 147 -397 -386 -289 -403 -332 158 -341 -217 -178 -311 -344 -318 -342 -304 -139 346 -416 -402 -232 -141 -414 -377 174 -360 -195 -48 -300 192 -79 -248 -347 -241 -317 21 71 -90 -196 213 -151 -237 117 35 -299 175 -121 -220 89 -274 -175 -27 -225 142 47 53 -87 -216 -331 -240 68 -450 194 221 -497 -338 129 -355 -150 -412 -319 -161 -312 144 -282 -228 -225 -330 -524 -420
letter-probability matrix: alength= 20 w= 41 n= 7557 E= 3.8e-107 0.007688 0.002096 0.003236 0.006562 0.001612 0.004576 0.006634 0.003739 0.078479 0.042519 0.002507 0.042533 0.003738 0.013266 0.759554 0.007278 0.006234 0.003840 0.001474 0.002436 0.144021 0.002039 0.084050 0.175313 0.004564 0.012328 0.010453 0.007474 0.099889 0.013376 0.006245 0.020089 0.008732 0.086367 0.257036 0.027701 0.021037 0.011747 0.001503 0.006038 0.085592 0.003839 0.009796 0.019610 0.008208 0.009123 0.007868 0.207641 0.350434 0.025564 0.010212 0.012589 0.006066 0.080488 0.027239 0.019249 0.018935 0.088616 0.002079 0.006854 0.006786 0.002243 0.001583 0.003173 0.013775 0.002148 0.001901 0.027970 0.003469 0.825922 0.062138 0.002129 0.002781 0.004220 0.004169 0.004037 0.005944 0.020271 0.001613 0.003728 0.003109 0.001372 0.001075 0.001361 0.340297 0.001635 0.082586 0.007526 0.001801 0.411077 0.004752 0.002425 0.001302 0.002353 0.002308 0.002939 0.002894 0.006608 0.082484 0.040098 0.088758 0.002726 0.079146 0.208401 0.006222 0.015527 0.013283 0.009570 0.099918 0.017022 0.008041 0.078584 0.010824 0.085816 0.082005 0.036189 0.027234 0.120776 0.001967 0.007990 0.402104 0.008081 0.004432 0.007938 0.066037 0.011582 0.004820 0.140440 0.008888 0.041626 0.016172 0.007016 0.005080 0.007389 0.060148 0.023052 0.073821 0.099712 0.002964 0.008699 0.003126 0.001238 0.001442 0.001536 0.000942 0.002463 0.002724 0.001553 0.010720 0.002732 0.000855 0.002341 0.002057 0.003743 0.954420 0.002737 0.002157 0.001299 0.000824 0.001090 0.033892 0.002523 0.081348 0.217626 0.005767 0.014679 0.012387 0.009013 0.098279 0.178718 0.007523 0.024138 0.010278 0.085816 0.026915 0.088097 0.079743 0.014027 0.001821 0.007412 0.087657 0.002597 0.022622 0.151505 0.005752 0.014405 0.067616 0.009045 0.215465 0.016213 0.007601 0.023849 0.009962 0.141409 0.087437 0.033357 0.025336 0.068753 0.001894 0.007526 0.003126 0.001238 0.001442 0.001536 0.000942 0.002463 0.002724 0.001553 0.010720 0.002732 0.000855 0.002341 0.002057 0.003743 0.954420 0.002737 0.002157 0.001299 0.000824 0.001090 0.069832 0.002260 0.010335 0.154188 0.003555 0.008083 0.004217 0.006279 0.012766 0.010535 0.003542 0.007160 0.555564 0.010373 0.008780 0.017827 0.057056 0.054156 0.000858 0.002635 0.087461 0.002612 0.021746 0.039751 0.005761 0.014179 0.012635 0.009198 0.272701 0.016316 0.062822 0.023456 0.009780 0.141540 0.088424 0.087987 0.025013 0.014001 0.001896 0.062721 0.007507 0.000833 0.002329 0.002772 0.001213 0.003031 0.001278 0.001681 0.003014 0.003215 0.000898 0.001827 0.952984 0.002427 0.002472 0.005202 0.003528 0.002572 0.000367 0.000849 0.034371 0.003075 0.010477 0.009679 0.009571 0.030972 0.653745 0.005335 0.007026 0.037417 0.005604 0.027132 0.005023 0.031613 0.017849 0.040083 0.010903 0.008034 0.002940 0.049150 0.023651 0.006216 0.003214 0.006037 0.014655 0.006904 0.004250 0.105798 0.007306 0.315183 0.017265 0.005808 0.004648 0.006311 0.130024 0.013452 0.080934 0.237156 0.002787 0.008400 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.011586 0.001227 0.563897 0.092689 0.001913 0.010831 0.005768 0.002729 0.011722 0.004277 0.001787 0.028771 0.003979 0.010416 0.006458 0.120595 0.113811 0.004192 0.000642 0.002710 0.006509 0.001555 0.002177 0.003515 0.001088 0.002931 0.002107 0.003689 0.898820 0.003629 0.001761 0.004356 0.002334 0.003579 0.038526 0.003885 0.014475 0.002844 0.000828 0.001393 0.007897 0.002630 0.000968 0.001382 0.004825 0.001422 0.000570 0.365039 0.001471 0.027131 0.149168 0.001295 0.001109 0.001075 0.001148 0.002405 0.006524 0.421761 0.000473 0.001706 0.010027 0.003032 0.001515 0.002856 0.012075 0.002747 0.001899 0.155777 0.003212 0.546737 0.016261 0.002413 0.002454 0.003418 0.003453 0.005121 0.008404 0.153229 0.001580 0.063791 0.147984 0.065556 0.003036 0.003154 0.003119 0.008384 0.001956 0.009165 0.004445 0.007727 0.004323 0.007453 0.003684 0.004156 0.004185 0.038108 0.605522 0.075202 0.000867 0.001975 0.176283 0.003027 0.242147 0.010487 0.001641 0.089645 0.004069 0.002038 0.007493 0.003297 0.001485 0.019570 0.004127 0.006136 0.004702 0.404025 0.012341 0.005019 0.000499 0.001971 0.004066 0.001685 0.002785 0.003040 0.014246 0.003433 0.001897 0.003142 0.003287 0.013223 0.002922 0.002854 0.002010 0.003025 0.003932 0.003667 0.003277 0.004807 0.912886 0.009816 0.006138 0.002159 0.012806 0.004005 0.003302 0.006298 0.013424 0.006442 0.007186 0.005541 0.002612 0.863126 0.003621 0.016056 0.005184 0.021550 0.010497 0.005335 0.001514 0.003204 0.044947 0.001875 0.008016 0.005781 0.001808 0.876042 0.002475 0.002497 0.006103 0.003013 0.001743 0.008815 0.003147 0.003190 0.005671 0.012619 0.005100 0.004170 0.001008 0.001982 0.006786 0.002243 0.001583 0.003173 0.013775 0.002148 0.001901 0.027970 0.003469 0.825922 0.062138 0.002129 0.002781 0.004220 0.004169 0.004037 0.005944 0.020271 0.001613 0.003728 0.162138 0.005362 0.002558 0.004529 0.009924 0.007332 0.002973 0.036358 0.005167 0.032475 0.356024 0.004528 0.003853 0.004576 0.004960 0.013661 0.084845 0.251118 0.001888 0.005733 0.008437 0.002369 0.002494 0.002980 0.007152 0.002498 0.001204 0.636897 0.003682 0.160204 0.013484 0.002954 0.001869 0.002451 0.002673 0.004964 0.008124 0.131158 0.001005 0.003400 0.219716 0.003356 0.022296 0.089398 0.005468 0.069752 0.065032 0.008486 0.036038 0.014437 0.006767 0.024272 0.009019 0.025154 0.022601 0.217846 0.138195 0.013840 0.001690 0.006638 0.528300 0.004986 0.002049 0.002256 0.001642 0.317586 0.001122 0.002434 0.001929 0.003608 0.001755 0.003382 0.003578 0.002309 0.002283 0.09 motif=5 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 2, iter= 20 em: w= 8, psites= 2, iter= 30 em: w= 8, psites= 2, iter= 40 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 8, iter= 20 em: w= 8, psites= 8, iter= 30 em: w= 8, psites= 8, iter= 40 em: w= 8, psites= 12, iter= 0 em: w= 8, psites= 12, iter= 10 em: w= 8, psites= 12, iter= 20 em: w= 8, psites= 12, iter= 30 em: w= 8, psites= 12, iter= 40 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 2, iter= 10 em: w= 11, psites= 2, iter= 20 em: w= 11, psites= 2, iter= 30 em: w= 11, psites= 2, iter= 40 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 8, iter= 10 em: w= 11, psites= 8, iter= 20 em: w= 11, psites= 8, iter= 30 em: w= 11, psites= 8, iter= 40 em: w= 11, psites= 12, iter= 0 em: w= 11, psites= 12, iter= 10 em: w= 11, psites= 12, iter= 20 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 2, iter= 10 em: w= 15, psites= 2, iter= 20 em: w= 15, psites= 2, iter= 30 em: w= 15, psites= 2, iter= 40 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 4, iter= 10 em: w= 15, psites= 4, iter= 20 em: w= 15, psites= 4, iter= 30 em: w= 15, psites= 4, iter= 40 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 15, psites= 12, iter= 10 em: w= 15, psites= 12, iter= 20 em: w= 15, psites= 12, iter= 30 em: w= 15, psites= 12, iter= 40 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 2, iter= 10 em: w= 29, psites= 2, iter= 20 em: w= 29, psites= 2, iter= 30 em: w= 29, psites= 2, iter= 40 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 41, psites= 12, iter= 10 em: w= 41, psites= 12, iter= 20 em: w= 41, psites= 12, iter= 30 em: w= 41, psites= 12, iter= 40 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 9376 0.011651 0.008175 0.000508 0.001072 0.006021 0.002078 0.001549 0.002897 0.065753 0.002113 0.003077 0.022668 0.003245 0.770434 0.017134 0.002343 0.002544 0.003963 0.003941 0.003975 0.005353 0.016934 0.002769 0.061208 0.690133 0.071871 0.004247 0.006396 0.004890 0.020768 0.002429 0.008556 0.005944 0.012444 0.005647 0.004803 0.002995 0.004363 0.005560 0.072017 0.015199 0.057480 0.001413 0.002845 0.036250 0.002840 0.077554 0.097468 0.006533 0.015774 0.066312 0.009941 0.206890 0.017608 0.060913 0.026070 0.010944 0.033149 0.135919 0.036890 0.027833 0.067898 0.002048 0.061168 0.619601 0.042435 0.004814 0.007633 0.007163 0.019251 0.035752 0.014922 0.007589 0.084544 0.008248 0.005781 0.003530 0.005624 0.006802 0.038440 0.049642 0.032057 0.001828 0.004345 0.168706 0.003409 0.015188 0.016875 0.005592 0.225401 0.075084 0.006270 0.016993 0.009494 0.004165 0.018097 0.005799 0.012262 0.011032 0.231750 0.016121 0.010319 0.001265 0.146176 0.085348 0.002315 0.017950 0.033716 0.004858 0.012240 0.011395 0.008130 0.291448 0.014561 0.006706 0.078303 0.008370 0.086582 0.152304 0.027773 0.021532 0.070244 0.059708 0.006518 0.091137 0.035687 0.003878 0.005504 0.005994 0.004391 0.002862 0.116977 0.004999 0.022734 0.006996 0.003639 0.004357 0.003516 0.005521 0.007481 0.017295 0.653691 0.000989 0.002353 0.018407 0.004857 0.003452 0.005865 0.148085 0.005916 0.007399 0.028207 0.006659 0.386059 0.013932 0.005633 0.004245 0.005991 0.006595 0.071379 0.074134 0.031739 0.004522 0.166925 0.032376 0.002504 0.136428 0.101552 0.005577 0.240671 0.012353 0.008547 0.098582 0.015221 0.007159 0.026044 0.009902 0.085082 0.082008 0.088850 0.024846 0.013259 0.001777 0.007260 0.147974 0.000571 0.233064 0.368498 0.001419 0.006848 0.069876 0.003341 0.018778 0.005857 0.002640 0.010300 0.005412 0.086256 0.008373 0.012641 0.009556 0.006043 0.000465 0.002087
Time 103.20 secs.
BL MOTIF 5 width=42 seqs=11 H.sapiens ( 572) GFLEDYAFVVRGLLDLYEASQESAWLEWALRLQDTQDKLFWD 1 D.melanogaster ( 591) GFLDDYAFLIKGLLDYYKATLDVDVLHWAKALQDTQDKLFWD 1 A.aeolicus ( 481) GFLEDYAYFIWGLMELYEATLDSKYLEEVIKLQEIQIKHFWD 1 B.subtilis ( 475) GFIDDYAFLLWAYLDLYEASFDLSYLQKAKKLTDDMISLFWD 1 C.elegans ( 520) AFSDDYAFLIQALLDLYTTVGKDEYLKKAVELQKICDVKFWN 1 A.thaliana ( 668) AFLDDYAFLISGLLDLYENGGGIEWLKWAIKLQETQAKDHDG 1 M.thermoautotrophicum ( 472) GKLDDYAFLIWGLLEMYDATLREGYIRKALELTEILRDNFRD 1 A.fulgidus ( 460) GLSEDYIFFARGLLALFEVTQRHEYLEKCFEIVDSAVEKFWD 1 D.radiodaurans ( 487) GLLEDHALYGLGLVALFQAGGDLAHLHWARELWNIVRRDFWD 1 M.tuberculosis ( 464) AILEDHAMLATGLLALYQLTSEGAWLTAATGLLDTAVAHFGD 1 A.pernix ( 469) GMLPDYAYTAAALASLYTVSGDTEALGAAKSLAKGMIDLLWS 1 //
log-odds matrix: alength= 20 w= 42 n= 7545 bayes= 10.4473 E= 1.4e-090 90 -226 -349 -429 -483 340 -397 -419 -368 -519 -399 -231 -390 -359 -387 -202 -270 -365 -455 -466 -330 -186 -484 -472 385 -453 -386 59 -35 28 105 -358 -406 -358 -436 -318 -282 -170 -253 -138 -336 -225 -500 -442 -172 -466 -368 80 -368 285 -21 -357 -389 -276 -363 41 -260 -127 -337 -319 -272 -548 266 248 -588 -366 -322 -401 -189 -460 -372 -186 59 -78 -348 -273 -271 -365 -608 -492 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -479 -328 -523 -542 -35 -519 250 -347 -456 -369 -341 -346 -497 -370 -447 -408 -414 -390 -155 430 310 -57 -405 -386 -327 -201 -376 39 -337 -298 -218 -290 -410 -307 -363 -82 -174 -113 -384 -388 -373 -189 -464 -476 415 -470 -365 -177 -430 -102 11 -365 -401 -400 -466 -318 -364 -252 -211 75 -268 -167 -466 -411 131 -402 -308 -25 -334 249 -28 -299 -364 -255 -338 -285 39 41 -282 55 109 -125 -437 -397 -190 -16 -308 338 -315 0 -69 -265 -360 -265 -341 -239 -143 103 -297 -246 -6 -216 -138 -93 -278 -225 -113 -189 95 -51 -153 -35 -218 143 123 53 83 -191 321 -225 90 -226 -349 -429 -483 340 -397 -419 -368 -519 -399 -231 -390 -359 -387 -202 -270 -365 -455 -466 -386 -261 -527 -473 -158 -505 -360 -68 -399 302 -39 -383 -416 -299 -388 -395 -303 -171 -312 47 -122 -223 -490 -429 -167 -467 -359 -38 -357 289 115 -350 -377 -262 -350 -350 -258 -11 -332 -316 115 -401 275 140 -499 -312 -267 -379 -181 -440 -351 -97 -331 -94 -311 32 -234 -355 -526 -422 -363 -241 -508 -448 -165 -490 -372 -46 -376 295 125 -370 -393 -276 -366 -375 -280 -148 -334 7 -449 -306 -507 -516 209 -507 -168 -321 -438 -346 -315 -332 -477 -352 -429 -384 -392 -365 -139 428 -239 -435 73 243 -482 -336 -263 -345 68 -402 -308 -161 -308 225 -265 -222 163 -321 -509 -407 273 -39 -361 -333 -253 -193 -307 -119 -274 -91 -143 31 -371 -243 -307 -71 15 75 -320 -303 -188 -158 -398 -441 -403 81 -373 -256 -335 -409 -263 -184 -363 -278 -367 189 343 23 -440 -437 -165 -135 -246 -216 71 188 -197 -61 -141 108 -94 -121 -283 210 -206 44 -107 -91 -278 -207 -236 -337 272 119 -414 -5 -206 -317 68 -375 -281 -66 -303 -71 117 -174 -183 -308 -436 -344 -137 -181 31 21 -240 -7 121 83 -36 36 -122 -43 -220 -13 -117 120 84 35 -293 -211 116 -291 58 196 -354 1 -167 -265 79 -320 -222 -62 -256 -31 -169 47 -130 -256 -387 -292 -62 -147 -315 -308 98 -341 118 -161 -253 -220 -162 -204 -305 -222 -272 -196 -213 -7 290 360 -379 -254 -534 -474 -173 -512 -399 88 -402 301 -25 -396 -416 -300 -392 -401 -296 -146 -351 -341 -149 -231 -141 137 -295 -4 210 -212 159 -266 -167 -38 -224 144 56 -88 82 -210 -322 -234 69 -287 -218 24 -378 -303 -177 -268 256 -323 -233 -113 -308 -50 -71 -177 -165 -272 389 -306 303 155 -378 -357 -311 -175 -350 -207 -309 -295 -202 -268 -402 -282 -335 -54 -156 -9 -358 -369 -167 -86 -357 -307 77 -300 -231 205 184 73 -37 -193 -299 -179 23 -178 88 89 -241 -190 -7 -236 -133 174 -299 -4 -120 -216 201 -270 -171 -39 -226 -4 53 52 -87 -213 -328 -239 -379 -254 -534 -474 -173 -512 -399 88 -402 301 -25 -396 -416 -300 -392 -401 -296 -146 -351 -341 -19 -113 -299 -227 -177 -295 -168 -26 -176 -15 -61 -156 -286 353 -221 -165 151 64 166 -211 -283 -406 284 168 -499 -302 -258 -391 136 -454 -368 136 -342 -110 -314 -216 -241 -372 -523 -417 -210 -174 20 -264 -309 -9 -244 262 -202 -290 -187 -81 -322 -167 -270 62 307 -181 -370 -318 69 237 -373 -318 -148 -305 -234 10 -242 9 252 -203 -305 302 -271 -184 -98 89 -244 -196 -6 -122 165 -222 -187 -292 -212 248 -154 -146 -75 -152 -292 -129 118 -165 -105 148 -276 -219 -5 -222 111 33 -282 -219 -109 -202 229 -257 -157 -28 -212 5 48 54 -73 19 -315 -224 -208 -271 132 -142 -350 -231 226 -271 160 137 -234 156 -273 -58 -143 -117 -131 -272 -380 -283 -373 -187 -461 -474 424 -469 -58 -183 -429 -113 -195 -364 -399 -402 -467 -315 -366 -255 -210 -66 -423 -270 -253 -440 -139 -270 -366 -338 -369 -269 -278 -311 -435 -311 -233 -377 -351 -336 563 -172 -351 -312 377 -137 -425 -177 -270 -353 -348 -453 -376 43 -436 -286 -389 -138 -318 -372 -430 -384
letter-probability matrix: alength= 20 w= 42 n= 7545 E= 1.4e-090 0.172008 0.002689 0.005392 0.004075 0.001557 0.756574 0.001825 0.002151 0.004152 0.002792 0.001517 0.006337 0.003156 0.002632 0.004052 0.015127 0.006965 0.004739 0.000752 0.001507 0.009364 0.003549 0.002114 0.003023 0.642081 0.003092 0.001969 0.059125 0.041669 0.123746 0.050026 0.002627 0.002835 0.002656 0.002874 0.006809 0.006417 0.018294 0.003047 0.014683 0.008939 0.002723 0.001899 0.003739 0.013461 0.002821 0.002221 0.068200 0.004145 0.736096 0.020831 0.002649 0.003177 0.004707 0.004789 0.081619 0.007492 0.024602 0.001702 0.004190 0.013930 0.000290 0.382967 0.444502 0.000755 0.005661 0.003072 0.002427 0.014356 0.004196 0.001834 0.008637 0.071153 0.018475 0.005299 0.009277 0.006940 0.004710 0.000260 0.001262 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.003329 0.001333 0.001620 0.001865 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0.008839 0.012938 0.000772 0.434118 0.256337 0.001399 0.008783 0.004766 0.002615 0.135996 0.004390 0.001881 0.080606 0.004420 0.014868 0.006732 0.013782 0.008513 0.004489 0.000470 0.002126 0.021457 0.003864 0.069773 0.012772 0.005228 0.067108 0.005255 0.241146 0.013053 0.013705 0.006565 0.017924 0.005054 0.009991 0.009130 0.094670 0.380880 0.016862 0.001352 0.004211 0.148756 0.066924 0.004586 0.008799 0.015983 0.008652 0.005641 0.041957 0.009909 0.108314 0.138262 0.007691 0.005683 0.257054 0.009022 0.017183 0.022900 0.109585 0.003245 0.009855 0.088185 0.005540 0.190763 0.017080 0.012178 0.009419 0.006571 0.218312 0.018213 0.037055 0.014285 0.010942 0.006225 0.012991 0.134403 0.019597 0.021845 0.165387 0.002603 0.008406 0.088766 0.002764 0.131422 0.100021 0.006280 0.015616 0.013418 0.009661 0.259781 0.017180 0.008108 0.025836 0.010836 0.032887 0.082768 0.089331 0.027401 0.067864 0.001992 0.008068 0.021802 0.001969 0.151858 0.029918 0.003931 0.014445 0.136621 0.005999 0.161118 0.263511 0.004744 0.092493 0.007133 0.021193 0.021984 0.027338 0.018275 0.009026 0.001268 0.005373 0.006955 0.003540 0.002481 0.002977 0.836797 0.002776 0.019116 0.011046 0.002720 0.046689 0.006225 0.002517 0.002977 0.001955 0.002320 0.006916 0.003573 0.010161 0.004120 0.024142 0.004911 0.001982 0.010496 0.003772 0.017010 0.011027 0.002253 0.003757 0.004123 0.015838 0.003514 0.003646 0.002310 0.003693 0.011810 0.004503 0.003964 0.005770 0.874004 0.011617 0.008084 0.001481 0.828038 0.030864 0.002332 0.020889 0.004405 0.003391 0.004762 0.004412 0.001777 0.042230 0.002291 0.004366 0.003992 0.023642 0.004994 0.004494 0.0008 motif=6 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 2, iter= 20 em: w= 8, psites= 2, iter= 30 em: w= 8, psites= 2, iter= 40 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 8, iter= 20 em: w= 8, psites= 8, iter= 30 em: w= 8, psites= 8, iter= 40 em: w= 8, psites= 12, iter= 0 em: w= 8, psites= 12, iter= 10 em: w= 8, psites= 12, iter= 20 em: w= 8, psites= 12, iter= 30 em: w= 8, psites= 12, iter= 40 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 2, iter= 10 em: w= 11, psites= 2, iter= 20 em: w= 11, psites= 2, iter= 30 em: w= 11, psites= 2, iter= 40 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 8, iter= 10 em: w= 11, psites= 8, iter= 20 em: w= 11, psites= 8, iter= 30 em: w= 11, psites= 8, iter= 40 em: w= 11, psites= 12, iter= 0 em: w= 11, psites= 12, iter= 10 em: w= 11, psites= 12, iter= 20 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 2, iter= 10 em: w= 15, psites= 2, iter= 20 em: w= 15, psites= 2, iter= 30 em: w= 15, psites= 2, iter= 40 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 15, psites= 12, iter= 10 em: w= 15, psites= 12, iter= 20 em: w= 15, psites= 12, iter= 30 em: w= 15, psites= 12, iter= 40 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 93 0.002660
Time 132.33 secs.
BL MOTIF 6 width=27 seqs=11 A.aeolicus ( 194) YDEHFGGFGSAPKFPTPHNLMFLGRYY 1 B.subtilis ( 196) FDTIYGGFGQAPKFPMPHMLMYLLRYD 1 M.thermoautotrophicum ( 192) FDRKNGGFGSQQKFPTPHNIHFLLTYH 1 D.radiodaurans ( 206) YDAQFGGFGRAPKFPAPSTLDFLLTQP 1 A.thaliana ( 347) YDSEFGGFGSAPKFPRPVEIQLMLYHY 1 H.sapiens ( 255) YDEEYGGFAEAPKFPTPVILSFLFSYW 1 C.elegans ( 206) FDSRLGGFGRAPKFPKACDLDFLITFA 1 D.melanogaster ( 271) FDQTHGGFGSEPKFPEVPRLNFLFHGY 1 M.tuberculosis ( 194) QDTAHGGFGGAPKFPPSALLEALMRHY 1 A.fulgidus ( 191) TDYVNGGFGSAPKFHHAKAVELLLTHH 1 A.pernix ( 188) YDTAYGGFGRGMKFPMHHALLLLARAS 1 //
log-odds matrix: alength= 20 w= 27 n= 7725 bayes= 9.80938 E= 1.8e-075 -237 -155 -318 -313 252 -348 -28 -178 -259 -230 -174 -208 -310 61 -277 -201 18 -211 -103 362 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 -5 -216 -126 91 -277 -217 -107 -197 -15 -253 -153 -25 -210 142 47 122 205 -194 -311 66 62 -215 -126 91 -275 -216 121 67 92 -250 -151 -25 -209 143 48 -72 83 20 -309 -219 -269 -181 -348 -343 235 -375 208 -203 -288 -59 -199 176 -338 -249 -303 -230 -252 -237 -111 325 -305 -339 -351 -439 -512 371 -406 -458 -372 -560 -441 -245 -441 -389 -396 -297 -381 -448 -462 -479 -305 -339 -351 -439 -512 371 -406 -458 -372 -560 -441 -245 -441 -389 -396 -297 -381 -448 -462 -479 -413 -228 -494 -515 435 -491 -414 -228 -468 -224 -241 -402 -432 -440 -502 -356 -405 -299 -254 -113 -103 -278 -292 -379 -462 362 -353 -397 -312 -508 -379 -183 -391 -332 -338 -229 -315 -383 -413 -427 -183 -257 -144 27 -334 3 -142 -249 -26 -302 -205 -40 -256 143 181 243 -111 -247 -356 -268 293 -42 -293 -84 -316 -52 -319 -218 -258 -299 -205 -221 -384 18 -308 -60 -156 -117 -361 -361 -194 -263 -321 -317 -376 -332 -302 -288 -246 -339 79 -256 405 55 -301 -191 -205 -287 -456 -421 -402 -320 -498 -474 -548 -475 -398 -358 411 -500 -397 -306 -447 -345 -80 -421 -355 -458 -455 -494 -413 -228 -494 -515 435 -491 -414 -228 -468 -224 -241 -402 -432 -440 -502 -356 -405 -299 -254 -113 -226 -290 -349 -350 -401 -357 87 -322 -279 -372 -341 -283 415 -238 -333 -223 -236 -320 -475 -437 -5 -217 -127 29 -277 -217 121 -196 93 -252 223 -26 43 7 48 -73 204 -194 -310 -220 21 -252 -320 -316 -374 -324 63 -283 -246 -338 -302 -251 379 -205 -301 -10 -200 -27 -452 -416 -5 219 -175 -132 -228 -240 310 -108 75 -200 -115 -63 47 -35 -137 47 -82 118 -290 -206 62 -205 34 27 -264 -218 -109 71 -19 -50 135 206 -211 2 46 -74 83 -176 -304 -217 -375 -249 -558 -503 -198 -529 -432 184 -433 279 -53 -417 -445 -335 -428 -422 -295 50 -380 -365 -134 -219 111 93 -279 -216 121 -199 -16 -54 223 133 -210 143 -100 54 -70 -196 -312 -221 -139 -196 -472 -480 403 -469 -338 -169 -427 16 -182 -359 -408 -387 -457 -322 -346 -240 -206 51 -376 -252 -526 -465 -169 -506 -391 -49 -394 302 137 -388 -408 -291 -383 -393 -293 -155 -345 -336 -53 -141 -444 -389 127 -48 -297 107 -310 233 147 -274 -343 -238 -319 -255 -161 -69 -280 -243 -202 -231 -198 -169 -300 -275 125 -215 -37 -294 -195 -72 -280 -56 214 52 275 -223 -338 77 -87 -117 -269 -262 160 -105 206 -142 -212 -197 -137 -162 -267 15 -232 -156 -181 -173 -92 354 -86 -115 -78 -251 131 -299 153 -140 -199 -195 -134 -159 -51 -174 -226 -39 -174 -170 98 356
letter-probability matrix: alength= 20 w= 27 n= 7725 E= 1.8e-075 0.017806 0.004416 0.006695 0.009138 0.255517 0.006414 0.023528 0.011425 0.008815 0.020750 0.007203 0.007443 0.005516 0.048374 0.008688 0.015261 0.051366 0.013785 0.008622 0.469238 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.088721 0.002884 0.025312 0.149754 0.006508 0.015889 0.013633 0.010035 0.047870 0.017651 0.008342 0.026333 0.011019 0.085223 0.081988 0.143383 0.187527 0.015422 0.002046 0.060459 0.141437 0.002903 0.025355 0.149972 0.006614 0.016011 0.066019 0.062497 0.100648 0.018003 0.008474 0.026417 0.011115 0.085645 0.082415 0.037495 0.080550 0.067972 0.002074 0.008386 0.014285 0.003684 0.005458 0.007385 0.225943 0.005321 0.120571 0.009605 0.007213 0.067850 0.006058 0.106509 0.004546 0.005643 0.007254 0.012465 0.007904 0.011508 0.008150 0.362648 0.011150 0.001229 0.005337 0.003796 0.001274 0.936810 0.001712 0.001643 0.004026 0.002105 0.001130 0.005748 0.002224 0.002138 0.003795 0.007883 0.003238 0.002662 0.000716 0.001385 0.011150 0.001229 0.005337 0.003796 0.001274 0.936810 0.001712 0.001643 0.004026 0.002105 0.001130 0.005748 0.002224 0.002138 0.003795 0.007883 0.003238 0.002662 0.000716 0.001385 0.005258 0.002657 0.001971 0.002253 0.903964 0.002384 0.001617 0.008082 0.002074 0.021639 0.004525 0.001935 0.002366 0.001507 0.001823 0.005204 0.002728 0.007489 0.003031 0.017490 0.044947 0.001875 0.008016 0.005781 0.001808 0.876042 0.002475 0.002497 0.006103 0.003013 0.001743 0.008815 0.003147 0.003190 0.005671 0.012619 0.005100 0.004170 0.001008 0.001982 0.025853 0.002171 0.022303 0.096564 0.004393 0.073101 0.010684 0.006983 0.044279 0 motif=7 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 2, iter= 20 em: w= 8, psites= 2, iter= 30 em: w= 8, psites= 2, iter= 40 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 12, iter= 0 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 4, iter= 10 em: w= 11, psites= 4, iter= 20 em: w= 11, psites= 4, iter= 30 em: w= 11, psites= 4, iter= 40 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 12, iter= 0 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 2, iter= 10 em: w= 15, psites= 2, iter= 20 em: w= 15, psites= 2, iter= 30 em: w= 15, psites= 2, iter= 40 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 4, iter= 10 em: w= 15, psites= 4, iter= 20 em: w= 15, psites= 4, iter= 30 em: w= 15, psites= 4, iter= 40 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 15, psites= 12, iter= 10 em: w= 15, psites= 12, iter= 20 em: w= 15, psites= 12, iter= 30 em: w= 15, psites= 12, iter= 40 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 4, iter= 10 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 8, iter= 10 em: w= 21, psites= 8, iter= 20 em: w= 21, psites= 8, iter= 30 em: w= 21, psites= 8, iter= 40 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 4, iter= 10 em: w= 29, psites= 4, iter= 20 em: w= 29, psites= 4, iter= 30 em: w= 29, psites= 4, iter= 40 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 8, iter= 10 em: w= 29, psites= 8, iter= 20 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 2, iter= 10 em: w= 41, psites= 2, iter= 20 em: w= 41, psites= 2, iter= 30 em: w= 41, psites= 2, iter= 40 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 .012558 0.005797 0.023779 0.008012 0.085558 0.208195 0.330681 0.020922 0.010723 0.001491 0.005953 0.703877 0.009628 0.007939 0.044446 0.004954 0.049825 0.003136 0.008632 0.008855 0.012815 0.005813 0.006805 0.003303 0.036035 0.007018 0.040655 0.015372 0.026325 0.001443 0.003123 0.024080 0.002088 0.006579 0.008867 0.003288 0.007161 0.003508 0.005319 0.009655 0.009748 0.041699 0.005311 0.780698 0.046441 0.007349 0.016335 0.010937 0.008116 0.000747 0.002072 0.005687 0.001405 0.001921 0.002977 0.000998 0.002660 0.001815 0.003270 0.920150 0.003196 0.001539 0.003766 0.002124 0.002915 0.033907 0.003337 0.003856 0.002481 0.000753 0.001245 0.005258 0.002657 0.001971 0.002253 0.903964 0.002384 0.001617 0.008082 0.002074 0.021639 0.004525 0.001935 0.002366 0.001507 0.001823 0.005204 0.002728 0.007489 0.003031 0.017490 0.019288 0.001726 0.005414 0.007073 0.002764 0.006004 0.052292 0.004217 0.007688 0.007768 0.002268 0.004404 0.836165 0.006094 0.005904 0.013162 0.008797 0.006468 0.000653 0.001853 0.088996 0.002872 0.025149 0.097592 0.006526 0.015890 0.066129 0.010099 0.101066 0.017796 0.113230 0.026247 0.063552 0.033248 0.082811 0.037236 0.185698 0.015496 0.002057 0.008311 0.106259 0.002256 0.006595 0.008939 0.003334 0.007565 0.044165 0.005520 0.009654 0.009798 0.002977 0.005507 0.651531 0.007655 0.007329 0.057568 0.011310 0.049128 0.000767 0.002142 0.088810 0.059013 0.018067 0.031977 0.009137 0.013552 0.244773 0.018569 0.089532 0.025424 0.010815 0.020258 0.065300 0.024921 0.022892 0.085332 0.025597 0.134526 0.002363 0.009142 0.141841 0.003124 0.077000 0.096435 0.007124 0.015755 0.013437 0.064333 0.046462 0.072024 0.061473 0.130613 0.010921 0.032295 0.081521 0.036766 0.080734 0.017479 0.002143 0.008520 0.006839 0.002301 0.001272 0.002442 0.011230 0.001822 0.001425 0.140019 0.002649 0.706030 0.016674 0.001742 0.002155 0.003107 0.003049 0.003312 0.005868 0.083762 0.001261 0.003041 0.036501 0.002824 0.131244 0.151802 0.006440 0.015950 0.066239 0.009865 0.047626 0.069964 0.113204 0.078947 0.011030 0.085697 0.029554 0.089668 0.027944 0.015228 0.002028 0.008244 0.035057 0.003321 0.002302 0.002866 0.724338 0.002770 0.002747 0.012135 0.002745 0.114250 0.006808 0.002604 0.002794 0.002179 0.002486 0.006587 0.004108 0.011218 0.004214 0.054471 0.006786 0.002243 0.001583 0.003173 0.013775 0.002148 0.001901 0.027970 0.003469 0.825922 0.062138 0.002129 0.002781 0.004220 0.004169 0.004037 0.005944 0.020271 0.001613 0.003728 0.063796 0.004859 0.002791 0.005388 0.107524 0.051424 0.003653 0.082587 0.006178 0.511477 0.066919 0.004697 0.004365 0.006122 0.006508 0.010517 0.014818 0.036742 0.002532 0.007102 0.022668 0.002605 0.015368 0.024801 0.005555 0.010651 0.067731 0.008840 0.041111 0.013334 0.006243 0.019094 0.006773 0.021601 0.261515 0.088545 0.303897 0.012655 0.001689 0.065322 0.050364 0.005746 0.009399 0.012949 0.134376 0.034497 0.119091 0.014642 0.012253 0.025973 0.009317 0.010203 0.007415 0.035169 0.011872 0.020840 0.012934 0.017931 0.009327 0.445702 0.050854 0.005825 0.035319 0.014043 0.109956 0.008984 0.082608 0.014875 0.013404 0.026362 0.009490 0.010445 0.033051 0.009512 0.012359 0.047089 0.013531 0.018272 0.034701 0.449321
Time 155.56 secs.
BL MOTIF 7 width=28 seqs=8 M.thermoautotrophicum ( 526) VIVRPKESMDGAIPSGNSVQMQNLLRLG 1 A.aeolicus ( 538) IPVRKKEVYDGAIPSGNSVSAYNLIRLG 1 B.subtilis ( 532) LIVREKEVYDGAVPSGNSVAAVQLLRLG 1 H.sapiens ( 630) LPLRLKDDQDGAEPSANSVSAHNLLRLH 1 D.melanogaster ( 648) VIVRLKEDHDGAEPCGNSVSAHNLVLLA 1 C.elegans ( 575) VSVRMIEDQDGAEPTATSIASNNLLRLY 1 M.tuberculosis ( 522) LMLRPSDPLDGATPSGASSIAEALLTAG 1 A.fulgidus ( 515) LGIRLKNFHDSPTQSVNGSAPQLLLALS 1 //
log-odds matrix: alength= 20 w= 28 n= 7713 bayes= 10.6491 E= 3.5e-038 -328 -202 -578 -544 -220 -522 -480 192 -474 214 -92 -426 -485 -403 -497 -424 -253 250 -413 -375 -136 -80 -300 -259 -150 22 -209 278 -184 -109 190 -157 199 -143 -230 63 -78 -21 -242 -190 -259 -172 -508 -492 -262 -488 -444 188 -437 96 -137 -393 -444 -401 -456 -392 -211 330 -445 -402 -437 -293 -494 -514 -511 -445 -289 -415 -174 -473 -429 -323 -409 -254 398 -399 -389 -500 -397 -465 -151 -167 -170 29 -211 -248 -144 -86 90 154 163 -74 178 -34 -121 -110 -87 -119 -287 -219 -348 -291 -426 -382 -491 -425 -326 -81 400 -434 -337 -247 -408 -240 -53 -139 -295 -383 -423 -435 -269 -449 161 295 -532 -304 -269 -391 -181 -455 -369 150 -327 -82 -326 -221 -240 -366 -558 -440 -133 -131 205 -128 85 -224 -139 -65 -75 -168 -89 -47 88 -47 -150 71 -70 153 -269 -186 -224 -156 -252 -242 -35 -310 349 -132 -177 -45 130 -74 -288 205 -179 -168 -152 -161 -179 229 -370 -324 387 -152 -437 -382 -294 -366 -377 -464 -389 -45 -452 -312 -409 -312 -346 -385 -438 -400 -222 -265 -278 -366 -450 359 -340 -386 -300 -496 -368 -169 -378 -318 -327 -47 -301 -371 -402 -415 309 -79 -417 -409 -377 -203 -394 -285 -369 -369 -274 -287 77 -317 -386 -93 -171 -183 -418 -424 -189 -121 -277 174 -196 -322 -253 245 -205 -140 -81 -190 -317 -162 -267 -191 207 126 -301 -242 -183 -251 -307 -304 -366 -319 -291 -280 -235 -330 -299 -243 408 83 -290 -180 -194 -277 -444 -408 -182 124 -330 -399 -339 -302 -319 -288 -265 -376 -262 -99 -298 -264 -289 352 159 -332 -380 -335 75 -178 -333 -402 -437 327 -371 -338 -342 -454 -345 -211 -355 -325 -361 -161 -221 21 -427 -432 -130 -235 -205 -377 -379 -303 -123 -270 -271 -419 -321 468 -355 -210 -339 -139 -25 -334 -366 -358 -156 -137 -338 -422 -406 27 -357 -355 -332 -438 -331 -151 -329 -302 -358 363 20 -328 -443 -404 -178 -124 -420 -403 -263 -393 -346 161 -349 -186 -148 -310 -361 -318 -360 103 -147 339 -396 -358 209 -84 -247 -209 -267 -199 -218 103 -144 -241 -155 -133 -281 132 -210 199 -90 -124 -326 -277 286 -30 -356 -333 -303 -170 -326 -201 -281 -286 98 -241 -2 -251 -315 46 -139 -109 -351 -352 -172 -197 -149 2 -224 -243 353 -213 -62 -254 -157 127 -231 223 -109 -98 -97 1 -268 77 -110 -232 -185 -255 -334 -292 -112 -223 -164 -140 -250 451 -316 39 -237 -128 -162 -272 -341 -309 -401 -277 -536 -496 -201 -499 -412 -81 -422 313 -57 -411 -428 -324 -412 -417 -322 -184 -369 -355 -341 -218 -512 -456 -168 -486 -385 125 -385 283 -19 -372 -401 -289 -379 -375 -260 58 -343 -327 -6 -173 -277 -224 -287 -283 -178 -148 -32 -29 -165 -136 -290 -80 320 -164 85 -174 -313 -276 -70 -215 -487 -431 -165 -436 -362 -36 -359 296 -12 -348 -376 -265 -353 -327 -253 -129 -331 -315 -50 -236 -222 -268 -360 322 69 -301 -204 -393 -288 -109 -329 -196 -261 -3 -215 -298 -373 27
letter-probability matrix: alength= 20 w= 28 n= 7713 E= 3.5e-038 0.009493 0.003177 0.001108 0.001843 0.009639 0.001917 0.001026 0.148047 0.001982 0.450538 0.012767 0.001643 0.001639 0.001939 0.001888 0.003250 0.007841 0.336415 0.001008 0.002838 0.035933 0.007414 0.007584 0.013271 0.015737 0.083267 0.006710 0.270004 0.014828 0.047771 0.089705 0.010575 0.187139 0.011753 0.012016 0.094992 0.026356 0.051400 0.003292 0.010254 0.015282 0.003926 0.001793 0.002640 0.007235 0.002428 0.001315 0.144447 0.002567 0.198588 0.009338 0.002066 0.002177 0.001978 0.002503 0.004060 0.010519 0.583971 0.000804 0.002361 0.004442 0.001697 0.001971 0.002265 0.001285 0.003271 0.003842 0.002209 0.015877 0.003841 0.001230 0.003347 0.002774 0.005452 0.935037 0.003887 0.003062 0.001860 0.001128 0.001523 0.032380 0.004060 0.018623 0.097599 0.010317 0.012857 0.010548 0.021662 0.099436 0.295800 0.074642 0.018818 0.162251 0.025170 0.025537 0.028681 0.024743 0.026069 0.002416 0.008392 0.008250 0.001714 0.003164 0.005636 0.001475 0.003763 0.002985 0.022409 0.851435 0.005037 0.002323 0.005686 0.002788 0.006035 0.040882 0.023544 0.005876 0.004179 0.000940 0.001879 0.014267 0.000574 0.185219 0.615138 0.001112 0.008711 0.004424 0.002614 0.015102 0.004355 0.001870 0.088704 0.004879 0.018041 0.006180 0.013336 0.008587 0.004704 0.000369 0.001813 0.036628 0.005211 0.250668 0.032802 0.080287 0.015169 0.010861 0.025047 0.031695 0.031792 0.013034 0.022710 0.086611 0.022962 0.020964 0.100738 0.027951 0.171564 0.002738 0.010567 0.019521 0.004375 0.010561 0.014884 0.034873 0.008317 0.321777 0.015669 0.015563 0.074922 0.059178 0.018798 0.006386 0.131831 0.017171 0.019181 0.015746 0.019462 0.005082 0.186701 0.007101 0.001366 0.889213 0.027866 0.002153 0.005074 0.003726 0.003111 0.003881 0. motif=8 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 2, iter= 20 em: w= 8, psites= 2, iter= 30 em: w= 8, psites= 2, iter= 40 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 12, iter= 0 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 4, iter= 10 em: w= 11, psites= 4, iter= 20 em: w= 11, psites= 4, iter= 30 em: w= 11, psites= 4, iter= 40 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 12, iter= 0 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 2, iter= 10 em: w= 15, psites= 2, iter= 20 em: w= 15, psites= 2, iter= 30 em: w= 15, psites= 2, iter= 40 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 4, iter= 10 em: w= 15, psites= 4, iter= 20 em: w= 15, psites= 4, iter= 30 em: w= 15, psites= 4, iter= 40 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 12, iter= 0 em: w= 15, psites= 12, iter= 10 em: w= 15, psites= 12, iter= 20 em: w= 15, psites= 12, iter= 30 em: w= 15, psites= 12, iter= 40 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 8, iter= 10 em: w= 21, psites= 8, iter= 20 em: w= 21, psites= 8, iter= 30 em: w= 21, psites= 8, iter= 40 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 4, iter= 10 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 8, iter= 10 em: w= 29, psites= 8, iter= 20 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 2, iter= 10 em: w= 41, psites= 2, iter= 20 em: w= 41, psites= 2, iter= 30 em: w= 41, psites= 2, iter= 40 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 4, iter= 10 em: w= 41, psites= 4, iter= 20 em: w= 41, psites= 4, iter= 30 em: w= 41, psites= 4, iter= 40 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 004084 0.001621 0.023053 0.002051 0.003663 0.003488 0.007084 0.004116 0.004117 0.000847 0.002383 0.019833 0.002056 0.008815 0.006310 0.001962 0.863232 0.002709 0.002697 0.006630 0.003270 0.001884 0.009738 0.003430 0.003495 0.006131 0.044399 0.005638 0.004534 0.001085 0.002153 0.782556 0.007449 0.003367 0.004695 0.003261 0.017447 0.001862 0.005430 0.004122 0.007910 0.003597 0.004301 0.080435 0.003537 0.004084 0.032361 0.013858 0.016730 0.000972 0.002029 0.024914 0.005569 0.008883 0.266455 0.011410 0.007680 0.004940 0.213692 0.012829 0.038552 0.013750 0.008401 0.005243 0.010308 0.009329 0.016343 0.190289 0.142084 0.002195 0.007133 0.025916 0.002267 0.007216 0.009695 0.003527 0.007841 0.003802 0.005646 0.010439 0.010344 0.003040 0.005843 0.798691 0.056636 0.007947 0.017635 0.011777 0.008670 0.000815 0.002256 0.026090 0.030436 0.006169 0.005021 0.004239 0.008800 0.003136 0.005325 0.008490 0.007555 0.003906 0.015792 0.005997 0.005095 0.007992 0.708423 0.136586 0.005928 0.001265 0.003754 0.155151 0.003767 0.006024 0.004903 0.002155 0.689619 0.002180 0.003773 0.004948 0.004401 0.002203 0.007287 0.004038 0.003348 0.004841 0.020205 0.009785 0.068549 0.000913 0.001908 0.037454 0.002533 0.014650 0.005834 0.003209 0.008750 0.012212 0.006044 0.008100 0.005608 0.002603 0.803724 0.004036 0.007406 0.005664 0.023532 0.038175 0.005870 0.001393 0.003203 0.031241 0.004978 0.005845 0.004273 0.002662 0.085931 0.002398 0.003338 0.005315 0.004901 0.002434 0.011004 0.004812 0.003923 0.004939 0.760561 0.052175 0.006122 0.000820 0.002329 0.026873 0.005463 0.003295 0.004886 0.007173 0.004681 0.002590 0.119552 0.004740 0.028145 0.008646 0.003655 0.003872 0.003495 0.004876 0.125845 0.016391 0.621499 0.001133 0.003191 0.390817 0.007232 0.010956 0.018804 0.007006 0.017972 0.006279 0.080048 0.019513 0.019212 0.008237 0.012519 0.006716 0.079483 0.013766 0.244582 0.024262 0.025148 0.001845 0.005605 0.667778 0.010449 0.005159 0.007959 0.005448 0.022017 0.002975 0.009761 0.007551 0.014008 0.047520 0.005923 0.046449 0.005596 0.006675 0.084664 0.017245 0.027944 0.001547 0.003330 0.027992 0.003296 0.021595 0.081088 0.009392 0.013241 0.329459 0.008965 0.034568 0.017514 0.008113 0.075985 0.009516 0.149397 0.027858 0.031113 0.023058 0.059778 0.002754 0.065317 0.043025 0.002582 0.016873 0.013640 0.004376 0.009440 0.013107 0.008389 0.017087 0.038790 0.004267 0.714852 0.005267 0.041722 0.011416 0.025287 0.014691 0.009035 0.001658 0.004498 0.005699 0.001894 0.001479 0.002568 0.011029 0.002253 0.001639 0.022342 0.002846 0.891484 0.016272 0.001824 0.002431 0.003362 0.003412 0.003424 0.004854 0.016548 0.001366 0.003273 0.008663 0.002852 0.001741 0.003391 0.013876 0.002461 0.001977 0.093182 0.003696 0.726630 0.021138 0.002387 0.002936 0.004285 0.004276 0.004586 0.007475 0.088859 0.001631 0.003958 0.088565 0.003899 0.008914 0.016947 0.006060 0.010035 0.008302 0.014021 0.042443 0.083472 0.007646 0.012274 0.006337 0.018312 0.545826 0.019752 0.081731 0.017810 0.002016 0.005639 0.056691 0.002907 0.002079 0.004023 0.014193 0.003470 0.002323 0.030532 0.004415 0.796159 0.022151 0.002823 0.003493 0.005045 0.005137 0.006399 0.007840 0.024242 0.001775 0.004302 0.065181 0.002509 0.013063 0.012483 0.003657 0.666654 0.046030 0.004869 0.012945 0.006696 0.003267 0.014772 0.004811 0.008193 0.009677 0.060146 0.010210 0.007535 0.001331 0.045971
Time 181.99 secs.
BL MOTIF 8 width=23 seqs=10 D.melanogaster ( 773) GKTTVYICHERACRMPVTDPQQL 1 B.subtilis ( 658) GKTTVYICENFACQQPTTNIEEA 1 H.sapiens ( 758) DQATAYVCENQACSVPITDPCEL 1 D.radiodaurans ( 661) GGGQAYVCVNHACQLPTRDPAEL 1 A.aeolicus ( 660) GKTTYYLCRNYTCESPQIQSDKV 1 C.elegans ( 700) PKPAVYMCKGFVCDRPVKAIQEL 1 M.thermoautotrophicum ( 648) DGCTYYLCDGSKCHPPAEDPERV 1 M.tuberculosis ( 643) GADAAYVCRGRVCDLPVTSAAEL 1 A.pernix ( 647) GSPAFYICHGGVCKEPLRDEDRA 1 A.thaliana ( 837) EKVVALVCQHFTCSPPVFDSSSL 1 //
log-odds matrix: alength= 20 w= 23 n= 7773 bayes= 11.0756 E= 3.8e-038 -252 -310 82 -23 -466 324 -281 -400 -246 -490 -379 -84 2 -211 -320 -199 -266 -387 -439 -406 2 -235 -158 -123 -325 100 -137 -237 282 -291 -195 -47 -250 152 -88 61 -107 -234 -345 -261 13 241 34 -185 -258 11 -189 -130 -118 -229 -144 -105 178 -89 -191 -99 237 54 -323 -257 128 -143 -342 -323 -321 -287 -302 -169 -242 -301 -195 -169 -330 118 -294 -68 340 46 -381 -348 182 -132 -435 -397 110 -343 -227 -43 -317 -162 -101 -257 -362 -256 -334 -225 -161 207 -200 217 -451 -309 -517 -529 -30 -507 -188 -272 -445 -9 -272 -345 -482 -361 -437 -396 -392 -336 -155 440 -324 -218 -504 -497 -237 -486 -446 330 -415 73 157 -368 -466 -376 -458 -374 -242 240 -398 -350 -411 622 -546 -531 -488 -544 -492 -368 -524 -497 -393 -438 -533 -469 -500 -444 -359 -455 -580 -555 -136 -222 46 104 -283 -219 217 -202 102 -256 -156 -28 -211 152 130 -76 -72 28 -314 -224 -310 -332 -84 25 -466 224 158 -454 -201 -509 -439 349 -339 -171 -306 -135 -197 -450 -506 -365 -156 -154 -177 -143 206 -37 128 -157 -74 -216 -138 -73 -233 102 85 23 -109 -174 -162 249 201 -103 -320 -277 -249 -246 -259 -87 55 -213 -137 -189 -317 -172 -241 -125 171 195 -326 -280 -411 622 -546 -531 -488 -544 -492 -368 -524 -497 -393 -438 -533 -469 -500 -444 -359 -455 -580 -555 -131 -217 120 40 -277 -212 130 -197 100 -252 -152 -19 -206 221 57 129 -67 -194 -309 -219 -129 -181 -137 30 -240 -218 -111 -133 -24 43 147 -33 143 146 51 59 -64 39 -290 -207 -337 -374 -448 -460 -498 -436 -426 -430 -390 -475 -450 -387 432 -347 -435 -332 -344 -428 -541 -529 -30 -87 -371 -339 -185 -330 -261 128 -273 -36 -78 -235 -304 58 -287 -217 122 304 -287 -248 -148 -194 -156 26 56 -235 -123 87 99 -230 -137 -47 -229 -12 131 -84 261 -163 -304 -224 -168 -309 369 -133 -420 -333 -255 -348 -305 -443 -364 62 -414 -34 -361 -103 -292 -365 -428 -375 -31 -226 -265 -36 -332 -298 -253 136 -187 -298 -242 -189 348 -151 -253 88 -166 -233 -405 -352 73 224 126 109 -290 -217 -114 -209 -25 -265 -165 -23 -215 223 -111 61 -78 -205 -323 -232 -206 -293 -153 228 -371 -284 -163 -266 115 -316 -221 -94 -277 156 150 52 -144 -262 -375 -297 70 -192 -526 -480 -207 -435 -400 -3 -405 246 -75 -364 -423 -330 -416 -327 -229 158 -365 -331
letter-probability matrix: alength= 20 w= 23 n= 7773 E= 3.8e-038 0.016052 0.001508 0.106898 0.068227 0.001759 0.675109 0.004083 0.002454 0.009684 0.003412 0.001738 0.017594 0.047830 0.007372 0.006441 0.015475 0.007190 0.004044 0.000840 0.002291 0.093153 0.002533 0.020233 0.033909 0.004667 0.142710 0.011063 0.007573 0.375112 0.013549 0.006250 0.022673 0.008361 0.091197 0.032230 0.093654 0.021525 0.011752 0.001611 0.006245 0.100767 0.068445 0.076871 0.022120 0.007438 0.077152 0.007679 0.015912 0.023525 0.020845 0.008864 0.015114 0.162107 0.017124 0.015796 0.030962 0.234993 0.085975 0.001884 0.006426 0.223795 0.004791 0.005689 0.008497 0.004801 0.009761 0.003512 0.012188 0.009905 0.012708 0.006226 0.009761 0.004775 0.071829 0.007737 0.038317 0.479197 0.081824 0.001259 0.003427 0.324414 0.005157 0.002985 0.005091 0.095019 0.006649 0.005936 0.029020 0.005899 0.033133 0.011964 0.005294 0.003845 0.005374 0.005852 0.012916 0.014808 0.249904 0.004399 0.172341 0.004036 0.001516 0.001680 0.002040 0.036117 0.002125 0.007777 0.005957 0.002428 0.096104 0.003656 0.002879 0.001665 0.002606 0.002854 0.003964 0.002987 0.005771 0.006015 0.807823 0.009725 0.002848 0.001841 0.002541 0.008625 0.002457 0.001298 0.386647 0.002987 0.169044 0.071713 0.002453 0.001870 0.002349 0.002480 0.004611 0.008438 0.313572 0.001114 0.003386 0.005347 0.961850 0.001376 0.002007 0.001504 0.001651 0.000943 0.003060 0.001407 0.003251 0.001584 0.001508 0.001174 0.001233 0.001850 0.002827 0.003767 0.002529 0.000317 0.000816 0.035905 0.002764 0.083444 0.164524 0.006231 0.015657 0.128450 0.009690 0.107908 0.017305 0.008144 0.025870 0.010891 0.091017 0.146200 0.036298 0.027419 0.072185 0.002006 0.008092 0.010707 0.001292 0.033883 0.095120 0.001761 0.337556 0.085168 0.001692 0.013170 0.003000 0.001151 0.352240 0.004511 0.009688 0.007098 0.024231 0.011535 0.002621 0.000527 0.003048 0.031245 0.004432 0.017758 0.029606 0.184924 0.055184 0.069159 starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 2, iter= 20 em: w= 8, psites= 2, iter= 30 em: w= 8, psites= 2, iter= 40 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 8, iter= 20 em: w= 8, psites= 8, iter= 30 em: w= 8, psites= 8, iter= 40 em: w= 8, psites= 12, iter= 0 em: w= 8, psites= 12, iter= 10 em: w= 8, psites= 12, iter= 20 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 2, iter= 10 em: w= 11, psites= 2, iter= 20 em: w= 11, psites= 2, iter= 30 em: w= 11, psites= 2, iter= 40 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 4, iter= 10 em: w= 11, psites= 4, iter= 20 em: w= 11, psites= 4, iter= 30 em: w= 11, psites= 4, iter= 40 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 8, iter= 10 em: w= 11, psites= 8, iter= 20 em: w= 11, psites= 8, iter= 30 em: w= 11, psites= 8, iter= 40 em: w= 11, psites= 12, iter= 0 em: w= 11, psites= 12, iter= 10 em: w= 11, psites= 12, iter= 20 em: w= 11, psites= 12, iter= 30 em: w= 11, psites= 12, iter= 40 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 2, iter= 10 em: w= 15, psites= 2, iter= 20 em: w= 15, psites= 2, iter= 30 em: w= 15, psites= 2, iter= 40 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 8, iter= 10 em: w= 15, psites= 8, iter= 20 em: w= 15, psites= 8, iter= 30 em: w= 15, psites= 8, iter= 40 em: w= 15, psites= 12, iter= 0 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 4, iter= 10 em: w= 21, psites= 4, iter= 20 em: w= 21, psites= 4, iter= 30 em: w= 21, psites= 4, iter= 40 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 8, iter= 10 em: w= 21, psites= 8, iter= 20 em: w= 21, psites= 8, iter= 30 em: w= 21, psites= 8, iter= 40 em: w= 21, psites= 12, iter= 0 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 4, iter= 10 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 8, iter= 10 em: w= 29, psites= 8, iter= 20 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 2, iter= 10 em: w= 41, psites= 2, iter= 20 em: w= 41, psites= 2, iter= 30 em: w= 41, psites= 2, iter= 40 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 4, iter= 10 em: w= 41, psites= 4, iter= 20 em: w= 41, psites= 4, iter= 30 em: w= 41, psites= 4, iter= 40 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 0.013207 0.031710 0.022847 0.009229 0.018903 0.009401 0.064363 0.107052 0.072232 0.021218 0.017730 0.005727 0.214070 0.371668 0.006302 0.006627 0.011710 0.007933 0.013017 0.004749 0.021486 0.077912 0.023344 0.009308 0.008475 0.005241 0.009621 0.011133 0.025919 0.148607 0.229622 0.001843 0.005482 0.005347 0.961850 0.001376 0.002007 0.001504 0.001651 0.000943 0.003060 0.001407 0.003251 0.001584 0.001508 0.001174 0.001233 0.001850 0.002827 0.003767 0.002529 0.000317 0.000816 0.037211 0.002877 0.139670 0.105209 0.006510 0.016436 0.070440 0.009989 0.106595 0.017806 0.008401 0.027440 0.011283 0.147238 0.087676 0.150763 0.028535 0.015449 0.002071 0.008399 0.037645 0.003691 0.023559 0.098421 0.008426 0.015750 0.013237 0.015639 0.045058 0.137149 0.066527 0.024937 0.127041 0.087550 0.084591 0.092484 0.029026 0.077814 0.002367 0.009088 0.008927 0.000963 0.002721 0.003284 0.001412 0.003481 0.001487 0.001991 0.003567 0.003784 0.001064 0.002144 0.944627 0.002868 0.002900 0.006167 0.004172 0.003049 0.000414 0.000979 0.075014 0.007085 0.004649 0.007620 0.012293 0.007242 0.004669 0.095151 0.007999 0.079598 0.014034 0.006179 0.005718 0.047353 0.008087 0.013649 0.105165 0.489252 0.002405 0.006840 0.033104 0.003373 0.020520 0.095480 0.065414 0.014016 0.012141 0.071850 0.105532 0.020655 0.009287 0.022702 0.009676 0.029235 0.147157 0.034467 0.276006 0.019168 0.002145 0.008073 0.028714 0.001520 0.781540 0.031662 0.002425 0.007129 0.004865 0.003505 0.006401 0.004725 0.001930 0.048190 0.002677 0.025141 0.004849 0.030237 0.006004 0.004731 0.000909 0.002846 0.074083 0.002689 0.009657 0.062129 0.004436 0.009060 0.004936 0.101022 0.014552 0.012917 0.004498 0.008494 0.526590 0.011137 0.010249 0.112996 0.014353 0.011803 0.001066 0.003335 0.152315 0.061043 0.145651 0.170191 0.005960 0.015886 0.012926 0.009232 0.044712 0.016310 0.007666 0.026820 0.010591 0.148898 0.027356 0.094097 0.026431 0.014370 0.001874 0.007669 0.022107 0.001695 0.021054 0.386334 0.003395 0.009961 0.009216 0.006213 0.118219 0.011437 0.005188 0.016345 0.006931 0.093415 0.167704 0.088267 0.016698 0.009622 0.001307 0.004892 0.149159 0.003413 0.001584 0.002873 0.010607 0.003514 0.001785 0.038410 0.003201 0.561813 0.014276 0.002522 0.002519 0.003230 0.003310 0.006403 0.009277 0.176858 0.001405 0.003844
Time 207.72 secs.
BL MOTIF 9 width=21 seqs=11 D.radiodaurans ( 313) MLAPDGGFYSAQDADTPTEHG 1 A.aeolicus ( 307) MLSPEGAFYSAWDADSEGEEG 1 H.sapiens ( 372) LSHRSGGFYSAEDADSPPERG 1 M.thermoautotrophicum ( 305) LKSPEGGFYSAVDAESGGVEG 1 C.elegans ( 324) ISHKDGGFYAAEDADSLPNHN 1 A.thaliana ( 467) MIAPEGGIFSAEDADSFEFEG 1 B.subtilis ( 309) MTHEDGSFFSALDADTEGEEG 1 D.melanogaster ( 384) LRHPLGGFYAGEDADSLPTHE 1 A.fulgidus ( 304) GCSNEGGFYASQDADIGELDE 1 A.pernix ( 299) WLWTGRGFASSVDADTGEGEG 1 M.tuberculosis ( 309) SKAPADMFTSSLDADADGREG 1 //
log-odds matrix: alength= 20 w= 21 n= 7797 bayes= 9.3658 E= 3.7e-037 -174 -86 -401 -349 -141 -7 -249 139 -267 126 343 -219 -311 -210 -287 30 -101 -23 184 -193 -158 229 -237 -190 -184 -268 -176 116 141 105 -72 -114 -265 -85 35 118 88 -69 -265 -204 147 -169 -313 -318 -320 -254 343 -284 -243 -369 -282 -178 -337 -206 -301 198 -174 -259 208 -277 -185 -258 -226 -25 -352 -289 -208 -265 44 -317 -249 92 352 -100 11 -151 45 -263 -399 -331 -12 -309 185 200 -372 1 -184 -276 -88 -52 -236 -78 -267 -39 -188 44 -145 -266 -405 -310 -240 -287 -90 -369 -459 358 -344 -395 -303 -506 -376 -172 -390 -324 -99 -231 -320 -386 -408 -421 -94 -266 -296 -381 -460 351 -354 -393 -314 -503 33 -186 -387 -331 -340 -56 -303 -375 -415 -428 -368 -183 -460 -473 426 -467 -399 -54 -429 -171 -188 -368 -396 -406 -470 -313 -363 -243 -218 -79 -83 -120 -280 -274 189 -312 6 -145 -223 -200 -141 -177 -273 -197 -243 -163 -16 -176 -91 381 153 -154 -494 -532 -491 -255 -472 -426 -482 -509 -402 -307 -369 -385 -472 344 -150 -324 -526 -519 279 -89 -439 -437 -395 7 -414 -306 -394 -388 -290 -300 -381 -336 -406 174 -180 -197 -437 -446 -170 -149 -201 176 -202 -279 -187 -62 -111 57 -91 -121 -272 211 -184 -148 -104 134 181 -219 -369 -324 387 -149 -436 -385 -293 -363 -379 -463 -387 -42 -457 -313 -409 -313 -347 -383 -438 -400 334 -190 -520 -529 -477 -310 -489 -392 -482 -474 -387 -398 -461 -427 -490 -208 -284 -295 -506 -517 -352 -310 383 -91 -421 -372 -277 -346 -362 -448 -370 -25 -445 -295 -393 -296 -331 -366 -425 -385 -96 -123 -340 -406 -345 -316 -327 -44 -273 -377 -264 -110 -309 -270 -298 339 203 -324 -388 -344 -155 -219 41 99 48 136 -135 -180 -50 34 -161 -42 146 -22 -135 -98 -93 -188 -327 -239 -215 -279 -132 165 -445 201 -249 -354 -181 -417 -330 -83 230 -125 -283 -167 81 -327 -484 -391 -135 -190 -141 167 46 -7 -116 -145 -29 -44 -130 130 -217 -7 44 -81 84 31 -298 -213 -259 -451 74 264 -512 -329 284 -372 -151 -428 -337 -135 -323 -73 35 -229 -233 -346 -535 -427 -248 -294 -239 -21 -463 348 -319 -403 -290 -509 -385 45 -385 -296 -332 -219 -302 -393 -420 -417
letter-probability matrix: alength= 20 w= 21 n= 7797 E= 3.7e-037 0.027511 0.007097 0.003769 0.007106 0.016749 0.067878 0.005080 0.103048 0.008350 0.243585 0.260047 0.006885 0.005449 0.007407 0.008110 0.075773 0.022568 0.050609 0.062966 0.010013 0.030783 0.062938 0.011709 0.021390 0.012395 0.011125 0.008450 0.087408 0.140880 0.210933 0.014597 0.014298 0.007520 0.017584 0.075720 0.139872 0.083535 0.036774 0.002808 0.009280 0.254550 0.003999 0.006948 0.008780 0.004845 0.012273 0.306930 0.005482 0.009836 0.007930 0.003418 0.009171 0.004562 0.007619 0.007359 0.242700 0.013533 0.009864 0.074601 0.005600 0.025524 0.002155 0.012692 0.067020 0.003884 0.009671 0.006742 0.006254 0.072301 0.011362 0.004293 0.059303 0.540827 0.015888 0.063956 0.021585 0.062015 0.009574 0.001107 0.003847 0.084775 0.001518 0.219332 0.319881 0.003375 0.071761 0.007987 0.005808 0.028840 0.070984 0.004686 0.018346 0.007409 0.024303 0.016069 0.083421 0.016567 0.009410 0.001064 0.004464 0.017400 0.001760 0.032526 0.006187 0.001846 0.853371 0.002628 0.002544 0.006511 0.003054 0.001775 0.009523 0.003167 0.003356 0.029813 0.012425 0.004922 0.004087 0.001041 0.002064 0.047878 0.002040 0.007827 0.005705 0.001832 0.814980 0.002447 0.002566 0.006009 0.003119 0.030226 0.008673 0.003220 0.003211 0.005597 0.041753 0.005528 0.004422 0.000996 0.001970 0.007169 0.003628 0.002509 0.003017 0.854259 0.002802 0.001792 0.026939 0.002718 0.031286 0.006556 0.002458 0.003027 0.001905 0.002276 0.007010 0.003647 0.011003 0.003881 0.022117 0.051921 0.005621 0.008702 0.011972 0.164653 0.008214 0.029696 0.014359 0.011319 0.025469 0.009051 0.009178 0.007103 0.008086 0.010984 0.019859 0.040564 0.017492 0.009399 0.536359 0.266738 0.004446 0.001976 0.001993 0.001473 0.012220 0.001081 0.002042 0.001887 0.002997 0.001489 0.003730 0.003650 0.002211 0.002248 0.665949 0.016068 0.006292 0.000461 0.001050 0.637998 0.006957 0.002889 0.003849 0.002869 0.074824 0.001620 0.004706 0.003469 0.006934 0.003227 0.003920 0.003354 0.003098 0.003537 0.205955 0.013018 0.015185 0.000852 0.001740 0.028277 0.004585 0.015109 0.270504 0.010929 0.010335 0.007833 0.025578 0.024651 0.151388 0.012773 0.013534 0.007142 0.136772 0.016554 0.022134 0.021965 0.149865 0.061690 0.008381 0.007132 0.001363 0.888432 0.028371 0.002159 0.004951 0.003743 0.003163 0.003841 0.004111 0.001647 0.023440 0.001990 0.003637 0.003479 0.007044 0.004092 0.004175 0.000844 0.002388 0.934277 0.003453 0.001652 0.002034 0.001627 0.008312 0.000966 0.002595 0.001884 0.003818 0.001642 0.001989 0.001934 0.001647 0.001984 0.014593 0.006327 0.007678 0.000527 0.001062 0.008012 0.001502 0.864263 0.042573 0.002394 0.005421 0.004186 0.003557 0.004316 0.004583 0.001855 0.026467 0.002160 0.004106 0.003872 0.007884 0.004570 0.004695 0.000928 0.002655 0.047238 0.005513 0.005739 0.004795 0.004055 0.008019 0.002966 0.028882 0.008027 0.007454 0.003868 0.014661 0.005543 0.004903 0.007501 0.644916 0.184895 0.006294 0.001200 0.003530 0.031447 0.002819 0.080777 0.158164 0.062062 0.183283 0.011197 0.011229 0.037656 0.129094 0.007871 0.023508 0.130108 0.027228 0.023220 0.031232 0.023850 0.016131 0.001829 0.007295 0.020798 0.001864 0.024367 0.250343 0.002028 0.288826 0.005066 0.003375 0.015118 0.005671 0.002449 0.017715 0.232571 0.013403 0.008309 0.019285 0.079501 0.006149 0.000617 0.002547 0.036045 0.003451 0.022917 0.253607 0.061014 0.068308 0.012791 0.014374 0.043517 0.075037 0.009791 0.077349 0.010494 0.030339 0.080577 0.035154 0.080985 0.073301 0.002241 0.008710 0.015307 0.000567 0.101526 0.498starts: w=8, seq=0, l=865 starts: w=8, seq=5, l=677 starts: w=8, seq=10, l=681 starts: w=11, seq=0, l=865 starts: w=11, seq=5, l=677 starts: w=11, seq=10, l=681 starts: w=15, seq=0, l=865 starts: w=15, seq=5, l=677 starts: w=15, seq=10, l=681 starts: w=21, seq=0, l=865 starts: w=21, seq=5, l=677 starts: w=21, seq=10, l=681 starts: w=29, seq=0, l=865 starts: w=29, seq=5, l=677 starts: w=29, seq=10, l=681 starts: w=41, seq=0, l=865 starts: w=41, seq=5, l=677 starts: w=41, seq=10, l=681 starts: w=50, seq=0, l=865 starts: w=50, seq=5, l=677 starts: w=50, seq=10, l=681 em: w= 8, psites= 2, iter= 0 em: w= 8, psites= 2, iter= 10 em: w= 8, psites= 2, iter= 20 em: w= 8, psites= 2, iter= 30 em: w= 8, psites= 2, iter= 40 em: w= 8, psites= 4, iter= 0 em: w= 8, psites= 4, iter= 10 em: w= 8, psites= 4, iter= 20 em: w= 8, psites= 4, iter= 30 em: w= 8, psites= 4, iter= 40 em: w= 8, psites= 8, iter= 0 em: w= 8, psites= 8, iter= 10 em: w= 8, psites= 8, iter= 20 em: w= 8, psites= 8, iter= 30 em: w= 8, psites= 8, iter= 40 em: w= 8, psites= 12, iter= 0 em: w= 8, psites= 12, iter= 10 em: w= 8, psites= 12, iter= 20 em: w= 8, psites= 12, iter= 30 em: w= 8, psites= 12, iter= 40 em: w= 11, psites= 2, iter= 0 em: w= 11, psites= 2, iter= 10 em: w= 11, psites= 2, iter= 20 em: w= 11, psites= 2, iter= 30 em: w= 11, psites= 2, iter= 40 em: w= 11, psites= 4, iter= 0 em: w= 11, psites= 4, iter= 10 em: w= 11, psites= 4, iter= 20 em: w= 11, psites= 8, iter= 0 em: w= 11, psites= 8, iter= 10 em: w= 11, psites= 8, iter= 20 em: w= 11, psites= 8, iter= 30 em: w= 11, psites= 8, iter= 40 em: w= 11, psites= 12, iter= 0 em: w= 11, psites= 12, iter= 10 em: w= 11, psites= 12, iter= 20 em: w= 11, psites= 12, iter= 30 em: w= 11, psites= 12, iter= 40 em: w= 15, psites= 2, iter= 0 em: w= 15, psites= 4, iter= 0 em: w= 15, psites= 8, iter= 0 em: w= 15, psites= 8, iter= 10 em: w= 15, psites= 8, iter= 20 em: w= 15, psites= 8, iter= 30 em: w= 15, psites= 8, iter= 40 em: w= 15, psites= 12, iter= 0 em: w= 15, psites= 12, iter= 10 em: w= 15, psites= 12, iter= 20 em: w= 15, psites= 12, iter= 30 em: w= 15, psites= 12, iter= 40 em: w= 21, psites= 2, iter= 0 em: w= 21, psites= 4, iter= 0 em: w= 21, psites= 4, iter= 10 em: w= 21, psites= 8, iter= 0 em: w= 21, psites= 12, iter= 0 em: w= 21, psites= 12, iter= 10 em: w= 21, psites= 12, iter= 20 em: w= 21, psites= 12, iter= 30 em: w= 21, psites= 12, iter= 40 em: w= 29, psites= 2, iter= 0 em: w= 29, psites= 4, iter= 0 em: w= 29, psites= 8, iter= 0 em: w= 29, psites= 12, iter= 0 em: w= 41, psites= 2, iter= 0 em: w= 41, psites= 4, iter= 0 em: w= 41, psites= 8, iter= 0 em: w= 41, psites= 12, iter= 0 em: w= 50, psites= 2, iter= 0 em: w= 50, psites= 4, iter= 0 em: w= 50, psites= 8, iter= 0 em: w= 50, psites= 12, iter= 0 512 0.001275 0.007284 0.204865 0.002973 0.018715 0.005244 0.002324 0.012285 0.005033 0.019201 0.075522 0.012574 0.008996 0.005379 0.000431 0.001987 0.016522 0.001687 0.011552 0.068840 0.001795 0.799866 0.003121 0.002406 0.007124 0.002995 0.001674 0.043025 0.003281 0.004097 0.005937 0.013528 0.005584 0.003882 0.000962 0.002122
Time 235.36 secs.
BL MOTIF 10 width=18 seqs=9 A.thaliana ( 282) PPNDNYGRPGFKTLLKKV 1 A.fulgidus ( 124) PPEDRYHLPGFKTVLRKI 1 D.melanogaster ( 198) PPKSRYGMPSFNTVLKSI 1 C.elegans ( 139) PPDDNRGMLGFPTILNMI 1 M.thermoautotrophicum ( 128) PPEDRGGVPGLKTILERV 1 D.radiodaurans ( 138) PPQEGMGMPSFMRVLASI 1 H.sapiens ( 184) PPEDGLTRVGFRTVLLRI 1 A.aeolicus ( 127) PKEGMFGRPGLRDLLLTI 1 B.subtilis ( 129) PKTSKFNRPGFVDVLEHL 1 //
log-odds matrix: alength= 20 w= 18 n= 7833 bayes= 9.89821 E= 1.7e-021 -311 -353 -425 -435 -475 -415 -404 -405 -365 -451 -425 -364 431 -323 -412 -307 -320 -403 -523 -508 -203 -268 -323 -319 -384 -334 -302 -298 111 -348 -315 -253 401 -206 -285 -199 -212 -296 -456 -421 -170 -284 78 217 -344 -247 -155 -252 97 -307 -209 153 -242 162 -155 -118 97 -242 -376 -281 -297 -323 327 26 -443 -2 -213 -384 -218 -459 -380 14 -350 -164 -318 112 -222 -385 -467 -368 -210 -266 -206 -158 -356 115 -143 -249 139 -299 172 240 -280 -22 217 -145 -135 -252 -351 -279 -180 -104 -269 -260 195 -91 13 -117 -208 -81 71 -165 -260 -183 -53 -150 -168 -148 -85 353 -240 -283 -212 -321 -449 342 49 -391 -267 -493 -374 74 -369 -271 -316 -197 -8 -383 -413 -399 -245 -157 -440 -378 -157 -379 -294 -9 -214 48 343 -266 -371 -221 248 -263 -171 98 -291 -254 -186 -247 -317 -313 -349 -325 -297 -232 -243 -83 -273 -251 400 -201 -297 -185 -196 -10 -440 -404 -213 -250 -294 -382 -461 351 -353 -398 -319 -504 -379 -181 -381 -328 -346 63 -286 -370 -420 -430 -377 -194 -475 -486 418 -478 -391 -149 -440 -12 -155 -377 -408 -402 -474 -329 -364 -236 -222 -85 -161 -226 -165 -113 -297 -241 -119 -198 234 -258 161 149 68 -2 154 -102 -93 44 -318 -239 -254 -202 119 -237 -381 -296 -244 -239 -172 -383 -239 -52 -334 -159 30 -41 373 -243 -410 -366 -301 -196 -550 -534 -282 -523 -496 256 -475 92 -151 -424 -486 -439 -506 -428 -241 313 -476 -421 -420 -294 -552 -515 -218 -513 -429 -99 -441 315 -74 -429 -444 -343 -430 -435 -341 -203 -386 -372 10 -215 -125 110 -278 -215 -101 -194 176 48 -150 150 -209 14 73 -73 -68 -192 -306 -219 -151 -224 -151 -101 -294 -231 145 -203 184 -258 160 -39 -226 5 152 141 101 -203 -315 -232 -326 -234 -423 -440 -259 -453 -426 408 -348 -24 -64 -305 -438 -339 -413 -329 -225 146 -393 -323
letter-probability matrix: alength= 20 w= 18 n= 7833 E= 1.7e-021 0.010639 0.001118 0.003190 0.003901 0.001649 0.004014 0.001737 0.002364 0.004233 0.004467 0.001263 0.002525 0.934589 0.003397 0.003412 0.007329 0.004946 0.003623 0.000471 0.001133 0.022619 0.002012 0.006485 0.008752 0.003110 0.007051 0.003512 0.004988 0.114317 0.009162 0.002713 0.005437 0.757579 0.007642 0.008187 0.015545 0.010437 0.007645 0.000748 0.002060 0.028343 0.001805 0.103984 0.359533 0.004096 0.012938 0.009764 0.006859 0.104137 0.012165 0.005658 0.090418 0.008837 0.097520 0.020161 0.027241 0.088668 0.011102 0.001304 0.005467 0.011720 0.001373 0.584717 0.095788 0.002066 0.070356 0.006517 0.002743 0.011722 0.004250 0.001727 0.034611 0.004180 0.010165 0.006543 0.133998 0.009724 0.004125 0.000694 0.002982 0.021461 0.002046 0.014522 0.026776 0.003763 0.158607 0.010626 0.007004 0.139278 0.012875 0.079219 0.165713 0.006792 0.027244 0.266386 0.022516 0.017769 0.010319 0.001548 0.005533 0.026371 0.006269 0.009429 0.013152 0.171887 0.037981 0.031280 0.017478 0.012544 0.058393 0.039471 0.010030 0.007772 0.008967 0.040972 0.021790 0.014183 0.021199 0.009755 0.441076 0.017450 0.001820 0.013988 0.008626 0.001982 0.766162 0.040007 0.002608 0.008334 0.003341 0.001805 0.052552 0.003649 0.004864 0.006629 0.015673 0.042909 0.004180 0.001006 0.002414 0.016894 0.004349 0.002871 0.005795 0.014948 0.005176 0.003712 0.036829 0.012031 0.142030 0.258938 0.004962 0.003594 0.006863 0.331372 0.009911 0.013888 0.116904 0.002341 0.006591 0.025360 0.002326 0.006765 0.009100 0.003949 0.007503 0.003653 0.007840 0.009876 0.057292 0.003631 0.005516 0.754404 0.007866 0.007557 0.017029 0.011672 0.055503 0.000835 0.002324 0.021076 0.002285 0.007934 0.005639 0.001822 0.815772 0.002465 0.002480 0.005820 0.003099 0.001738 0.008971 0.003359 0.003269 0.005390 0.095176 0.006222 0.004581 0.000960 0.001943 0.006768 0.003359 0.002259 0.002749 0.806206 0.002602 0.001893 0.013936 0.002523 0.093791 0.008219 0.002301 0.002797 0.001952 0.002208 0.006307 0.003638 0.011557 0.003773 0.021163 0.030136 0.002703 0.019317 0.036431 0.005656 0.013419 0.012493 0.009958 0.268230 0.017078 0.073619 0.087955 0.075378 0.031265 0.172577 0.030264 0.023808 0.080464 0.001943 0.007304 0.015887 0.003190 0.138634 0.015385 0.003169 0.009203 0.005268 0.007500 0.016120 0.007159 0.004585 0.021940 0.004660 0.010526 0.072661 0.046356 0.602716 0.010977 0.001029 0.003033 0.011465 0.003312 0.001345 0.001967 0.006299 0.001903 0.000920 0.230763 0.001977 0.193002 0.008443 0.001657 0.001622 0.001515 0.001778 0.003178 0.008516 0.517616 0.000652 0.002069 0.005013 0.001678 0.001325 0.002251 0.009800 0.002047 0.001455 0.019744 0.002492 0.904133 0.014382 0.001611 0.002169 0.002957 0.003002 0.003011 0.004269 0.014547 0.001217 0.002897 0.098448 0.002915 0.025436 0.170958 0.006455 0.016077 0.014181 0.010250 0.180407 0.142056 0.008516 0.088539 0.011093 0.035040 0.098115 0.037111 0.028218 0.015676 0.002115 0.008394 0.032329 0.002730 0.021378 0.039703 0.005798 0.014402 0.078179 0.009620 0.190261 0.017071 0.072801 0.023902 0.009857 0.032916 0.169692 0.163860 0.091354 0.014490 0.001989 0.007669 0.009609 0.002546 0.003240 0.003791 0.007379 0.003091 0.001488 0.665314 0.004748 0.086443 0.015401 0.003783 0.002265 0.003028 0.003378 0.006302 0.009534 0.163416 0.001159 0.004086
Time 256.80 secs.
CPU: cfpub02.wi.mit.edu
MOTIFS
For each motif that it discovers in the training set, MEME prints the following information:
Multilevel TTATGTGAACGACGTCACACT consensus AA T A G A GA AA sequence T C TT T
You can convert these blocks to PSSMs (position-specific scoring matrices), LOGOS (color representations of the motifs), phylogeny trees and search them against a database of other blocks by pasting everything from the "BL" line to the "//" line (inclusive) into the Multiple Alignment Processor. If you include the -print_fasta switch on the command line, MEME prints the motif sites in FASTA format instead of BLOCKS format.