id chr start end assigned gene name distance (bp) Dl_Tl10b_DmWG_Max Dl_Tl10b_DmWG_PositionMax Twist_Tl10b_DmWG_Max Twist_Tl10b_DmWG_PositionMax Snail_Tl10b_DmWG_Max Snail_Tl10b_DmWG_PositionMax DTS high confidence TS high confidence DTS + TS high confidence known DV enhancer confirmed DV enhancer putative DV enhancer references sna site: 0% conservation sna site: 20% conservation sna site: 40% conservation sna site: 60% conservation sna site: 80% conservation sna site: 100% conservation twi site: 0% conservation twi site: 20% conservation twi site: 40% conservation twi site: 60% conservation twi site: 80% conservation twi site: 100% conservation dl site: 0% conservation dl site: 20% conservation dl site: 40% conservation dl site: 60% conservation dl site: 80% conservation dl site: 100% conservation 2L_27047_28475 2L 27047 28475 CG31973 CG31973 transcript overlap 1.546218487 27426 2.082483781 27157 3.705329154 27157 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_66885_67090 2L 66885 67090 CG11371 dbr TSS overlap 1.304621849 66995 2.010194625 66995 1.855799373 66995 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_81166_81448 2L 81166 81448 CG11374 CG11374 4864 3.610294118 81269 1.627432808 81269 2.631138976 81269 0 0 0 0 0 0 3 3 3 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 2L_86570_87456 2L 86570 87456 CG11450 net TSS overlap 5.454831933 87356 3.241890639 86936 4.307210031 86936 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_89833_90645 2L 89833 90645 CG11450 net 2451 2.046218487 90222 5.733086191 90222 3.836990596 90222 1 0 1 0 0 0 3 1 0 0 0 0 4 3 1 0 0 0 0 0 0 0 0 0 2L_91177_92017 2L 91177 92017 CG11376 CG11376 2735 1.393907563 91847 3.822057461 91567 6.26645768 91567 0 1 1 0 0 0 0 0 0 0 0 0 3 2 1 1 0 0 1 0 0 0 0 0 2L_109021_109591 2L 109021 109591 CG2674 M(2)21AB transcript overlap 2.253151261 109102 2.34476367 109382 2.525600836 109501 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 1 0 0 0 0 0 0 0 0 2L_115859_116208 2L 115859 116208 CG13694 CG13694 TSS overlap 1.425420168 116108 3.575532901 116108 6.252873563 115969 0 1 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2L_124666_124917 2L 124666 124917 CG3164 CG3164 transcript overlap 1.193277311 124776 1.713623726 124776 2.556948798 124776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_155465_155874 2L 155465 155874 CG11455 CG11455 transcript overlap 2.463235294 155785 2.078776645 155785 2.715778474 155505 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_161628_162179 2L 161628 162179 CG18497 spen transcript overlap 1.878151261 161738 3.030583874 162013 2.322884013 161738 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2L_166390_166891 2L 166390 166891 CG18497 spen transcript overlap 1.825630252 166500 1.93141798 166500 2.121212121 166722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_222926_223727 2L 222926 223727 CG3696 kis transcript overlap 1.428571429 223036 2.645041705 223261 4.181818182 223261 0 0 0 0 0 0 1 1 1 1 1 1 2 2 1 1 1 1 0 0 0 0 0 0 2L_246839_247128 2L 246839 247128 CG3696 kis transcript overlap 2.25210084 247044 2.333642261 246872 2.792058516 246872 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_249789_250361 2L 249789 250361 CG3696 kis transcript overlap 2.328781513 250208 2.299351251 249897 4.206896552 249897 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 2L_265987_266265 2L 265987 266265 CG17075 CG3645 CG17075 CG3645 transcript overlap 0.706932773 266096 1.94068582 266096 2.444096134 266096 0 0 0 0 0 0 1 1 1 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 2L_272827_273371 2L 272827 273371 CG11604 CG11604 transcript overlap 1.323529412 273203 2.622798888 273203 5.234064786 273203 0 1 1 0 0 0 6 2 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2L_277990_278805 2L 277990 278805 CG11561 smo transcript overlap 1.567226891 278641 2.614457831 278082 3.31661442 278082 0 0 0 0 0 0 5 2 2 0 0 0 2 1 1 0 0 0 1 1 1 1 1 0 2L_282329_282869 2L 282329 282869 CG11601 CG11601 transcript overlap 2.976890756 282430 3.937905468 282430 5.239289446 282430 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_321407_321599 2L 321407 321599 CG4574 Plc21C transcript overlap 1.31407563 321447 2.176088971 321447 2.650992685 321447 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_355935_356743 2L 355935 356743 CG11907 Ent1 transcript overlap 1.566176471 356325 3.165894347 356325 4.907001045 356325 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_370631_371191 2L 370631 371191 CG3935 al 6925 1.352941176 370741 1.624652456 370741 2.89968652 370741 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_377655_378257 2L 377655 378257 CG3935 al TSS overlap 1.429621849 377763 3.311399444 378011 5.571577847 378011 0 1 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_441744_442262 2L 441744 442262 CG4114 ex transcript overlap 1.177521008 441854 2.574606117 441854 5.603970742 441854 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_518141_518651 2L 518141 518651 CG2762 ush 4816 2.225840336 518486 2.50231696 518486 3.712643678 518486 0 0 0 0 0 1 "Frank and Rushlow, 1996" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_544084_544361 2L 544084 544361 CG11840 Spp transcript overlap 0.910714286 544191 2.190917516 544191 3.08045977 544191 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_594761_594915 2L 594761 594915 CG2851 Gsc 74 1.823529412 594808 3.244670992 594808 1.401253918 594808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_667576_668136 2L 667576 668136 CG17941 ds transcript overlap 2.081932773 667686 2.670991659 667686 2.224660397 667686 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_713310_713823 2L 713310 713823 CG17941 ds transcript overlap 0.755252101 713411 2.171455051 713411 2.846394984 713411 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_714813_715650 2L 714813 715650 CG17941 ds TSS overlap 1.914915966 714942 3.178869323 715222 5.293625914 715222 0 1 1 0 0 0 3 3 2 2 1 0 2 2 2 2 1 0 0 0 0 0 0 0 2L_825845_826094 2L 825845 826094 CG3727 dock TSS overlap 5.353991597 825877 2.145505097 825877 2.897596656 825877 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_849667_850820 2L 849667 850820 CG3365 drongo transcript overlap 2.018907563 850410 9.229842447 850057 19.5015674 850057 1 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_865689_865897 2L 865689 865897 CG4276 aru transcript overlap 1.777310924 865799 2.030583874 865799 2.686520376 865799 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_867463_868521 2L 867463 868521 CG4276 aru TSS overlap 1.620798319 867975 4.446709917 867975 7.785788924 867975 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2L_901217_901704 2L 901217 901704 CR31656 snRNA:U1:21D TSS overlap 2.389705882 901327 1.788693234 901327 3.304075235 901602 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_914162_914372 2L 914162 914372 CG4226 GluRIIC transcript overlap 3.129201681 914202 2.614457831 914202 2.593521421 914202 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_955175_955425 2L 955175 955425 CG4341 CG4341 transcript overlap 0.864495798 955285 9.383688601 955285 10.57784744 955285 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_1062806_1063327 2L 1062806 1063327 CG4385 S transcript overlap 1.714285714 1063195 3.816496756 1063195 3.755485893 1063195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_1065637_1067268 2L 1065637 1067268 CG4385 S transcript overlap 2.282563025 1066838 6.030583874 1066838 8.57784744 1066838 1 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 2L_1067819_1069122 2L 1067819 1069122 CG4385 S transcript overlap 2.277310924 1068644 5.869323448 1068644 7.773249739 1068644 1 0 1 0 0 0 2 2 2 2 2 0 4 3 3 3 2 0 2 1 0 0 0 0 2L_1075636_1077929 2L 1075636 1077929 CG4385 S TSS overlap 5.153361345 1076585 13.06580167 1076585 15.1400209 1076585 1 0 1 0 0 0 5 0 0 0 0 0 3 0 0 0 0 0 7 1 0 0 0 0 2L_1119214_1120201 2L 1119214 1120201 CG4710 smi21F transcript overlap 3.590336134 1119262 4.03429101 1120039 5.966562173 1120039 1 0 1 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_1404886_1405425 2L 1404886 1405425 CG5481 lea transcript overlap 1.804621849 1405255 1.873030584 1404991 2.673981191 1404991 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 2L_1410429_1411976 2L 1410429 1411976 CG5481 lea transcript overlap 2.864495798 1411089 5.400370714 1411089 7.124346917 1411089 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 2L_1420037_1420593 2L 1420037 1420593 CG5481 lea TSS overlap 12.52731092 1420496 1.796107507 1420496 2.940438871 1420496 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_1421080_1422194 2L 1421080 1422194 CG5481 lea 631 1.412815126 1421728 3.555143652 1421728 5.597701149 1421728 0 1 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_1430418_1430957 2L 1430418 1430957 CR31927 snRNA:U3:22A 1754 1.68907563 1430525 1.793327155 1430525 2.702194357 1430525 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 0 3 1 0 0 0 0 2L_1438795_1439040 2L 1438795 1439040 CR31927 snRNA:U3:22A 6084 1.266806723 1438870 1.917516219 1438870 2.727272727 1438870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_1460429_1461515 2L 1460429 1461515 CG31925 CG31925 12528 4.581932773 1461072 3.739573679 1461072 4.942528736 1461072 0 0 0 0 0 0 5 4 3 2 0 0 2 2 2 1 1 1 2 1 0 0 0 0 2L_1462066_1462861 2L 1462066 1462861 CG31925 CG31925 11182 3.007352941 1462453 4.469879518 1462453 3.320794148 1462453 0 0 0 0 0 0 2 2 2 2 1 1 2 2 2 2 1 1 2 1 1 0 0 0 2L_1474273_1474805 2L 1474273 1474805 CG31925 CG31925 230 2.410714286 1474383 2.886932345 1474383 4.07523511 1474383 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2L_1478584_1479118 2L 1478584 1479118 CG31925 CG31925 4541 1.675420168 1478973 2.082483781 1478973 2.68338558 1478973 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 2L_1485874_1486434 2L 1485874 1486434 CG31928 CG31928 5880 2.017857143 1485984 3.641334569 1485984 5.415882968 1485984 1 0 1 0 0 0 1 1 1 1 0 0 2 2 2 2 0 0 1 0 0 0 0 0 2L_1517638_1518750 2L 1517638 1518750 CG7428 halo TSS overlap 7.673319328 1518307 16.68489342 1518307 23.31452456 1518307 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2L_1597665_1598192 2L 1597665 1598192 CG31935 CG14351 CG31935 CG14351 transcript overlap 0.93697479 1597756 3.16218721 1598022 3.49738767 1598022 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_1709853_1710337 2L 1709853 1710337 CG17660 CG17660 transcript overlap 1.177521008 1710242 2.508804449 1709963 3.62800418 1709963 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_1884803_1885267 2L 1884803 1885267 CG7337 CG7337 TSS overlap 1.761554622 1885101 2.74884152 1885101 3.8892372 1885101 0 0 0 0 0 0 1 1 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_1886313_1886863 2L 1886313 1886863 CG7337 CG7337 transcript overlap 1.68487395 1886694 3.178869323 1886694 5.881922675 1886694 0 1 1 0 0 0 2 2 2 2 1 0 2 2 2 2 1 0 3 0 0 0 0 0 2L_2013847_2014220 2L 2013847 2014220 CR31669 CR31669 597 2.080882353 2013872 2.593141798 2014050 2.998955068 2014050 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2L_2019100_2019464 2L 2019100 2019464 CG4238 CG4238 4579 1.058823529 2019210 1.392956441 2019379 2.262277952 2019210 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_2044948_2045228 2L 2044948 2045228 CG31672 CG31672 297 1.549369748 2045058 3.443929564 2045058 4.593521421 2045058 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2161396_2161688 2L 2161396 2161688 CG3166 aop transcript overlap 2.153361345 2161519 2.057460612 2161417 2.374085684 2161519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2162783_2165538 2L 2162783 2165538 CG3166 aop transcript overlap 3.858193277 2164809 7.511584801 2164809 10.85161964 2164809 1 0 1 0 0 0 3 3 3 2 0 0 5 5 5 5 0 0 1 0 0 0 0 0 2L_2171847_2173170 2L 2171847 2173170 CG3166 aop transcript overlap 1.761554622 2172238 7.355885079 2172742 10.32183908 2172742 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_2178240_2178982 2L 2178240 2178982 CG3166 aop TSS overlap 1.745798319 2178348 3.290083411 2178348 5.538140021 2178348 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2196649_2197467 2L 2196649 2197467 CG10874 CG10874 4277 8.650210084 2197307 3.489341983 2197030 5.177638454 2197030 1 0 1 0 0 0 3 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_2331397_2332233 2L 2331397 2332233 CG9967 CG9967 transcript overlap 1.485294118 2331802 3.282669138 2331802 5.169278997 2331802 0 1 1 0 0 0 4 2 2 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2L_2388485_2389068 2L 2388485 2389068 CG3557 CG3557 2693 1.74789916 2388624 2.482854495 2388624 3.950888192 2388624 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 2L_2447933_2448476 2L 2447933 2448476 CG9885 dpp transcript overlap 1.239495798 2448043 3.929564411 2448043 5.098223615 2448043 0 1 1 0 0 1 "St. Johnston and Gelbart, 1987; Huang et al., 1993" 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2L_2453415_2453904 2L 2453415 2453904 CG9885 dpp transcript overlap 2.119747899 2453517 2.203892493 2453736 3.144200627 2453736 0 0 0 0 0 1 "St. Johnston and Gelbart, 1987; Huang et al., 1993" 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 1 0 2L_2454392_2454768 2L 2454392 2454768 CG9885 dpp transcript overlap 2.06197479 2454710 2.354958295 2454710 3.194357367 2454502 0 0 0 0 0 1 "St. Johnston and Gelbart, 1987; Huang et al., 1993" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2456248_2457530 2L 2456248 2457530 CG9885 dpp transcript overlap 3.12289916 2456609 5.59128823 2456834 8.878787879 2456834 1 0 1 1 0 1 "St. Johnston and Gelbart, 1987; Huang et al., 1993" 2 1 1 1 1 1 1 1 0 0 0 0 2 1 1 1 1 1 2L_2492870_2493004 2L 2492870 2493004 CG9884 oaf TSS overlap 2.538865546 2492907 2.333642261 2492907 3.401253918 2492907 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_2524413_2525235 2L 2524413 2525235 CG3528 CG3528 6376 1.289915966 2524522 3.005560704 2524802 3.458725183 2524802 0 0 0 0 0 0 4 3 3 2 2 1 2 2 2 1 1 1 0 0 0 0 0 0 2L_2539627_2539907 2L 2539627 2539907 CG3515 CG3515 12937 1.094537815 2539737 1.646895273 2539737 2.470219436 2539737 0 0 0 0 0 0 1 1 1 1 0 0 2 1 1 1 1 0 0 0 0 0 0 0 2L_2577414_2578200 2L 2577414 2578200 CG9883 CG9883 TSS overlap 1.596638655 2578031 3.009267841 2577751 3.138975967 2577751 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2580104_2580462 2L 2580104 2580462 CG9881 p16-ARC TSS overlap 2.456932773 2580214 2.385542169 2580371 1.263322884 2580371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2749502_2751407 2L 2749502 2751407 CG3127 Pgk 980 15.68382353 2749612 7.549582947 2750677 10.08986416 2750677 1 0 1 0 0 0 5 1 1 1 1 1 4 2 2 1 1 1 0 0 0 0 0 0 2L_2753147_2753770 2L 2753147 2753770 CG9894 CG9894 transcript overlap 4.471638655 2753625 1.822057461 2753625 2.426332288 2753625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2755358_2755612 2L 2755358 2755612 CG9894 CG9894 transcript overlap 2.074579832 2755443 2.775718258 2755443 3.237199582 2755443 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 2 2 2 0 0 0 0 0 0 2L_2756110_2756408 2L 2756110 2756408 CG9894 CG9894 transcript overlap 4.096638655 2756184 1.356811863 2756184 2.248693835 2756184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_2814693_2815385 2L 2814693 2815385 CG15400 CG15400 transcript overlap 1.18697479 2814779 1.848007414 2815052 2.65308255 2814779 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2873405_2873685 2L 2873405 2873685 CG31694 CG31694 transcript overlap 1.37605042 2873515 1.913809082 2873515 1.617554859 2873515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_2874608_2875049 2L 2874608 2875049 CG8814 CG8814 TSS overlap 1.94012605 2874797 2.539388323 2874797 4.113897597 2874797 0 0 0 0 0 0 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2L_2885004_2885554 2L 2885004 2885554 CG3059 NTPase transcript overlap 1.798319328 2885253 2.094531974 2885253 3.262277952 2885114 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_2889040_2889542 2L 2889040 2889542 CG8817 lilli transcript overlap 1.06407563 2889149 3.042632067 2889373 2.995820272 2889149 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2L_2987477_2988457 2L 2987477 2988457 CG3733 CG18642 Chd1 Bem46 TSS overlap 5.606092437 2987727 2.525486562 2988287 4.935214211 2988287 0 0 0 0 0 0 4 2 2 1 1 0 2 1 1 1 1 0 1 0 0 0 0 0 2L_2999386_3001267 2L 2999386 3001267 CG3558 CG3558 6422 2.37289916 3000324 5.245597776 3000847 7.885057471 3000847 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 5 0 0 0 0 0 2L_3071598_3072957 2L 3071598 3072957 CG9660 toc transcript overlap 3.017857143 3071988 3.742354032 3071988 5.251828631 3071988 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 2L_3078380_3079457 2L 3078380 3079457 CG9660 toc transcript overlap 2.328781513 3078972 4.367933272 3078972 5.538140021 3078972 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_3082667_3084235 2L 3082667 3084235 CG9660 toc transcript overlap 3.492647059 3083310 8.160333642 3083056 9.721003135 3083056 1 0 1 0 0 0 6 5 3 2 1 0 2 1 1 1 0 0 2 2 1 1 1 0 2L_3094396_3095556 2L 3094396 3095556 CG9660 toc transcript overlap 4.62289916 3095091 6.101019462 3095091 7.89446186 3095091 1 0 1 0 0 0 6 4 3 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 2L_3108186_3108460 2L 3108186 3108460 CG9660 toc transcript overlap 2.941176471 3108296 1.816496756 3108296 2.224660397 3108296 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_3158653_3159389 2L 3158653 3159389 CG12399 Mad transcript overlap 4.204831933 3158763 2.329008341 3158997 3.766980146 3158997 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_3172589_3172729 2L 3172589 3172729 CG3485 CG3485 TSS overlap 0.929621849 3172629 1.677479147 3172629 1.922675026 3172629 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_3372742_3372958 2L 3372742 3372958 CG15411 CG15411 89 1.105042017 3372860 1.822984245 3372860 2.398119122 3372860 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3442571_3442850 2L 3442571 3442850 CG2772 CG2772 3147 1.107142857 3442680 3.011121409 3442680 4.429467085 3442680 0 0 0 0 0 0 3 2 1 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 2L_3465449_3466079 2L 3465449 3466079 CG3241 msl-2 transcript overlap 2.039915966 3465559 1.900834106 3465559 2.277951933 3465839 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 2 1 1 0 0 2L_3532870_3533923 2L 3532870 3533923 CG8853 CG8853 1967 1.62605042 3533532 4.766450417 3533532 6.326018809 3533532 0 1 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 3 0 0 0 0 0 2L_3539087_3539199 2L 3539087 3539199 CG10016 drm 52 1.101890756 3539113 1.376274328 3539113 1.12539185 3539113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3539319_3539524 2L 3539319 3539524 CG10016 drm transcript overlap 1.504201681 3539354 1.626506024 3539354 1.089864159 3539354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3549194_3549978 2L 3549194 3549978 CG10016 drm 9943 1.754201681 3549808 3.816496756 3549528 4.567398119 3549528 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2L_3602601_3603124 2L 3602601 3603124 CG3851 odd 3624 1.24789916 3602991 4.12326228 3602991 6.108672936 3602991 0 1 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_3606233_3607070 2L 3606233 3607070 CG3851 odd TSS overlap 2.652310924 3606730 2.963855422 3606730 3.379310345 3606730 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_3608131_3609727 2L 3608131 3609727 CG3851 odd 1383 2.255252101 3609067 5.907321594 3609067 7.359456635 3609067 1 0 1 0 0 0 2 1 1 1 0 0 4 4 3 2 2 0 1 0 0 0 0 0 2L_3610003_3610273 2L 3610003 3610273 CG3851 odd 3255 0.431722689 3610112 2.537534754 3610112 0.779519331 3610112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3614101_3615695 2L 3614101 3615695 CG2788 Dot 3597 1.459033613 3614755 3.530120482 3614755 5.861024033 3614755 0 1 1 0 0 0 1 1 0 0 0 0 2 2 1 1 1 0 2 1 0 0 0 0 2L_3618991_3619319 2L 3618991 3619319 CG2788 Dot TSS overlap 1.136554622 3619219 1.807228916 3619219 2.267502612 3619079 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3631694_3633271 2L 3631694 3633271 CG10033 for transcript overlap 1.795168067 3632065 4.728452271 3632345 6.376175549 3632345 0 1 1 0 0 0 2 2 1 1 1 0 2 1 1 1 0 0 3 1 0 0 0 0 2L_3633940_3634137 2L 3633940 3634137 CG10033 for transcript overlap 1.480042017 3633968 1.720111214 3633968 2.197492163 3633968 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_3667418_3667695 2L 3667418 3667695 CG10033 for 10467 1.704831933 3667528 2.980537535 3667528 3.415882968 3667528 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_3681470_3682119 2L 3681470 3682119 CG2808 CG2808 transcript overlap 1.335084034 3681711 2.516218721 3681711 3.490073145 3681711 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 2 1 1 1 1 1 0 0 0 2L_3769965_3772111 2L 3769965 3772111 CG10021 bowl TSS overlap 2.649159664 3771765 5.075069509 3771765 9.297805643 3771765 1 0 1 0 0 0 2 2 2 2 2 2 1 0 0 0 0 0 7 2 0 0 0 0 2L_3775560_3776115 2L 3775560 3776115 CG10021 bowl transcript overlap 1.469537815 3775950 2.090824838 3775950 2.986415883 3775670 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_3803775_3803982 2L 3803775 3803982 CG3920 l(2)k16918 transcript overlap 2.385504202 3803815 1.848007414 3803815 2.223615465 3803815 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_3817765_3818822 2L 3817765 3818822 CG3407 CG3407 4358 1.44012605 3818155 4.370713624 3818431 5.496342738 3818431 0 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3821283_3823191 2L 3821283 3823191 CG16738 slp1 2489 1.169117647 3822750 4.080630213 3821367 5.549634274 3822750 0 1 1 0 0 0 1 0 0 0 0 0 4 2 0 0 0 0 1 0 0 0 0 0 2L_3823991_3824504 2L 3823991 3824504 CG16738 slp1 1176 1.039915966 3824101 2.606116775 3824101 2.240334378 3824101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_3828069_3828334 2L 3828069 3828334 CG16738 slp1 2389 1.071428571 3828165 2.165894347 3828165 3.103448276 3828165 0 0 0 0 0 0 2 2 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 2L_3833582_3834671 2L 3833582 3834671 CG2939 slp2 2171 1.399159664 3834252 3.102873031 3833972 5.655172414 3833972 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_3860518_3861510 2L 3860518 3861510 CG3964 CG3964 1171 1.578781513 3860898 2.60055607 3861126 4.337513062 3861126 0 0 0 0 0 0 3 2 1 0 0 0 3 2 2 0 0 0 3 0 0 0 0 0 2L_3862845_3863671 2L 3862845 3863671 CG3964 CG3964 transcript overlap 1.639705882 3863215 2.850787766 3863215 3.47753396 3863215 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_4023606_4024117 2L 4023606 4024117 CG12676 ed 7262 1.779411765 4023716 2.387395737 4023716 3.401253918 4023716 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4031335_4032204 2L 4031335 4032204 CG12676 ed TSS overlap 2.301470588 4031387 5.329935125 4031758 8.873563218 4031758 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4034385_4035154 2L 4034385 4035154 CG12676 ed transcript overlap 3.68697479 4034494 4.1918443 4034494 8.661442006 4034494 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2L_4050556_4051115 2L 4050556 4051115 CG12676 ed transcript overlap 1.580882353 4050666 3.352177943 4050945 4.710553814 4050945 0 0 0 0 0 0 3 3 2 2 2 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_4053536_4054095 2L 4053536 4054095 CG12676 ed transcript overlap 2.114495798 4053925 1.974050046 4053925 2.454545455 4053925 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2L_4055627_4055879 2L 4055627 4055879 CG12676 ed transcript overlap 1.480042017 4055709 1.802594995 4055709 2.094043887 4055709 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_4132220_4132755 2L 4132220 4132755 CG4099 Sr-CI 10499 1.199579832 4132608 2.400370714 4132330 2.586206897 4132330 0 0 0 0 0 0 0 0 0 0 0 0 3 2 2 1 0 0 0 0 0 0 0 0 2L_4169961_4170240 2L 4169961 4170240 CG11767 Or24a 3860 1.529411765 4170071 1.816496756 4170071 2.23092999 4170071 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_4221264_4222279 2L 4221264 4222279 CG3352 ft 3412 1.340336134 4221908 4.875810936 4221908 6.760710554 4221908 0 1 1 0 0 0 1 1 1 0 0 0 4 1 1 0 0 0 0 0 0 0 0 0 2L_4280814_4283291 2L 4280814 4283291 CG15427 tutl TSS overlap 1.642857143 4281964 5.835959222 4282796 9.065830721 4282796 0 1 1 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 2L_4283464_4283721 2L 4283464 4283721 CG15427 tutl transcript overlap 0.996848739 4283551 1.263206673 4283551 1.037617555 4283551 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 2L_4286981_4287805 2L 4286981 4287805 CG15427 tutl transcript overlap 2.487394958 4287356 7.304911956 4287356 9.835945664 4287356 1 0 1 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_4351192_4352028 2L 4351192 4352028 CG15429 CG15429 947 1.489495798 4351302 3.618164968 4351302 3.782654127 4351302 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_4363645_4364428 2L 4363645 4364428 CG3048 Traf1 7562 1.512605042 4364033 4.254865616 4364033 5.494252874 4364033 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_4366567_4367123 2L 4366567 4367123 CG3048 Traf1 4867 2.774159664 4366677 7.96107507 4366677 10.68025078 4366677 1 0 1 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4367676_4369303 2L 4367676 4369303 CG3048 Traf1 2687 1.635504202 4368864 3.16218721 4368864 4.5276907 4368864 0 0 0 0 0 0 3 2 2 2 2 0 3 2 1 1 1 0 2 1 0 0 0 0 2L_4369794_4371149 2L 4369794 4371149 CG3048 Traf1 841 2.355042017 4370175 6.088044486 4370175 3.709508882 4370175 1 0 1 0 0 0 1 1 1 0 0 0 5 5 3 0 0 0 0 0 0 0 0 0 2L_4371850_4372201 2L 4371850 4372201 CG3048 Traf1 TSS overlap 2.614495798 4372031 1.624652456 4371889 2.632183908 4372031 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_4375155_4375398 2L 4375155 4375398 CG3048 Traf1 transcript overlap 2.613445378 4375228 1.892493049 4375228 2.621734587 4375228 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_4378054_4379933 2L 4378054 4379933 CG3048 Traf1 transcript overlap 4.31512605 4379763 5.256719184 4378719 7.771159875 4378719 1 0 1 0 0 0 2 2 2 1 1 0 3 3 2 2 2 0 1 0 0 0 0 0 2L_4386904_4387245 2L 4386904 4387245 CG18013 CG18013 TSS overlap 1.692226891 4387078 2.153846154 4386942 2.202716823 4386942 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_4444449_4445227 2L 4444449 4445227 CG15437 CG15433 morgue CG15433 TSS overlap 1.602941176 4444559 2.391102873 4444669 3.467084639 4444779 0 0 0 0 0 0 4 2 2 1 0 0 3 2 1 1 1 0 0 0 0 0 0 0 2L_4489778_4490258 2L 4489778 4490258 CG33196 dp transcript overlap 1.463235294 4490114 1.976830399 4489878 2.728317659 4489878 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_4494605_4495392 2L 4494605 4495392 CG33196 dp transcript overlap 1.381302521 4495222 4.647822057 4495222 5.536050157 4495222 0 1 1 0 0 0 2 1 1 1 0 0 3 3 2 0 0 0 0 0 0 0 0 0 2L_4498356_4498603 2L 4498356 4498603 CG33196 dp transcript overlap 1.351890756 4498463 2.089898054 4498463 2.623824451 4498463 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2L_4505281_4506170 2L 4505281 4506170 CG33196 dp transcript overlap 0.951680672 4506000 1.759036145 4505720 2.747126437 4506000 0 0 0 0 0 0 3 2 0 0 0 0 4 3 3 1 0 0 1 0 0 0 0 0 2L_4519185_4519935 2L 4519185 4519935 CG33196 dp transcript overlap 1.260504202 4519549 4.69416126 4519549 6.871473354 4519549 0 1 1 0 0 0 3 1 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 2L_4534635_4537351 2L 4534635 4537351 CG33196 dp transcript overlap 1.084033613 4535524 1.84244671 4535524 2.360501567 4535017 0 0 0 0 0 0 8 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 2L_4537981_4540750 2L 4537981 4540750 CG33196 dp transcript overlap 1.045168067 4539504 1.823911029 4538070 2.350052247 4539784 0 0 0 0 0 0 10 0 0 0 0 0 18 2 0 0 0 0 0 0 0 0 0 0 2L_4541308_4542685 2L 4541308 4542685 CG33196 dp transcript overlap 1.094537815 4541418 1.799814643 4541418 2.347962382 4541418 0 0 0 0 0 0 5 0 0 0 0 0 10 1 0 0 0 0 0 0 0 0 0 0 2L_4544053_4544834 2L 4544053 4544834 CG33196 dp transcript overlap 1.012605042 4544163 1.717330862 4544443 2.250783699 4544664 0 0 0 0 0 0 3 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 2L_4545114_4545954 2L 4545114 4545954 CG33196 dp transcript overlap 0.996848739 4545784 1.740500463 4545784 2.222570533 4545784 0 0 0 0 0 0 3 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 2L_4553871_4554389 2L 4553871 4554389 CG33196 dp transcript overlap 1.203781513 4553979 2.760889713 4554219 3.386624869 4553979 0 0 0 0 0 0 2 2 2 1 1 0 1 1 1 1 0 0 1 1 0 0 0 0 2L_4557887_4558985 2L 4557887 4558985 CG33196 dp transcript overlap 1.278361345 4558815 4.897126969 4558255 6.249738767 4558255 0 1 1 0 0 0 4 1 0 0 0 0 3 2 1 1 0 0 1 1 1 1 0 0 2L_4597707_4597980 2L 4597707 4597980 CG33196 dp 5744 1.010504202 4597810 2.505097312 4597810 3.603970742 4597810 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4742205_4742454 2L 4742205 4742454 CG15630 CG15630 transcript overlap 0.944327731 4742284 2.303985171 4742284 2.063740857 4742284 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4810277_4810556 2L 4810277 4810556 CG15629 CG15629 2469 1.550420168 4810387 2.584800741 4810387 3.173458725 4810387 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_4823627_4824413 2L 4823627 4824413 CG15628 CG15628 transcript overlap 3.911764706 4824000 8.431881372 4824000 11.77324974 4824000 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 2L_4865413_4865620 2L 4865413 4865620 CG31660 CG31660 transcript overlap 1.181722689 4865509 4.139017609 4865509 4.933124347 4865509 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_4889447_4889936 2L 4889447 4889936 CG15625 CG15625 59 1.601890756 4889557 3.061167748 4889557 3.251828631 4889557 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_4892167_4892505 2L 4892167 4892505 CG3036 CG3036 transcript overlap 2.822478992 4892335 1.670064875 4892203 2.333333333 4892203 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_4893602_4893862 2L 4893602 4893862 CG3036 CG3036 transcript overlap 1.631302521 4893698 1.249304912 4893698 1.374085684 4893698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4894111_4894360 2L 4894111 4894360 CG3036 CG3036 transcript overlap 2.210084034 4894197 1.21686747 4894197 1.672936259 4894197 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_4896986_4897266 2L 4896986 4897266 CG3036 CG3036 transcript overlap 2.921218487 4897096 1.925857275 4897096 3.340647858 4897096 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_4901201_4902860 2L 4901201 4902860 CG3036 CG3036 transcript overlap 3.474789916 4902690 1.647822057 4902410 2.923719958 4902410 0 0 0 0 0 0 2 2 1 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_4904177_4904719 2L 4904177 4904719 CG2837 CG2837 transcript overlap 11.78361345 4904564 1.403151066 4904564 2.902821317 4904564 0 0 0 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_4955438_4955917 2L 4955438 4955917 CG3753 Marcal1 TSS overlap 1.87394958 4955469 2.339202966 4955609 3.632183908 4955609 0 0 0 0 0 0 3 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_4981601_4982190 2L 4981601 4982190 CG8892 CG8892 13 1.647058824 4981627 1.909175162 4982020 2.78369906 4982020 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_5000138_5001003 2L 5000138 5001003 CG33113 Rtnl1 transcript overlap 2.44012605 5000561 2.923076923 5000833 3.73354232 5000833 0 0 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 2 0 0 0 0 0 2L_5113815_5114081 2L 5113815 5114081 CG33715 Msp-300 3496 0.867647059 5113913 1.589434662 5113913 2.165099269 5113913 0 0 0 0 0 0 2 1 0 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 2L_5202505_5202984 2L 5202505 5202984 CG33715 Msp-300 transcript overlap 1.169117647 5202814 2.737720111 5202814 3.464994775 5202814 0 0 0 0 0 0 1 1 1 1 1 1 2 1 1 1 0 0 1 0 0 0 0 0 2L_5225745_5226023 2L 5225745 5226023 CG14026 tkv transcript overlap 1.984243697 5225853 1.784059314 5225853 2.374085684 5225853 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2L_5238302_5238891 2L 5238302 5238891 CG14026 tkv transcript overlap 1.039915966 5238721 2.2557924 5238721 2.787878788 5238721 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5239532_5240570 2L 5239532 5240570 CG14026 tkv transcript overlap 1.852941176 5239922 5.717330862 5239922 4.648902821 5239922 0 1 1 0 0 0 1 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2L_5242674_5243140 2L 5242674 5243140 CG14026 tkv transcript overlap 2.283613445 5242724 1.733086191 5242724 3.176593521 5242724 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_5277070_5277622 2L 5277070 5277622 CG14025 Bsg25D transcript overlap 1.330882353 5277180 1.741427247 5277452 2.811912226 5277452 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5325399_5325656 2L 5325399 5325656 CG14023 CG14023 472 1.635504202 5325486 1.934198332 5325486 2.389759666 5325486 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5355278_5356044 2L 5355278 5356044 CG11020 nompC transcript overlap 0.959033613 5355876 2.815569972 5355596 3.932079415 5355596 0 0 0 0 0 0 2 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 2L_5366758_5367343 2L 5366758 5367343 CG11020 nompC 20521 1.141806723 5366877 3.137164041 5367092 2.60292581 5367092 0 0 0 0 0 0 2 2 2 2 2 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_5381115_5382196 2L 5381115 5382196 CG6604 H15 22146 2.454831933 5381486 3.436515292 5381486 4.787878788 5381486 0 0 0 0 0 0 2 2 2 2 2 0 3 3 2 2 2 0 1 0 0 0 0 0 2L_5400514_5401340 2L 5400514 5401340 CG6604 H15 3002 2.053571429 5401172 2.545875811 5400895 2.910135841 5400615 0 0 0 0 0 0 2 2 2 2 1 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_5403619_5403896 2L 5403619 5403896 CG6604 H15 446 3.308823529 5403726 2.545875811 5403726 1.79414838 5403726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5410156_5410951 2L 5410156 5410951 CG6604 H15 transcript overlap 1.818277311 5410528 5.100092678 5410528 7.220480669 5410528 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_5422952_5423488 2L 5422952 5423488 CG6604 H15 18610 1.832983193 5423058 1.506024096 5423058 2.587251829 5423058 0 0 0 0 0 0 3 3 3 3 3 2 3 3 3 3 2 0 1 1 0 0 0 0 2L_5455385_5455655 2L 5455385 5455655 CG6634 mid 5986 0.973739496 5455486 1.346617238 5455486 1.991640543 5455486 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_5456774_5457051 2L 5456774 5457051 CG6634 mid 4590 0.842436975 5456884 1.691380908 5456884 2.271682341 5456884 0 0 0 0 0 0 2 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_5461171_5461365 2L 5461171 5461365 CG6634 mid 276 7.06407563 5461198 2.002780352 5461198 2.267502612 5461198 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5473838_5474671 2L 5473838 5474671 CG6634 mid 12197 1.360294118 5474228 3.291010195 5474228 5.16091954 5474228 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5517370_5517997 2L 5517370 5517997 CG14020 CG14020 TSS overlap 1.43907563 5517757 2.844300278 5517757 4.085684431 5517757 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_5550698_5551261 2L 5550698 5551261 CG14014 CG14014 TSS overlap 1.741596639 5550804 3.048192771 5550804 4.596656217 5550804 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_5564131_5564379 2L 5564131 5564379 CR32998 snRNA:U4:25F 1240 1.549369748 5564219 3.633920297 5564219 5.106583072 5564219 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_5658435_5658760 2L 5658435 5658760 CG31646 CG31646 TSS overlap 2.554621849 5658606 3.488415199 5658606 5.770114943 5658606 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5730679_5731229 2L 5730679 5731229 CG11030 CG11030 transcript overlap 1.347689076 5731059 2.980537535 5730789 3.297805643 5730789 0 0 0 0 0 0 3 1 1 1 1 0 3 2 1 1 1 0 0 0 0 0 0 0 2L_5780700_5781280 2L 5780700 5781280 CG9171 CG9171 transcript overlap 1.75105042 5780810 3.656163114 5780810 1.967607106 5780810 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_5789144_5789950 2L 5789144 5789950 CG9171 CG9171 transcript overlap 2.93802521 5789506 4.693234476 5789506 6.684430512 5789506 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2L_5799721_5800140 2L 5799721 5800140 CG9171 CG9171 transcript overlap 1.853991597 5800040 2.147358665 5800040 2.102403344 5799835 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_5801581_5801904 2L 5801581 5801904 CG14005 CG14005 transcript overlap 1.621848739 5801664 2.494902688 5801664 3.067920585 5801804 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5805186_5805495 2L 5805186 5805495 CG11034 CG11034 TSS overlap 1.891806723 5805268 5.122335496 5805268 7.593521421 5805268 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_5852633_5853160 2L 5852633 5853160 CG31645 CG31645 transcript overlap 1.204831933 5852723 3.110287303 5853000 4.796238245 5853000 0 0 0 0 0 0 3 2 1 1 1 0 3 1 1 1 1 1 0 0 0 0 0 0 2L_5870267_5871594 2L 5870267 5871594 CG8965 CG8965 transcript overlap 3.621848739 5871202 16.23169601 5871202 19.77429467 5871202 1 0 1 0 0 0 1 1 1 1 0 0 2 2 2 2 2 1 2 1 0 0 0 0 2L_5877499_5878057 2L 5877499 5878057 CG8965 CG8965 transcript overlap 1.412815126 5877887 2.208526413 5877609 4.314524556 5877887 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5879138_5879696 2L 5879138 5879696 CG8965 CG8965 TSS overlap 1.62710084 5879526 2.089898054 5879387 3.555903866 5879248 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_5890657_5890913 2L 5890657 5890913 CG9024 Acp26Ab 1949 1.733193277 5890766 1.529193698 5890766 2.102403344 5890766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5902860_5903111 2L 5902860 5903111 CG9021 CG9021 1563 1.382352941 5902965 2.367006487 5902965 1.71368861 5902965 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_5907362_5907901 2L 5907362 5907901 CG14001 bchs transcript overlap 2.075630252 5907731 4.746061168 5907470 6.586206897 5907470 1 0 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2L_5968941_5969454 2L 5968941 5969454 CG9064 Ucp4C transcript overlap 1.824579832 5969051 2.500463392 5969051 3.616509927 5969284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2L_5978289_5978569 2L 5978289 5978569 CG9553 chic transcript overlap 1.819327731 5978399 2.136237257 5978399 1.681295716 5978399 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5980558_5980763 2L 5980558 5980763 CG9553 chic transcript overlap 1.960084034 5980598 2.297497683 5980598 1.804597701 5980598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_5981597_5981902 2L 5981597 5981902 CG9075 eIF-4a TSS overlap 1.75210084 5981707 2.169601483 5981817 1.15569488 5981817 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 2L_5983467_5983725 2L 5983467 5983725 CG9075 eIF-4a transcript overlap 0.74789916 5983577 1.96570899 5983577 2.26123302 5983577 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_5996899_5997634 2L 5996899 5997634 CG9088 lid transcript overlap 1.608193277 5997190 2.557924004 5997190 5.263322884 5997190 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2L_6019641_6019903 2L 6019641 6019903 CG11607 H2.0 243 1.56512605 6019733 2.678405931 6019733 1.448275862 6019733 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_6037794_6038121 2L 6037794 6038121 CG9117 CG9117 TSS overlap 1.209033613 6037816 1.959221501 6037920 2.213166144 6037920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6071366_6072155 2L 6071366 6072155 CG9159 Kr-h2 transcript overlap 1.43907563 6071476 7.843373494 6071705 12.65621735 6071705 0 1 1 0 0 0 3 2 2 2 2 2 3 2 2 2 2 2 1 0 0 0 0 0 2L_6078751_6079799 2L 6078751 6079799 CG9162 CG9162 298 2.675420168 6078878 6.40871177 6078878 9.426332288 6078878 1 0 1 0 0 0 3 2 0 0 0 0 5 1 1 0 0 0 2 1 0 0 0 0 2L_6088389_6088876 2L 6088389 6088876 CG18783 Kr-h1 transcript overlap 4.551470588 6088499 4.504170528 6088499 5.827586207 6088499 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 2L_6093972_6094170 2L 6093972 6094170 CG18783 Kr-h1 transcript overlap 0.989495798 6094083 2.792400371 6094083 3.298850575 6094083 0 0 0 0 0 0 2 2 2 1 0 0 2 2 2 2 2 1 0 0 0 0 0 0 2L_6152155_6152485 2L 6152155 6152485 CG13990 CG13990 transcript overlap 1.121848739 6152265 1.158480074 6152265 2.207941484 6152265 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6152814_6153332 2L 6152814 6153332 CG13990 CG13990 transcript overlap 0.671218487 6153034 5.77849861 6153034 9.503657262 6153034 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6204669_6205213 2L 6204669 6205213 CG31640 CG31640 transcript overlap 2.167016807 6204779 2.88137164 6204779 2.44200627 6204779 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6228954_6230011 2L 6228954 6230011 CG9481 Ugt37b1 3904 1.444327731 6229591 2.810009268 6229591 3.460815047 6229344 0 0 0 0 0 0 3 0 0 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 2L_6241945_6242523 2L 6241945 6242523 CG9486 CG9486 13353 1.629201681 6242362 3.092678406 6242362 3.001044932 6242362 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6259692_6259968 2L 6259692 6259968 CG9486 CG9486 3816 0.907563025 6259795 1.614457831 6259795 2.473354232 6259795 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_6338708_6339604 2L 6338708 6339604 CG11567 Cpr TSS overlap 1.410714286 6339159 2.308619092 6339439 4.10553814 6339159 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6373022_6374641 2L 6373022 6374641 CG9506 slam transcript overlap 2.330882353 6374471 2.628359592 6374471 5.21630094 6374471 1 0 1 0 0 0 5 2 1 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 2L_6375171_6375728 2L 6375171 6375728 CG9506 slam transcript overlap 3.030462185 6375561 1.727525487 6375561 3.262277952 6375561 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6376546_6376800 2L 6376546 6376800 CG9506 slam transcript overlap 2.329831933 6376656 1.066728452 6376656 2.542319749 6376656 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6390447_6390737 2L 6390447 6390737 CG9508 CG9508 transcript overlap 2.358193277 6390568 2.326227989 6390568 2.693834901 6390568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6411217_6411497 2L 6411217 6411497 CG13982 CG13982 1207 2 6411327 1.814643188 6411327 2.810867294 6411327 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2L_6417282_6417559 2L 6417282 6417559 CG11527 Tig transcript overlap 1.298319328 6417391 1.935125116 6417391 3.349007315 6417391 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 2L_6459663_6460209 2L 6459663 6460209 CG16947 CG16947 transcript overlap 1.359243697 6460040 2.240037071 6459770 3.345872518 6459770 0 0 0 0 0 0 3 3 2 2 2 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_6479529_6479803 2L 6479529 6479803 CG9539 Sec61alpha transcript overlap 1.267857143 6479633 1.976830399 6479633 3.02507837 6479633 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_6531034_6531587 2L 6531034 6531587 CG9554 eya transcript overlap 1.461134454 6531142 3.265987025 6531142 2.801462905 6531142 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_6532143_6532629 2L 6532143 6532629 CG9554 eya transcript overlap 1.113445378 6532253 3.147358665 6532253 2.349007315 6532253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6561508_6562004 2L 6561508 6562004 CG9596 CG9596 TSS overlap 1.118697479 6561630 2.297497683 6561846 3.456635319 6561846 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6646108_6646877 2L 6646108 6646877 CG31635 CG31635 transcript overlap 1.387605042 6646479 4.662650602 6646479 7.868338558 6646479 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_6647429_6647698 2L 6647429 6647698 CG31635 CG31635 transcript overlap 1.278361345 6647532 2.197405005 6647532 2.184952978 6647532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2L_6675607_6676157 2L 6675607 6676157 CG11330 cort transcript overlap 1.990546218 6675987 2.643188137 6675987 2.273772205 6675987 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6683291_6683801 2L 6683291 6683801 CG11328 Nhe3 transcript overlap 1.232142857 6683646 1.796107507 6683646 2.728317659 6683646 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2L_6684369_6684989 2L 6684369 6684989 CG11328 Nhe3 12 4.072478992 6684595 3.724745134 6684595 4.876698015 6684595 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_6716160_6716510 2L 6716160 6716510 CG11325 GRHR TSS overlap 2.106092437 6716200 1.693234476 6716200 3.414838036 6716200 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_6722672_6723327 2L 6722672 6723327 CG11324 homer transcript overlap 2.272058824 6722782 4.690454124 6722782 7.742946708 6722782 1 0 1 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2L_6734389_6735221 2L 6734389 6735221 CG11201 CG11201 transcript overlap 1.256302521 6734779 7.860055607 6734779 14.18913271 6734779 0 1 1 0 0 0 3 3 2 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_6737551_6738307 2L 6737551 6738307 CG11323 CG11323 transcript overlap 1.146008403 6737661 3.253012048 6737661 4.084639498 6737661 0 0 0 0 0 0 4 3 3 2 2 0 3 3 3 3 2 0 0 0 0 0 0 0 2L_6788279_6788529 2L 6788279 6788529 CG9258 nrv1 1430 0.950630252 6788359 4.738646895 6788359 6.654127482 6788359 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_6801928_6802651 2L 6801928 6802651 CG17377 CG17377 transcript overlap 1.276260504 6802039 2.210379981 6802271 3.082549634 6802039 0 0 0 0 0 0 3 1 1 0 0 0 5 1 1 1 0 0 0 0 0 0 0 0 2L_6829868_6830753 2L 6829868 6830753 CG31632 CG31632 transcript overlap 1.514705882 6830587 2.784059314 6830258 2.432601881 6830258 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_6843303_6843552 2L 6843303 6843552 CG10800 Rca1 8772 1.013655462 6843409 2.154772938 6843409 3.058516196 6843409 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 2L_6921471_6922588 2L 6921471 6922588 CG10377 Hrb27C transcript overlap 2.154411765 6921917 3.545875811 6921917 3.114942529 6921917 0 0 0 0 0 0 1 1 0 0 0 0 5 5 3 1 0 0 0 0 0 0 0 0 2L_6939561_6939982 2L 6939561 6939982 CG18304 CG18304 transcript overlap 5.171218487 6939893 2.327154773 6939893 4.531870428 6939893 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7009420_7011364 2L 7009420 7011364 CG13776 CG13776 2132 3.369747899 7010639 6.912882298 7010639 7.247648903 7010639 1 0 1 0 0 0 2 1 1 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 2L_7042947_7043721 2L 7042947 7043721 CG13777 CG31630 milt CG31630 transcript overlap 2.06092437 7043057 2.329935125 7043337 3.284221526 7043337 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 2L_7056034_7057966 2L 7056034 7057966 CG13778 Mnn1 TSS overlap 4.966386555 7056265 3.020389249 7056381 5.335423197 7056661 1 0 1 0 0 0 8 3 1 1 0 0 4 1 1 1 0 0 0 0 0 0 0 0 2L_7094765_7095248 2L 7094765 7095248 CG13780 Pvf2 10131 1.118697479 7095081 1.708989805 7095081 3.523510972 7095081 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_7100201_7100471 2L 7100201 7100471 CG31629 Pvf3 transcript overlap 1.236344538 7100301 1.564411492 7100301 2.166144201 7100301 0 0 0 0 0 0 3 3 2 1 0 0 2 2 2 0 0 0 0 0 0 0 0 0 2L_7103080_7103886 2L 7103080 7103886 CG31629 Pvf3 transcript overlap 1.06302521 7103190 3.775718258 7103190 4.711598746 7103470 0 0 0 0 0 0 2 2 2 1 0 0 3 2 2 0 0 0 0 0 0 0 0 0 2L_7143715_7143993 2L 7143715 7143993 CG31629 Pvf3 10032 1.160714286 7143823 2.758109361 7143823 2.692789969 7143823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7148249_7148807 2L 7148249 7148807 CG13783 CG13783 7890 2.128151261 7148357 2.615384615 7148357 3.167189133 7148357 0 0 0 0 0 0 1 0 0 0 0 0 3 2 2 1 0 0 0 0 0 0 0 0 2L_7212295_7212826 2L 7212295 7212826 CG13784 CG13784 transcript overlap 1.975840336 7212593 2.373493976 7212593 3.237199582 7212593 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_7245236_7245998 2L 7245236 7245998 CG4675 Ndae1 4736 1.87289916 7245346 1.724745134 7245560 2.226750261 7245346 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_7247356_7248151 2L 7247356 7248151 CG13786 CG13786 4621 1.731092437 7247711 3.037071362 7247711 4.501567398 7247711 0 0 0 0 0 0 2 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 2L_7258134_7258417 2L 7258134 7258417 CG4698 Wnt4 transcript overlap 1.348739496 7258200 2.314179796 7258288 3.132706374 7258200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7277364_7277543 2L 7277364 7277543 CG4698 Wnt4 196 1.978991597 7277375 1.702502317 7277375 2.283176594 7277375 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_7289871_7290653 2L 7289871 7290653 CG13785 CG13785 7338 4.551470588 7290217 3.860055607 7289977 5.871473354 7289977 1 0 1 0 0 0 3 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_7295260_7296932 2L 7295260 7296932 CG4889 wg 10229 1.355042017 7296512 2.883225209 7295650 3.712643678 7295650 0 0 0 0 0 0 2 1 1 1 1 0 3 2 2 2 2 0 1 0 0 0 0 0 2L_7299287_7300660 2L 7299287 7300660 CG4889 wg 6501 2.457983193 7300211 4.888785913 7300211 7.247648903 7300211 1 0 1 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 2 1 1 0 0 0 2L_7304125_7305519 2L 7304125 7305519 CG4889 wg 1642 2.410714286 7305073 3.442075996 7304515 4.846394984 7304515 0 0 0 0 0 0 4 4 4 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_7306817_7307116 2L 7306817 7307116 CG4889 wg 45 4.158613445 7306922 2.242817424 7306922 2.867293626 7306922 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7309885_7311229 2L 7309885 7311229 CG4889 wg transcript overlap 2.260504202 7310248 2.366079703 7309976 4.425287356 7310785 0 0 0 0 0 0 3 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7311769_7312592 2L 7311769 7312592 CG4889 wg transcript overlap 2.558823529 7312146 3.041705283 7312146 4.098223615 7312146 0 0 0 0 0 0 1 1 1 1 1 0 2 1 1 1 1 1 2 0 0 0 0 0 2L_7414298_7414538 2L 7414298 7414538 CG5229 chm transcript overlap 1.013655462 7414386 1.676552363 7414386 2.981191223 7414386 0 0 0 0 0 0 2 2 2 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_7491019_7491544 2L 7491019 7491544 CG6641 Pbprp5 5816 0.964285714 7491381 1.857275255 7491381 2.707419018 7491381 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_7512367_7512928 2L 7512367 7512928 CG33529 Rapgap1 transcript overlap 1.257352941 7512757 3.086190918 7512477 4.561128527 7512477 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_7515340_7515599 2L 7515340 7515599 CG33529 Rapgap1 transcript overlap 1.347689076 7515429 1.803521779 7515429 2.675026123 7515429 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_7516437_7516717 2L 7516437 7516717 CG33529 Rapgap1 transcript overlap 1.06512605 7516547 1.892493049 7516547 3.172413793 7516547 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_7519634_7520174 2L 7519634 7520174 CG33529 Rapgap1 transcript overlap 2.117647059 7520008 1.945319741 7519744 2.206896552 7520008 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_7526157_7527515 2L 7526157 7527515 CG33529 Rapgap1 transcript overlap 1.759453782 7527083 3.882298424 7527083 5.20585162 7527083 0 1 1 0 0 0 2 2 0 0 0 0 4 2 1 0 0 0 2 0 0 0 0 0 2L_7543879_7544490 2L 7543879 7544490 CG33529 Rapgap1 TSS overlap 1.680672269 7544256 2.824837813 7544256 3.878787879 7544256 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_7632575_7633120 2L 7632575 7633120 CG13792 CG13792 12877 1.514705882 7632685 1.913809082 7632965 2.409613375 7632965 0 0 0 0 0 0 2 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 2L_7639910_7640448 2L 7639910 7640448 CG13792 CG13792 5549 2.18802521 7640278 2.155699722 7640278 2.594566353 7640278 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 2L_7687455_7687735 2L 7687455 7687735 CG6976 Myo28B1 transcript overlap 1.069327731 7687565 1.490268767 7687565 2.338557994 7687565 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_7772010_7772272 2L 7772010 7772272 CG7191 CG7191 transcript overlap 1.846638655 7772120 2.84244671 7772120 2.267502612 7772120 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_7799784_7800200 2L 7799784 7800200 CG7138 CG14536 r2d2 CG14536 TSS overlap 6.973739496 7799955 2.342910102 7799955 3.253918495 7799955 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_7827979_7828806 2L 7827979 7828806 CG7109 mts transcript overlap 1.943277311 7828089 2.372567192 7828089 2.501567398 7828356 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 2L_7887405_7887532 2L 7887405 7887532 CG7102 CG7102 TSS overlap 1.087184874 7887439 1.547729379 7887439 2.237199582 7887439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_7932979_7933213 2L 7932979 7933213 CG14532 CG14532 32944 2.06302521 7933070 3.416126043 7933070 3.917450366 7933070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2L_7990050_7990555 2L 7990050 7990555 CG7228 CG7228 transcript overlap 1.109243697 7990408 1.731232623 7990136 2.50261233 7990136 0 0 0 0 0 0 2 1 1 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 2L_8030675_8031172 2L 8030675 8031172 CG7392 Cka TSS overlap 2.600840336 8030874 2.346617238 8030874 2.691745037 8030874 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8081533_8082216 2L 8081533 8082216 CG7586 Mcr transcript overlap 1.278361345 8082047 3.524559778 8081767 3.208986416 8081767 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_8088040_8088368 2L 8088040 8088368 CG31605 Bsg transcript overlap 2.601890756 8088150 2.409638554 8088150 2.955067921 8088150 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2L_8092016_8092279 2L 8092016 8092279 CG31605 Bsg transcript overlap 1.890756303 8092126 2.926784059 8092126 2.469174504 8092126 0 0 0 0 0 0 1 1 1 1 1 1 3 2 2 1 1 1 0 0 0 0 0 0 2L_8145240_8145788 2L 8145240 8145788 CG8552 CG8552 transcript overlap 1.807773109 8145350 3.990732159 8145350 5.988505747 8145350 0 1 1 0 0 0 3 1 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 2L_8156687_8157237 2L 8156687 8157237 CG8552 CG8552 transcript overlap 2.357142857 8156792 3.732159407 8157067 5.112852665 8157067 1 0 1 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_8167215_8167477 2L 8167215 8167477 CG8498 CG8498 4890 1.088235294 8167309 1.905468026 8167309 3.434691745 8167309 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8168063_8168343 2L 8168063 8168343 CG8486 CG8486 4727 1.203781513 8168173 2.604263207 8168173 3.094043887 8168173 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8208906_8209746 2L 8208906 8209746 CG8409 Su(var)205 1387 3.048319328 8209296 2.810009268 8209296 5.037617555 8209016 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8266339_8267011 2L 8266339 8267011 CG8049 Btk29A transcript overlap 1.853991597 8266838 6.064874884 8266838 9.258098224 8266838 0 1 1 0 0 0 4 2 0 0 0 0 5 1 1 0 0 0 0 0 0 0 0 0 2L_8287438_8288360 2L 8287438 8288360 CG8049 Btk29A transcript overlap 1.349789916 8287802 2.129749768 8287548 2.859979101 8287548 0 0 0 0 0 0 3 2 2 1 1 0 3 2 2 1 0 0 2 1 1 0 0 0 2L_8289910_8290137 2L 8289910 8290137 CG8049 Btk29A transcript overlap 1.453781513 8289993 2.372567192 8289993 1.789968652 8289993 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_8302772_8302982 2L 8302772 8302982 CG7870 CG7870 transcript overlap 1.710084034 8302882 1.685820204 8302882 2.513061651 8302882 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_8348412_8348563 2L 8348412 8348563 CG7778 CG7778 transcript overlap 1.240546218 8348483 1.574606117 8348483 1.858934169 8348483 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8359253_8359785 2L 8359253 8359785 CG7627 CG7627 transcript overlap 1.141806723 8359339 2.853568119 8359339 2.821316614 8359339 0 0 0 0 0 0 3 3 1 1 0 0 3 2 1 0 0 0 2 2 2 2 0 0 2L_8376830_8377108 2L 8376830 8377108 CG17294 CG17294 TSS overlap 1.213235294 8377008 1.758109361 8377008 2.437826541 8377008 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_8382855_8383417 2L 8382855 8383417 CG17295 CG17295 transcript overlap 2.109243697 8382895 2.859128823 8383035 4.399164054 8383035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_8384570_8385047 2L 8384570 8385047 CG13384 CG13384 transcript overlap 1.790966387 8384599 3.077849861 8384879 4.992685475 8384879 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_8386868_8387402 2L 8386868 8387402 CG13384 CG13384 transcript overlap 1.765756303 8386978 3.139017609 8387258 3.990595611 8387258 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_8415689_8417207 2L 8415689 8417207 CG13388 Akap200 TSS overlap 3.316176471 8415719 6.024096386 8416588 9.234064786 8416588 1 0 1 0 0 0 2 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2L_8478404_8478672 2L 8478404 8478672 CG33194 CheA29a 1055 1.007352941 8478514 2.30583874 8478514 2.770114943 8478514 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8479185_8479730 2L 8479185 8479730 CG33194 CheA29a 1836 1.108193277 8479575 1.478220575 8479575 2.436781609 8479575 0 0 0 0 0 0 1 1 1 1 1 1 2 2 2 2 1 0 0 0 0 0 0 0 2L_8510501_8510780 2L 8510501 8510780 CG13096 CG13096 transcript overlap 0.851890756 8510611 2.288229842 8510611 3.118077325 8510611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8511864_8511970 2L 8511864 8511970 CG13096 CG13096 29 2.294117647 8511887 1.419833179 8511887 1.376175549 8511887 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8521747_8522356 2L 8521747 8522356 CG10593 Acer TSS overlap 1.421218487 8521906 7.407784986 8521906 10.45768025 8521906 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_8545361_8546049 2L 8545361 8546049 CG18405 Sema-1a transcript overlap 1.352941176 8545954 2.552363299 8545751 3.526645768 8545751 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2L_8551226_8551634 2L 8551226 8551634 CG18405 Sema-1a transcript overlap 2.175420168 8551336 2.775718258 8551336 2.284221526 8551336 0 0 0 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2L_8809697_8810218 2L 8809697 8810218 CG18024 SoxN 15407 1.707983193 8810056 3.574606117 8810056 5.76907001 8810056 0 1 1 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_8811323_8811835 2L 8811323 8811835 CG18024 SoxN 13790 1.888655462 8811433 1.915662651 8811433 2.571577847 8811433 0 0 0 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 1 1 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 2L_8825200_8825683 2L 8825200 8825683 CG18024 SoxN TSS overlap 2.121848739 8825590 2.411492122 8825310 2.026123302 8825590 0 0 0 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_8832084_8832897 2L 8832084 8832897 CG18024 SoxN 6459 2.74894958 8832448 4.892493049 8832448 6.539184953 8832448 1 0 1 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 3 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2L_8838994_8839532 2L 8838994 8839532 CG18024 SoxN 13369 0.993697479 8839362 2.291010195 8839362 3.280041797 8839362 0 0 0 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 2 2 1 1 1 0 3 2 1 1 1 0 0 0 0 0 0 0 2L_8841307_8842609 2L 8841307 8842609 CG18024 SoxN 15682 4.200630252 8842161 9.721964782 8842161 13.74399164 8842161 1 0 1 0 0 1 "Cremazy et al., 2000; Stathopoulos et al., 2002 " 1 0 0 0 0 0 1 0 0 0 0 0 3 2 1 1 0 0 2L_8845744_8847674 2L 8845744 8847674 CG32986 CG32986 15133 1.870798319 8846094 5.980537535 8846920 8.614420063 8846920 0 1 1 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 2L_8848744_8850048 2L 8848744 8850048 CG32986 CG32986 12759 7.339285714 8849405 17.5931418 8849405 22.81295716 8849405 1 0 1 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 1 1 0 0 0 0 2L_8851973_8852518 2L 8851973 8852518 CG32986 CG32986 10289 1.769957983 8852355 3.204819277 8852355 3.732497388 8852355 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_8872129_8872652 2L 8872129 8872652 CG9483 CG9483 5362 1.365546218 8872501 3.046339203 8872501 4.32183908 8872501 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_8875575_8876421 2L 8875575 8876421 CG9483 CG9483 8808 1.62605042 8875973 8.113994439 8875973 14.41065831 8875973 0 1 1 0 0 0 4 3 2 2 2 2 2 2 2 2 2 2 1 1 0 0 0 0 2L_8936699_8936966 2L 8936699 8936966 CG9496 Tsp29Fb 424 0.806722689 8936807 1.202965709 8936807 2.016718913 8936807 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_8954740_8955564 2L 8954740 8955564 CG31886 CG31886 transcript overlap 1.181722689 8954845 2.248378128 8955115 4.532915361 8955115 0 0 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_8957083_8957613 2L 8957083 8957613 CG31886 CG31886 transcript overlap 2.231092437 8957186 2.506024096 8957186 2.468129572 8957186 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 1 1 0 0 0 2L_8991567_8991846 2L 8991567 8991846 CG9555 CG9555 217 1.660714286 8991676 2.09823911 8991676 2.516196447 8991676 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_9012355_9013850 2L 9012355 9013850 CG13102 CG13102 transcript overlap 1.49789916 9012728 7.359592215 9013289 9.257053292 9013289 0 1 1 0 0 0 6 3 3 1 0 0 5 2 2 0 0 0 0 0 0 0 0 0 2L_9087606_9088159 2L 9087606 9088159 CG18241 Toll-4 transcript overlap 0.987394958 9087709 1.930491196 9087989 2.816091954 9087989 0 0 0 0 0 0 3 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2L_9124441_9125027 2L 9124441 9125027 CG32982 CG32982 724 1.531512605 9124551 2.362372567 9124551 3.384535005 9124551 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_9126195_9126396 2L 9126195 9126396 CG32982 CG32982 transcript overlap 2.114495798 9126297 2.314179796 9126297 3.553814002 9126297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_9137967_9138527 2L 9137967 9138527 CG32982 CG32982 transcript overlap 2.507352941 9138357 3.696014829 9138357 4.524555904 9138357 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 2L_9144762_9147130 2L 9144762 9147130 CG32982 CG32982 transcript overlap 2.721638655 9145897 6.533827618 9146437 8.92476489 9146437 1 0 1 0 0 0 3 3 3 3 3 3 7 7 6 4 4 3 4 1 0 0 0 0 2L_9149812_9151396 2L 9149812 9151396 CG32982 CG32982 transcript overlap 2.165966387 9151237 4.381835032 9151097 3.44200627 9151097 0 0 0 0 0 0 5 2 2 2 2 1 5 5 5 5 4 2 1 0 0 0 0 0 2L_9158923_9159190 2L 9158923 9159190 CG32982 CG32982 transcript overlap 2.034663866 9159033 1.641334569 9159033 2.029258098 9159033 0 0 0 0 0 0 2 1 1 1 1 0 2 1 1 1 1 0 0 0 0 0 0 0 2L_9225856_9226479 2L 9225856 9226479 CG13109 tai transcript overlap 1.305672269 9226302 2.148285449 9226302 2.8892372 9226302 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 2L_9330734_9331084 2L 9330734 9331084 CG3738 Cks30A TSS overlap 2.143907563 9330775 1.795180723 9330914 2.905956113 9330914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_9421271_9421547 2L 9421271 9421547 CG3759 CG3759 transcript overlap 1.507352941 9421377 1.974050046 9421377 2.478578892 9421377 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_9431474_9431961 2L 9431474 9431961 CG3766 scat transcript overlap 1.557773109 9431654 4.21686747 9431654 6.808777429 9431654 0 1 1 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_9449057_9449577 2L 9449057 9449577 CG3779 numb transcript overlap 2.818277311 9449138 2.97497683 9449138 3.630094044 9449138 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_9452888_9453153 2L 9452888 9453153 CG3779 numb transcript overlap 1.201680672 9452984 1.525486562 9452984 2.357366771 9452984 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_9454180_9455027 2L 9454180 9455027 CG3779 numb transcript overlap 2.282563025 9454557 10.16496756 9454557 10.87147335 9454557 1 0 1 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 2L_9478057_9478336 2L 9478057 9478336 CG4422 Gdi 16591 1.871848739 9478167 1.198331789 9478167 1.847439916 9478167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_9485098_9485373 2L 9485098 9485373 CG4422 Gdi 9554 2.401260504 9485220 2.717330862 9485220 2.772204807 9485220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_9521228_9521872 2L 9521228 9521872 CG3811 Oatp30B transcript overlap 2.330882353 9521259 2.128822984 9521511 2.409613375 9521511 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_9567635_9568158 2L 9567635 9568158 CG3838 CG3838 734 1.317226891 9567992 2.290083411 9567992 2.997910136 9567992 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2L_9570115_9570696 2L 9570115 9570696 CG3838 CG3838 transcript overlap 1.179621849 9570505 4.28544949 9570365 7.409613375 9570505 0 1 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 2L_9582891_9583673 2L 9582891 9583673 CG12245 gcm 1149 1.111344538 9583001 2.262279889 9583001 3.272727273 9583001 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_9585063_9585612 2L 9585063 9585612 CG12245 gcm 3321 1.102941176 9585453 2.043558851 9585453 2.149425287 9585173 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_9601885_9602453 2L 9601885 9602453 CG4382 CG4382 993 1.546218487 9602285 4.020389249 9602285 5.739811912 9602285 0 1 1 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_9609665_9610003 2L 9609665 9610003 CG3858 gcm2 transcript overlap 1.962184874 9609845 3.481000927 9609845 5.011494253 9609845 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_9637194_9637731 2L 9637194 9637731 CG15828 CG15828 3619 1.156512605 9637286 2.338276182 9637286 3.684430512 9637286 0 0 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_9698558_9698869 2L 9698558 9698869 CG4379 Pka-C1 transcript overlap 1.842436975 9698769 2.775718258 9698629 3.757575758 9698629 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_9705429_9705856 2L 9705429 9705856 CG31710 CG3959 CG31710 pelo transcript overlap 3.142857143 9705768 2.2557924 9705768 3.058516196 9705539 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_9709117_9709894 2L 9709117 9709894 CG4364 CG4364 transcript overlap 2.284663866 9709746 1.84244671 9709212 3.360501567 9709212 0 0 0 0 0 0 3 1 1 1 0 0 2 2 2 1 1 0 0 0 0 0 0 0 2L_9918192_9918730 2L 9918192 9918730 CG4598 CG4598 TSS overlap 3.455882353 9918231 1.998146432 9918492 4.102403344 9918492 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_9921653_9921791 2L 9921653 9921791 CG4592 CG4592 transcript overlap 1.901260504 9921692 1.871177016 9921692 2.576802508 9921692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_9938206_9939040 2L 9938206 9939040 CG4619 CG31713 CG4619 CG31713 TSS overlap 6.119747899 9938799 3.844300278 9938659 5.728317659 9938659 1 0 1 0 0 0 4 3 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 2L_9957050_9957587 2L 9957050 9957587 CG5846 CG5846 transcript overlap 1.578781513 9957206 2.827618165 9957311 4.981191223 9957311 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 2 0 0 0 0 0 2L_9984011_9984860 2L 9984011 9984860 CG4722 CG13130 bib CG13130 TSS overlap 11.36659664 9984121 3.258572753 9984690 5.390804598 9984690 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_9987858_9990262 2L 9987858 9990262 CG4722 bib transcript overlap 5.049369748 9988508 13.21964782 9988508 16.61755486 9988508 1 0 1 0 0 0 4 4 4 4 4 3 8 6 5 4 4 3 2 0 0 0 0 0 2L_9992433_9992965 2L 9992433 9992965 CG4722 bib transcript overlap 2.066176471 9992515 2.708063021 9992515 4.067920585 9992515 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 2L_10009725_10010178 2L 10009725 10010178 CG4758 Trp1 transcript overlap 1.442226891 10009835 2.331788693 10009835 2.247648903 10009835 0 0 0 0 0 0 3 2 2 1 1 0 1 1 1 1 0 0 2 0 0 0 0 0 2L_10058592_10059130 2L 10058592 10059130 CG4799 Pen transcript overlap 1.699579832 10058696 2.445783133 10058696 3.714733542 10058696 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_10103902_10104178 2L 10103902 10104178 CG13128 CG13128 transcript overlap 1.18592437 10104012 1.295644115 10104012 2.611285266 10104012 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_10210167_10210646 2L 10210167 10210646 CG5727 CG5727 transcript overlap 1.863445378 10210557 2.326227989 10210277 2.528735632 10210277 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2L_10259818_10260388 2L 10259818 10260388 CG5671 Pten transcript overlap 1.404411765 10260218 3.840593142 10260072 4.805642633 10260218 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_10264484_10264727 2L 10264484 10264727 CG18619 CG18619 transcript overlap 1.853991597 10264594 3.003707136 10264594 5.108672936 10264594 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_10314002_10314254 2L 10314002 10314254 CG5384 CG5384 transcript overlap 1.783613445 10314112 1.203892493 10314112 1.175548589 10314112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_10339323_10339946 2L 10339323 10339946 CG5029 SamDC TSS overlap 3.06407563 10339370 3.023169601 10339496 5.034482759 10339496 1 0 1 0 0 0 3 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 2L_10341489_10341826 2L 10341489 10341826 CG31715 CG31715 TSS overlap 2.066176471 10341527 2.193697868 10341663 2.249738767 10341527 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_10396126_10396485 2L 10396126 10396485 CG5362 CG5362 TSS overlap 2.838235294 10396283 1.72381835 10396154 2.059561129 10396154 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_10397605_10398012 2L 10397605 10398012 CG31716 CG31716 transcript overlap 1.167016807 10397715 1.653382762 10397715 2.625914316 10397715 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_10418963_10419290 2L 10418963 10419290 CG5313 RfC3 TSS overlap 1.378151261 10419050 1.547729379 10419190 2.103448276 10419190 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_10515513_10515673 2L 10515513 10515673 CG7400 Fatp transcript overlap 0.610062893 10515580 0.787581699 10515580 0.972222222 10515580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_10548614_10549385 2L 10548614 10549385 CG31721 Trim9 transcript overlap 2.140461216 10548937 4.230936819 10548937 7.276388889 10548937 1 0 1 0 0 1 "Biemar et al., 2006, based on in situs" 2 2 2 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_10609429_10609722 2L 10609429 10609722 CG31721 Trim9 transcript overlap 0.714884696 10609563 2.606753813 10609563 1.055555556 10609563 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_10611296_10612090 2L 10611296 10612090 CG31721 Trim9 transcript overlap 1.266247379 10611677 3.045751634 10611397 4.683333333 10611677 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 1 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2L_10817594_10817884 2L 10817594 10817884 CG6713 Nos transcript overlap 0.721174004 10817714 2.605664488 10817714 3.081944444 10817714 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_10964419_10964997 2L 10964419 10964997 CG33129 CG33129 5278 1.795597484 10964536 3.104575163 10964816 4.241666667 10964816 0 0 0 0 0 0 2 1 0 0 0 0 3 2 2 1 0 0 2 0 0 0 0 0 2L_11070798_11071148 2L 11070798 11071148 CG14915 CG14915 TSS overlap 4.067085954 11070908 2.821350763 11070908 4.331944444 11070908 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_11081925_11082195 2L 11081925 11082195 CG14919 Ast-C 528 0.587002096 11082025 1.525054466 11082025 2.631944444 11082025 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_11286685_11287214 2L 11286685 11287214 CG14925 Osi21 1082 1.875262055 11286795 3.310457516 11286795 3.726388889 11286795 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_11343860_11344136 2L 11343860 11344136 CG14926 CG14926 597 0.927672956 11343970 2.794117647 11343970 3.130555556 11343970 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_11445817_11446023 2L 11445817 11446023 CG6464 salm 214 1.344863732 11445853 1.388888889 11445853 1.684722222 11445853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_11447614_11448150 2L 11447614 11448150 CG6464 salm 2011 2.278825996 11447702 4.901960784 11447702 8.215277778 11447702 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_11455311_11455852 2L 11455311 11455852 CG6464 salm 9708 1.172955975 11455421 2.522875817 11455421 4.35 11455682 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 2 0 2L_11485834_11486368 2L 11485834 11486368 CG4922 sala TSS overlap 2.115303983 11486198 4.37037037 11485944 6.776388889 11485944 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_11548537_11549101 2L 11548537 11549101 CG31706 CG31706 17488 0.79245283 11548931 1.550108932 11548931 2.944444444 11548722 0 0 0 0 0 0 4 4 1 0 0 0 4 2 2 0 0 0 0 0 0 0 0 0 2L_11793816_11794134 2L 11793816 11794134 CG14937 CG14937 TSS overlap 1.635220126 11793894 2.212418301 11793894 2.998611111 11793894 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_11970677_11971482 2L 11970677 11971482 CR31863 bft TSS overlap 1.544025157 11971290 8.561002179 11971290 15.375 11971010 0 1 1 0 0 0 3 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_11977228_11978019 2L 11977228 11978019 CG16965 CG16965 3984 1.261006289 11977831 3.241830065 11977338 3.659722222 11977338 0 0 0 0 0 0 4 1 1 0 0 0 3 2 2 0 0 0 0 0 0 0 0 0 2L_11992877_11993439 2L 11992877 11993439 CG31866 CG31866 TSS overlap 1.364779874 11992901 3.010893246 11993182 3.872222222 11993286 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_11994498_11994832 2L 11994498 11994832 CG18789 CG18789 transcript overlap 1.35115304 11994570 1.983660131 11994570 3.436111111 11994570 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_11996781_11997283 2L 11996781 11997283 CG31865 CG31865 TSS overlap 1.379454927 11996802 2.576252723 11997114 4.1125 11997114 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_11998229_11998754 2L 11998229 11998754 CG18787 CG18787 transcript overlap 1.303983229 11998339 1.721132898 11998595 3.5 11998595 0 0 0 0 0 0 2 0 0 0 0 0 4 3 0 0 0 0 1 0 0 0 0 0 2L_12002877_12003792 2L 12002877 12003792 CG6746 CG6746 601 2.593291405 12003120 10.31154684 12003120 16.05277778 12003120 1 0 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_12007066_12007921 2L 12007066 12007921 CG5279 Rh5 455 2.174004193 12007731 5.074074074 12007451 11.25555556 12007451 1 0 1 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_12010444_12012582 2L 12010444 12012582 CG5279 Rh5 2068 2.072327044 12011395 5.015250545 12010554 6.991666667 12010831 1 0 1 0 0 0 5 3 3 2 2 1 5 2 0 0 0 0 0 0 0 0 0 0 2L_12079753_12080608 2L 12079753 12080608 CG14947 CG14947 2930 2.025157233 12080106 5.956427015 12080106 12.91666667 12080106 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_12081249_12081528 2L 12081249 12081528 CG6716 prd 4264 2.007337526 12081359 2.775599129 12081359 4.886111111 12081359 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12085328_12085869 2L 12085328 12085869 CG6716 prd TSS overlap 1.533542977 12085769 1.75708061 12085629 2.604166667 12085769 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12092792_12093314 2L 12092792 12093314 CG5325 CG5325 457 1.610062893 12092900 3.704793028 12092900 3.202777778 12092900 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_12093644_12093979 2L 12093644 12093979 CG5325 CG5325 TSS overlap 1.858490566 12093679 1.603485839 12093809 3.026388889 12093679 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_12366066_12366307 2L 12366066 12366307 CG31761 bru-2 transcript overlap 2.052410901 12366137 2.623093682 12366137 4.186111111 12366137 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 2L_12457269_12458378 2L 12457269 12458378 CG5461 bun transcript overlap 1.50524109 12457411 4.027233115 12457929 6.543055556 12457929 0 1 1 0 0 1 "Biemar et al., 2006, based on in situs" 3 2 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_12459941_12460206 2L 12459941 12460206 CG5461 bun transcript overlap 1.440251572 12460042 2.061002179 12460042 3.588888889 12460042 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12461263_12461616 2L 12461263 12461616 CG5461 bun transcript overlap 2.190775681 12461443 2.776688453 12461443 3.141666667 12461443 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_12465846_12467121 2L 12465846 12467121 CG5461 bun transcript overlap 1.375262055 12466760 3.035947712 12466760 4.384722222 12466760 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 2 2 0 0 0 0 4 4 3 0 0 0 1 0 0 0 0 0 2L_12478523_12479064 2L 12478523 12479064 CG5461 bun transcript overlap 1.454926625 12478633 2.749455338 12478885 3.538888889 12478885 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 2L_12483586_12484081 2L 12483586 12484081 CG5461 bun transcript overlap 1.730607966 12483887 2.39869281 12483609 2.915277778 12483609 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_12507829_12508298 2L 12507829 12508298 CG5461 bun transcript overlap 1.497903564 12508142 2.322440087 12507939 3.729166667 12507939 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12662535_12663319 2L 12662535 12663319 CG12287 pdm2 transcript overlap 1.185534591 12662925 2.430283224 12663177 3.344444444 12663177 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_12665974_12666528 2L 12665974 12666528 CG12287 pdm2 transcript overlap 2.248427673 12666358 3.648148148 12666358 5.805555556 12666078 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 2L_12679319_12679873 2L 12679319 12679873 CG12287 pdm2 transcript overlap 1.596436059 12679439 4.204793028 12679439 6.615277778 12679439 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12769126_12769394 2L 12769126 12769394 CG15483 CG15483 7286 2.174004193 12769236 3.9291939 12769236 6.458333333 12769236 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_12814567_12814857 2L 12814567 12814857 CG12283 kek1 7930 0.897274633 12814687 0.861655773 12814687 0.801388889 12814687 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_12846913_12847710 2L 12846913 12847710 CG12283 kek1 24126 1.486373166 12847303 4.769063181 12847303 5.618055556 12847303 0 1 1 0 0 0 4 3 3 3 2 2 5 4 4 4 4 4 1 0 0 0 0 0 2L_12859142_12859659 2L 12859142 12859659 CG12283 kek1 36355 1.537735849 12859489 3.781045752 12859489 3.2625 12859489 0 0 0 0 0 0 2 2 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_12899413_12899653 2L 12899413 12899653 CG5983 ACXC 12877 1.509433962 12899516 2.75708061 12899516 4.608333333 12899516 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_13004453_13005010 2L 13004453 13005010 CG5092 Tor TSS overlap 1.222222222 13004560 2.905228758 13004560 4.226388889 13004840 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_13126112_13126925 2L 13126112 13126925 CG5122 CG5122 3688 1.041928721 13126478 3.093681917 13126478 4.948611111 13126478 0 0 0 0 0 0 3 3 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2L_13211776_13212093 2L 13211776 13212093 CG15482 CG15482 TSS overlap 1.992662474 13211817 1.881263617 13211958 3.765277778 13211958 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_13215936_13216142 2L 13215936 13216142 CR31854 snRNA:U2:34ABb 97 2.056603774 13216022 1.996732026 13216022 3.954166667 13216022 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_13224850_13225952 2L 13224850 13225952 CG15480 CG15480 TSS overlap 4.137316562 13225782 10.80065359 13225502 15.61944444 13225502 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 2L_13226921_13228034 2L 13226921 13228034 CG16813 CG16813 TSS overlap 3.462264151 13227586 8.187363834 13227306 12.95277778 13227306 1 0 1 0 0 0 3 2 2 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_13229160_13229972 2L 13229160 13229972 CG16815 CG16815 TSS overlap 1.458071279 13229277 3.586056645 13229803 6.281944444 13229803 0 1 1 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2L_13234099_13234379 2L 13234099 13234379 CG15479 CG15479 transcript overlap 1.135220126 13234209 2.455337691 13234209 3.477777778 13234209 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_13234683_13235338 2L 13234683 13235338 CG15479 CG15479 88 1.471698113 13235192 3.041394336 13234988 4.608333333 13234988 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_13515402_13515652 2L 13515402 13515652 CG9239 B4 transcript overlap 1.266247379 13515512 3.315904139 13515512 4.315277778 13515512 0 0 0 0 0 0 2 1 0 0 0 0 4 3 1 1 0 0 0 0 0 0 0 0 2L_13597092_13597892 2L 13597092 13597892 CG7147 kuz transcript overlap 2.667714885 13597473 5.665577342 13597473 6.7875 13597473 1 0 1 0 0 0 1 0 0 0 0 0 3 2 2 2 0 0 2 0 0 0 0 0 2L_13665816_13666342 2L 13665816 13666342 CG18507 CG18507 transcript overlap 1.226415094 13666184 2.85620915 13666184 5.016666667 13666184 0 1 1 0 0 0 2 2 2 2 2 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_13671950_13672218 2L 13671950 13672218 CG18507 CG18507 6422 2.156184486 13672049 3.206971678 13672049 4.647222222 13672049 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 2L_13850664_13851766 2L 13850664 13851766 CG31811 cenG1A transcript overlap 1.796645702 13851317 4.5708061 13851317 6.765277778 13851317 0 1 1 0 0 0 1 0 0 0 0 0 3 2 2 2 1 0 1 0 0 0 0 0 2L_13867435_13868230 2L 13867435 13868230 CG31811 cenG1A transcript overlap 2.831236897 13867824 5.696078431 13867824 9.476388889 13867824 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_13869344_13869898 2L 13869344 13869898 CG31811 cenG1A transcript overlap 1.141509434 13869454 2.078431373 13869454 3.077777778 13869454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_13964074_13964317 2L 13964074 13964317 CG33119 CG33119 transcript overlap 1.061844864 13964173 2.169934641 13964173 3.733333333 13964173 0 0 0 0 0 0 2 2 2 2 1 0 2 2 2 2 0 0 0 0 0 0 0 0 2L_14023983_14024718 2L 14023983 14024718 CG31840 CG31840 TSS overlap 2.0639413 14024243 3.885620915 14024574 5.611111111 14024574 1 0 1 0 0 0 2 2 2 1 1 1 5 4 3 1 1 1 0 0 0 0 0 0 2L_14025760_14028042 2L 14025760 14028042 CG4500 CG4500 TSS overlap 3.980083857 14027320 5.38453159 14025867 6.738888889 14025867 1 0 1 0 0 0 0 0 0 0 0 0 8 3 2 1 0 0 2 1 1 1 0 0 2L_14040110_14040968 2L 14040110 14040968 CG31771 CG31771 transcript overlap 1.129979036 14040219 2.166666667 14040824 2.798611111 14040219 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_14261570_14263064 2L 14261570 14263064 CG15288 wb 458 7.031446541 14262253 28.4956427 14262253 31.8125 14262253 1 0 1 0 0 0 3 2 2 1 1 0 3 3 2 0 0 0 1 1 1 1 1 0 2L_14264719_14265615 2L 14264719 14265615 CG15288 wb transcript overlap 1.704402516 14265217 8.691721133 14265217 11.26944444 14265217 0 1 1 0 0 0 1 1 0 0 0 0 3 3 3 3 2 0 1 1 1 0 0 0 2L_14303810_14304092 2L 14303810 14304092 CG15288 wb transcript overlap 1.693920335 14303936 1.495642702 14303936 2.386111111 14303936 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_14383965_14384197 2L 14383965 14384197 CG3478 ppk 2795 0.950733753 14384036 2.715686275 14384036 4.55 14384036 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2L_14430023_14430570 2L 14430023 14430570 CG3474 CG3474 4892 1.397274633 14430400 2.503267974 14430145 3.601388889 14430400 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 2L_14434605_14434870 2L 14434605 14434870 CG3474 CG3474 9474 1.374213836 14434715 2.862745098 14434715 2.880555556 14434715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_14435724_14436263 2L 14435724 14436263 CG3474 CG3474 10593 2.380503145 14436093 4.60130719 14436093 6.573611111 14436093 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_14443525_14444364 2L 14443525 14444364 CG15283 CG15283 6452 2.085953878 14444194 5.32788671 14444194 6.704166667 14444194 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_14445434_14446499 2L 14445434 14446499 CG15283 CG15283 4317 1.701257862 14445795 10.583878 14445795 16.72361111 14445795 0 1 1 0 0 0 2 2 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_14464716_14464991 2L 14464716 14464991 CG15283 CG15283 13900 1.303983229 14464826 2.513071895 14464826 3.495833333 14464826 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_14478327_14478596 2L 14478327 14478596 CG4491 noc 12266 0.381551363 14478429 2.62962963 14478429 0.515277778 14478429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_14484754_14486652 2L 14484754 14486652 CG4491 noc 4210 2.012578616 14486482 4.387799564 14486254 6.741666667 14486254 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_14489015_14489519 2L 14489015 14489519 CG4491 noc 1343 2.29769392 14489374 3.264705882 14489374 6.029166667 14489374 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_14490561_14491118 2L 14490561 14491118 CG4491 noc TSS overlap 2.384696017 14490671 3.446623094 14490671 5.051388889 14490671 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_14517312_14517901 2L 14517312 14517901 CR31977 tRNA:G3:35Ba 190 1.151991614 14517702 2.960784314 14517422 2.627777778 14517422 0 0 0 0 0 0 1 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 2L_14554767_14555046 2L 14554767 14555046 CG4218 CG4218 5692 1.647798742 14554877 2.793028322 14554877 3.440277778 14554877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_14577136_14577687 2L 14577136 14577687 CG3473 CG3473 13410 1.078616352 14577518 3.320261438 14577246 4.552777778 14577246 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_14585001_14585514 2L 14585001 14585514 CR31983 tRNA:P:35Ba 13345 1.784067086 14585356 3.362745098 14585108 3.805555556 14585108 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_14736034_14736233 2L 14736034 14736233 CG31835 CG31835 transcript overlap 1.460167715 14736074 2.387799564 14736074 5.008333333 14736074 0 1 1 0 0 0 2 2 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2L_15052679_15053683 2L 15052679 15053683 CG7595 ck transcript overlap 1.908805031 15053102 2.979302832 15053102 4.431944444 15053319 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_15063953_15064211 2L 15063953 15064211 CG4170 CG3506 vig vas transcript overlap 4.378406709 15064123 2.608932462 15064007 1.204166667 15064123 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_15306760_15307319 2L 15306760 15307319 CG15259 nht 8516 1.765199161 15307150 2.40087146 15307150 4.176388889 15307150 0 0 0 0 0 0 2 1 1 1 1 0 2 1 1 1 0 0 2 1 0 0 0 0 2L_15309827_15310082 2L 15309827 15310082 CG15259 nht 5753 1.024109015 15309935 1.775599129 15309935 2.256944444 15309935 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_15315952_15316123 2L 15315952 15316123 CG15259 nht 117 1.323899371 15315974 3.151416122 15315974 4.683333333 15315974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_15319256_15319501 2L 15319256 15319501 CG15259 nht 3421 0.937106918 15319363 2.588235294 15319363 4.384722222 15319363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2L_15320030_15320870 2L 15320030 15320870 CG15259 nht 4195 1.636268344 15320700 5.966230937 15320700 8.281944444 15320700 0 1 1 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_15321924_15322204 2L 15321924 15322204 CG15259 nht 6089 1.056603774 15322034 3.324618736 15322034 3.3625 15322034 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_15329055_15329954 2L 15329055 15329954 CG3758 esg TSS overlap 2.139412998 15329854 4.502178649 15329434 6.247222222 15329714 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_15471864_15476418 2L 15471864 15476418 CG3956 sna TSS overlap 8.214884696 15475689 12.10893246 15475689 19.23611111 15475689 1 0 1 1 0 1 "Ip et al., 1992" 2 2 2 1 1 0 5 3 3 1 0 0 10 2 1 1 0 0 2L_15478046_15478590 2L 15478046 15478590 CG15257 Tim17b2 2107 1.820754717 15478156 3.852941176 15478156 4.809722222 15478422 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_15481464_15483061 2L 15481464 15483061 CG15257 Tim17b2 transcript overlap 6.761006289 15482028 20.67647059 15481754 31.43055556 15481754 1 0 1 0 0 0 4 4 1 0 0 0 8 7 5 4 0 0 2 1 0 0 0 0 2L_15486876_15488634 2L 15486876 15488634 CG15257 Tim17b2 transcript overlap 4.609014675 15488464 6.849673203 15488464 9.151388889 15488464 1 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 6 1 1 1 0 0 2L_15561972_15562512 2L 15561972 15562512 CG4192 kek3 12370 1.230607966 15562080 5.910675381 15562080 9.354166667 15562080 0 1 1 0 0 0 5 3 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_15652507_15653063 2L 15652507 15653063 CG31825 CG31825 transcript overlap 1.176100629 15652614 2.297385621 15652893 3.326388889 15652614 0 0 0 0 0 0 1 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2L_15686104_15686660 2L 15686104 15686660 CG33311 CG33311 transcript overlap 1.087002096 15686211 2.862745098 15686490 4.381944444 15686490 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_15725797_15726075 2L 15725797 15726075 CG3938 CycE transcript overlap 2.052410901 15725905 1.720043573 15725905 3.295833333 15725905 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_15731877_15732313 2L 15731877 15732313 CG3938 CycE transcript overlap 3.585953878 15731959 4.298474946 15731959 4.620833333 15731959 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 2L_15736900_15737999 2L 15736900 15737999 CG3938 CycE transcript overlap 1.497903564 15737831 3.442265795 15737010 4.275 15737831 0 0 0 0 0 0 4 4 4 4 0 0 3 3 3 2 1 1 0 0 0 0 0 0 2L_15738595_15739429 2L 15738595 15739429 CG3938 CycE transcript overlap 1.306079665 15738984 3.328976035 15739264 4.0625 15739264 0 0 0 0 0 0 1 0 0 0 0 0 4 2 1 0 0 0 1 0 0 0 0 0 2L_15743545_15744042 2L 15743545 15744042 CG3938 CycE transcript overlap 1.899371069 15743934 4.4291939 15743654 6.729166667 15743654 0 1 1 0 0 0 3 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_15757333_15758187 2L 15757333 15758187 CG3903 Gli transcript overlap 1.214884696 15757719 3.440087146 15758001 3.633333333 15757719 0 0 0 0 0 0 4 3 2 2 1 1 7 1 0 0 0 0 0 0 0 0 0 0 2L_15758327_15758542 2L 15758327 15758542 CG3903 Gli transcript overlap 1.629979036 15758379 1.920479303 15758379 2.781944444 15758379 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_15992639_15993070 2L 15992639 15993070 CG4838 beat-Ic 3396 0.668763103 15992910 1.984749455 15992728 1.295833333 15992910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_16230617_16231434 2L 16230617 16231434 CG12455 CG12455 transcript overlap 1.002096436 16230984 6.864923747 16230984 9.731944444 16230984 0 1 1 0 0 0 5 4 2 2 2 1 3 3 3 3 2 1 1 0 0 0 0 0 2L_16247250_16247740 2L 16247250 16247740 CG4993 PRL-1 transcript overlap 1.291404612 16247640 1.744008715 16247360 3.305555556 16247640 0 0 0 0 0 0 1 1 0 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 2L_16264603_16265119 2L 16264603 16265119 CG7664 crp transcript overlap 1.236897275 16264967 2.204793028 16264967 3.275 16264967 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_16275721_16276346 2L 16275721 16276346 CG7664 crp transcript overlap 2.056603774 16276066 3.693899782 16276066 5.219444444 16276066 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_16277127_16278640 2L 16277127 16278640 CG7664 crp transcript overlap 2.764150943 16277347 5.54248366 16277347 6.447222222 16277347 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_16315547_16316350 2L 16315547 16316350 CG5848 cact transcript overlap 2.744234801 16315900 3.425925926 16315900 4.508333333 16315900 0 0 0 0 0 0 0 0 0 0 0 0 4 1 1 0 0 0 3 1 1 0 0 0 2L_16319162_16319990 2L 16319162 16319990 CG5848 cact transcript overlap 4.606918239 16319549 11.85294118 16319549 16.82361111 16319549 1 0 1 0 0 0 2 2 1 1 1 0 2 2 2 2 2 2 1 1 1 1 1 1 2L_16321477_16322126 2L 16321477 16322126 CG5848 cact TSS overlap 2.57442348 16321886 2.338779956 16321606 2.848611111 16322026 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_16325727_16326383 2L 16325727 16326383 CG4440 CG4440 TSS overlap 2.117400419 16325897 6.628540305 16326177 7.752777778 16326177 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_16481918_16482112 2L 16481918 16482112 CG4952 dac 5 1.734800839 16481958 2.239651416 16481958 2.915277778 16481958 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_16584404_16584828 2L 16584404 16584828 CG31815 CG31815 13014 1.333333333 16584478 2.34204793 16584696 3.501388889 16584478 0 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_16639236_16639985 2L 16639236 16639985 CG31738 CG31738 transcript overlap 1.591194969 16639553 2.862745098 16639553 6 16639553 0 1 1 0 0 0 3 3 2 0 0 0 3 2 2 0 0 0 1 0 0 0 0 0 2L_16724988_16725445 2L 16724988 16725445 CG31782 CG31782 transcript overlap 1.182389937 16725347 4.664488017 16725067 0.979166667 16725347 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2L_16741976_16742895 2L 16741976 16742895 CG17912 CG17912 2643 2.799790356 16742429 10.90631808 16742429 16.96111111 16742429 1 0 1 0 0 0 3 2 2 1 1 1 0 0 0 0 0 0 4 1 1 0 0 0 2L_17217370_17218981 2L 17217370 17218981 CG15138 beat-IIIc transcript overlap 1.605870021 17218542 4.125272331 17218286 6.976388889 17218286 0 1 1 0 0 0 2 2 1 1 0 0 3 2 1 1 1 0 1 1 0 0 0 0 2L_17248872_17249533 2L 17248872 17249533 CG15138 beat-IIIc transcript overlap 1.131027254 17249465 2.131808279 17249262 4.694444444 17248982 0 0 0 0 0 0 5 4 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2L_17259161_17259682 2L 17259161 17259682 CG15138 beat-IIIc 2500 1.011530398 17259270 5.910675381 17259270 8.963888889 17259543 0 1 1 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_17262358_17263147 2L 17262358 17263147 CG15138 beat-IIIc 5697 1.51048218 17262680 3.276688453 17262680 4.445833333 17262680 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_17378176_17378962 2L 17378176 17378962 CG6860 CG6860 transcript overlap 6.225366876 17378542 12.52614379 17378542 19.53472222 17378542 1 0 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 2L_17379458_17379734 2L 17379458 17379734 CG6860 CG6860 transcript overlap 1.917190776 17379564 2.427015251 17379564 3.5125 17379564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_17606556_17607335 2L 17606556 17607335 CG15147 CG15147 14939 1.332285115 17607195 3.716775599 17607195 6.606944444 17606942 0 1 1 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2L_17731432_17731957 2L 17731432 17731957 CG7100 CadN transcript overlap 2.754716981 17731810 2.850762527 17731810 3.216666667 17731810 0 0 0 0 0 1 "Biemar et al., 2006" 1 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2L_17735126_17735665 2L 17735126 17735665 CG7100 CadN TSS overlap 1.511530398 17735236 1.879084967 17735366 3.284722222 17735366 0 0 0 0 0 1 "Biemar et al., 2006" 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_17736167_17736696 2L 17736167 17736696 CG7100 CadN 717 2.497903564 17736526 3.464052288 17736526 3.533333333 17736526 0 0 0 0 0 1 "Biemar et al., 2006" 0 0 0 0 0 0 1 1 1 0 0 0 3 3 1 0 0 0 2L_17739461_17740256 2L 17739461 17740256 CG7100 CadN 4011 1.590146751 17740095 2.758169935 17739842 4.963888889 17739842 0 0 0 0 0 1 "Biemar et al., 2006" 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_17744588_17745109 2L 17744588 17745109 CG7100 CadN 9138 2.551362683 17744939 6.737472767 17744696 4.752777778 17744939 1 0 1 0 0 1 "Biemar et al., 2006" 2 1 1 1 0 0 2 2 2 2 0 0 0 0 0 0 0 0 2L_17746765_17747317 2L 17746765 17747317 CG7100 CadN 11315 2.107966457 17747147 3.496732026 17747147 5.034722222 17747147 1 0 1 0 0 1 "Biemar et al., 2006" 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 2L_17751289_17751842 2L 17751289 17751842 CG7100 CadN 15839 2.677148847 17751672 4.160130719 17751672 2.933333333 17751672 0 0 0 0 0 1 "Biemar et al., 2006" 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2L_18073807_18074363 2L 18073807 18074363 CG5711 Arr1 TSS overlap 1.509433962 18074055 2.511982571 18074055 3.536111111 18074055 0 0 0 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2L_18087592_18088419 2L 18087592 18088419 CG15153 CG15153 TSS overlap 1.402515723 18088096 3.20043573 18088096 5.538888889 18088096 0 1 1 0 0 0 7 3 3 0 0 0 3 2 2 1 1 0 1 0 0 0 0 0 2L_18329537_18330079 2L 18329537 18330079 CG5803 Fas3 transcript overlap 1.895178197 18329908 4.874727669 18329908 7.861111111 18329908 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_18350299_18350808 2L 18350299 18350808 CG5803 Fas3 transcript overlap 1.246331237 18350638 3.44335512 18350638 5.630555556 18350638 0 1 1 0 0 0 3 3 0 0 0 0 2 2 0 0 0 0 2 2 2 0 0 0 2L_18353571_18354394 2L 18353571 18354394 CG5803 CG7157 Fas3 Acp36DE transcript overlap 3.344863732 18353677 2.694989107 18354224 4.813888889 18354224 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_18357149_18357692 2L 18357149 18357692 CG5803 Fas3 transcript overlap 1.977987421 18357256 5.41503268 18357256 5.075 18357256 0 1 1 0 0 0 1 1 1 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 2L_18399301_18399591 2L 18399301 18399591 CG31749 CG31749 17058 0.893081761 18399410 3.169934641 18399410 5.805555556 18399410 0 1 1 0 0 0 2 2 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 2L_18476223_18476740 2L 18476223 18476740 CG10283 CG10283 transcript overlap 1.689727463 18476327 2.577342048 18476327 4.411111111 18476327 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 2L_18479883_18480328 2L 18479883 18480328 CG10283 CG10283 transcript overlap 2.095387841 18479987 3.427015251 18479987 4.356944444 18479987 0 0 0 0 0 0 2 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2L_18482553_18483320 2L 18482553 18483320 CG10176 CG10176 transcript overlap 2.678197065 18482918 4.734204793 18482918 6.975 18482918 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2L_18519166_18519604 2L 18519166 18519604 CG10211 CG10211 transcript overlap 1.085953878 18519276 2.236383442 18519276 2.915277778 18519514 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2L_18611752_18613400 2L 18611752 18613400 CG15161 CG15162 CG15161 MESR3 TSS overlap 2.047169811 18611998 9.519607843 18611862 15.4125 18611862 1 0 1 0 0 0 3 1 0 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 2L_18648436_18648915 2L 18648436 18648915 CG15162 MESR3 transcript overlap 3.327044025 18648826 3.976034858 18648826 3.747222222 18648826 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 0 0 1 1 0 0 0 0 2L_18761202_18761716 2L 18761202 18761716 CG31753 ham transcript overlap 1.245283019 18761582 1.932461874 18761582 3.744444444 18761582 0 0 0 0 0 0 3 1 1 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2L_18803626_18804185 2L 18803626 18804185 CG10570 CG10570 2730 1.535639413 18804015 3.608932462 18803735 4.620833333 18803735 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 1 1 0 0 0 0 0 2L_18804738_18805018 2L 18804738 18805018 CG10570 CG10570 1897 0.958071279 18804848 2.076252723 18804848 3.016666667 18804848 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2L_18826366_18826822 2L 18826366 18826822 CG17597 CG17597 transcript overlap 10.66352201 18826687 1.923747277 18826436 3.013888889 18826436 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_18870798_18872110 2L 18870798 18872110 CG10619 tup transcript overlap 1.678197065 18871188 5.958605664 18871188 8.405555556 18871414 0 1 1 0 1 1 "Frank and Rushlow, 1996" 4 3 1 1 1 0 2 0 0 0 0 0 2 1 1 0 0 0 2L_18877093_18877657 2L 18877093 18877657 CG10619 tup TSS overlap 3.393081761 18877133 7.964052288 18877487 14.52222222 18877487 1 0 1 0 0 1 "Frank and Rushlow, 1996" 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2L_18891098_18891898 2L 18891098 18891898 CG10619 tup 13913 1.363731656 18891208 4.562091503 18891488 8.205555556 18891488 0 1 1 0 0 1 "Frank and Rushlow, 1996" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_18972889_18973169 2L 18972889 18973169 CG10431 CG10431 1988 1.51572327 18972999 1.847494553 18972999 3.093055556 18972999 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19130946_19131212 2L 19130946 19131212 CG10719 brat transcript overlap 5.881551363 19131056 3.138344227 19131056 1.893055556 19131056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19150491_19151491 2L 19150491 19151491 CG10719 brat transcript overlap 3.900419287 19151150 6.992374728 19150870 12.42638889 19150870 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_19151865_19152911 2L 19151865 19152911 CG10719 brat transcript overlap 1.987421384 19152254 4.145969499 19152254 6.225 19152254 0 1 1 0 0 0 3 1 1 0 0 0 3 1 1 0 0 0 2 0 0 0 0 0 2L_19153994_19155006 2L 19153994 19155006 CG10719 brat transcript overlap 11.43920335 19154424 2.767973856 19154809 4.843055556 19154809 0 0 0 0 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2L_19156906_19157446 2L 19156906 19157446 CG10719 brat transcript overlap 1.84591195 19157296 3.468409586 19157296 6.625 19157296 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19158479_19158977 2L 19158479 19158977 CG10719 brat transcript overlap 1.401467505 19158807 2.160130719 19158571 3.798611111 19158571 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_19160543_19161270 2L 19160543 19161270 CG10719 brat transcript overlap 3.077568134 19160642 2.114379085 19160642 2.872222222 19160880 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2L_19176986_19177452 2L 19176986 19177452 CG17568 CG17568 transcript overlap 1.048218029 19177352 2.966230937 19177096 3.3 19177352 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2L_19200905_19201460 2L 19200905 19201460 CG17348 drl transcript overlap 1.289308176 19201015 2.850762527 19201015 3.977777778 19201015 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 0 0 0 0 0 0 0 0 0 2L_19215521_19216607 2L 19215521 19216607 CG17348 drl 29246 1.408805031 19215884 5.061002179 19216159 8.390277778 19216159 0 1 1 0 0 0 5 3 2 2 2 1 1 1 1 1 1 0 2 0 0 0 0 0 2L_19318534_19319091 2L 19318534 19319091 CG10750 CG10750 22299 1.352201258 19318644 3.410675381 19318644 3.834722222 19318644 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2L_19322645_19323205 2L 19322645 19323205 CG10750 CG10750 26410 2.756813417 19322755 5.74291939 19322755 8.254166667 19322755 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_19329820_19330350 2L 19329820 19330350 CG17559 dnt 28803 2.374213836 19330194 2.65577342 19330194 3.316666667 19329928 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19333384_19334717 2L 19333384 19334717 CG17559 dnt 24436 3.153039832 19334299 6.08496732 19334050 9.191666667 19334050 1 0 1 0 0 0 5 3 2 1 1 0 1 1 1 0 0 0 2 0 0 0 0 0 2L_19485836_19486178 2L 19485836 19486178 CG10194 CG10194 TSS overlap 1.880503145 19486016 2.252723312 19486016 3.213888889 19486016 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_19503996_19504725 2L 19503996 19504725 CG10188 CG10188 TSS overlap 2.939203354 19504623 3.71459695 19504106 6.1625 19504343 1 0 1 0 0 0 2 0 0 0 0 0 2 2 1 1 0 0 3 1 1 0 0 0 2L_19572083_19572653 2L 19572083 19572653 CG10334 spi transcript overlap 2.201257862 19572471 2.366013072 19572193 3.533333333 19572471 0 0 0 0 0 0 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19639429_19639703 2L 19639429 19639703 CG10443 Lar transcript overlap 1.899371069 19639536 2.736383442 19639536 2.272222222 19639536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_19643619_19643961 2L 19643619 19643961 CG10443 Lar transcript overlap 1.323899371 19643707 3.735294118 19643795 4.680555556 19643795 0 0 0 0 0 0 3 3 1 1 0 0 3 1 1 1 0 0 0 0 0 0 0 0 2L_19807969_19808510 2L 19807969 19808510 CR32881 snRNA:U5:38ABa TSS overlap 0.932914046 19808352 3.446623094 19808352 1.756944444 19808352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_19811161_19812738 2L 19811161 19812738 CR32882 CR32880 snRNA:U2:38ABa snRNA:U5:38ABb TSS overlap 2.192872117 19811584 1.927015251 19811864 3.773611111 19811584 0 0 0 0 0 0 2 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2L_19815623_19816192 2L 19815623 19816192 CR32880 snRNA:U5:38ABb 3280 1.363731656 19816022 4.64379085 19815742 7.7875 19816022 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 2L_19862603_19863138 2L 19862603 19863138 CG33316 CG33316 transcript overlap 1.742138365 19862711 2.74291939 19862968 4.433333333 19862711 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_19933923_19934203 2L 19933923 19934203 CG33316 CG33316 transcript overlap 0.919287212 19934033 2.446623094 19934033 3.718055556 19934033 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_19947602_19948086 2L 19947602 19948086 CG10662 CG10662 2238 1.542976939 19947923 5.887799564 19947700 4.606944444 19947700 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2L_20026593_20026850 2L 20026593 20026850 CG13968 sNPF transcript overlap 1.039832285 20026703 1.997821351 20026703 2.788888889 20026703 0 0 0 0 0 0 2 2 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 2L_20124023_20124583 2L 20124023 20124583 CG10651 CG10651 6247 2.008385744 20124413 5.049019608 20124413 6.998611111 20124413 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_20281449_20281946 2L 20281449 20281946 CG12617 CG12617 354 2.113207547 20281555 3.027233115 20281779 4.902777778 20281555 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_20464172_20464980 2L 20464172 20464980 CR32958 mir-1 10109 1.480083857 20464535 4.423747277 20464535 4.9625 20464535 0 0 0 0 0 1 "Biemar et al., 2005" 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_20468594_20469458 2L 20468594 20469458 CR32958 mir-1 5631 2.024109015 20468984 12.58932462 20468984 11.67222222 20468984 1 0 1 1 0 1 "Biemar et al., 2005" 3 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 2L_20473425_20476067 2L 20473425 20476067 CR32958 mir-1 TSS overlap 7.963312369 20475901 18.85185185 20473789 14.16111111 20473789 1 0 1 0 0 1 "Biemar et al., 2005" 3 0 0 0 0 0 7 0 0 0 0 0 2 0 0 0 0 0 2L_20481988_20482424 2L 20481988 20482424 CG34007 CG34007 275 2.520964361 20482098 2.82788671 20482098 3.045833333 20482098 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_20756026_20756566 2L 20756026 20756566 CG1759 cad 1762 1.36163522 20756398 2.974945534 20756398 4.455555556 20756398 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2L_20757727_20758301 2L 20757727 20758301 CG1759 cad 27 2.874213836 20758192 3.159041394 20758070 4.747222222 20758070 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_20765933_20766465 2L 20765933 20766465 CG1759 cad transcript overlap 1.56918239 20766323 4.227668845 20766043 6.745833333 20766043 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_20956296_20957091 2L 20956296 20957091 CG9266 CG9266 TSS overlap 1.514675052 20956955 2.468409586 20956534 3.141666667 20956675 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2L_21021770_21022301 2L 21021770 21022301 CG1762 betaInt-nu 18124 1.670859539 21022131 3.918300654 21021879 3.602777778 21021879 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2L_21023629_21023903 2L 21023629 21023903 CG1762 betaInt-nu 16522 1.677148847 21023739 2.944444444 21023739 2.790277778 21023739 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 2L_21089926_21090976 2L 21089926 21090976 CG12050 CG9257 CG12050 CG9257 TSS overlap 4.417190776 21090526 8.565359477 21090526 14.22361111 21090526 1 0 1 0 0 0 2 1 1 1 0 0 2 2 1 1 0 0 1 0 0 0 0 0 2L_21092016_21092614 2L 21092016 21092614 CG9256 Nhe2 TSS overlap 2.174004193 21092166 2.037037037 21092166 2.820833333 21092166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 2L_21150347_21150681 2L 21150347 21150681 CG9247 CG9247 TSS overlap 2.313417191 21150582 4.087145969 21150582 5.541666667 21150582 1 0 1 0 0 0 3 2 1 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2L_21225246_21225992 2L 21225246 21225992 CG8676 Hr39 transcript overlap 2.019916143 21225554 6.859477124 21225554 11.61944444 21225554 1 0 1 0 0 0 4 3 2 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2L_21406221_21406485 2L 21406221 21406485 CG33910 CR33802 His2B:CG33910 His-Psi:CR33802 TSS overlap 33.23319756 21406287 1.385 21406287 2.168407311 21406287 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21407160_21407937 2L 21407160 21407937 CG33803 CG33909 His3:CG33803 His4:CG33909 TSS overlap 53.32077393 21407789 1.854 21407509 2.920365535 21407509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21411228_21411874 2L 21411228 21411874 CG17949 CG31618 CR33727 His2B:CG17949 His2A:CG31618 snmRNA:430:CR33727 TSS overlap 43.8808554 21411432 2.495 21411432 2.810704961 21411432 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21412275_21412716 2L 21412275 21412716 CG31611 His4:CG31611 transcript overlap 56.83095723 21412485 2.111 21412619 2.847258486 21412485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21416087_21416367 2L 21416087 21416367 CG33908 His2B:CG33908 TSS overlap 27.50101833 21416197 1.708 21416197 1.821148825 21416197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21421083_21421902 2L 21421083 21421902 CG33906 CR33728 CG33808 His2B:CG33906 snmRNA:430:CR33728 His2A:CG33808 TSS overlap 50.6191446 21421750 2.101 21421193 2.553524804 21421193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21422446_21423108 2L 21422446 21423108 CG33905 CG33809 His4:CG33905 His3:CG33809 TSS overlap 39.89205703 21422960 2.189 21422960 2.624020888 21422557 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21426249_21426823 2L 21426249 21426823 CG33904 CR33811 His2B:CG33904 His-Psi:CR33811 TSS overlap 54.15376782 21426653 2.545 21426653 2.681462141 21426653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21427383_21427995 2L 21427383 21427995 CG33903 CG33812 His4:CG33903 His3:CG33812 TSS overlap 54.88391039 21427493 2.645 21427493 2.778067885 21427493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21440557_21441071 2L 21440557 21441071 CG33814 His2A:CG33814 transcript overlap 48.32281059 21440629 2.43 21440629 3.253263708 21440629 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21441472_21441985 2L 21441472 21441985 CG33815 CG33901 His3:CG33815 His4:CG33901 TSS overlap 40.01731161 21441549 2.011 21441549 2.625326371 21441549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21445580_21446052 2L 21445580 21446052 CG33817 CR33730 CG33900 His2A:CG33817 snmRNA:430:CR33730 His2B:CG33900 TSS overlap 44.99083503 21445620 2.128 21445620 2.712793734 21445900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21446596_21447000 2L 21446596 21447000 CG33899 His4:CG33899 transcript overlap 48.32077393 21446707 2.268 21446707 3.64229765 21446707 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21450501_21451112 2L 21450501 21451112 CG33820 CG33898 CR33731 His2A:CG33820 His2B:CG33898 snmRNA:430:CR33731 TSS overlap 54.901222 21450960 2.053 21450540 2.194516971 21450680 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21451656_21452317 2L 21451656 21452317 CG33821 CG33897 His3:CG33821 His4:CG33897 TSS overlap 36.99287169 21452170 1.945 21452170 2.541775457 21451767 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21455557_21456128 2L 21455557 21456128 CG33896 CR33732 CG33823 His2B:CG33896 snmRNA:430:CR33732 His2A:CG33823 TSS overlap 41.03767821 21456026 1.948 21456026 2.94386423 21455746 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21456839_21457364 2L 21456839 21457364 CG33895 CG33824 His4:CG33895 His3:CG33824 TSS overlap 34.33503055 21457221 2.076 21456942 2.293733681 21456942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21460736_21461171 2L 21460736 21461171 CG33894 CR33733 CG33826 His2B:CG33894 snmRNA:430:CR33733 His2A:CG33826 TSS overlap 37.59063136 21460789 2.127 21460789 2.917754569 21460789 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21461882_21462407 2L 21461882 21462407 CG33827 CG33893 His3:CG33827 His4:CG33893 TSS overlap 28.7311609 21462264 2.083 21461985 2.492167102 21461985 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21465238_21466214 2L 21465238 21466214 CG33829 CR33734 CG33892 His2A:CG33829 snmRNA:430:CR33734 His2B:CG33892 TSS overlap 47.46334012 21465279 2.325 21465832 3.280678851 21465832 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21466652_21467197 2L 21466652 21467197 CG33891 His4:CG33891 6 28.53971487 21466762 2.061 21467028 2.489556136 21467028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21470492_21471257 2L 21470492 21471257 CG33832 CR33735 CG33890 His2A:CG33832 snmRNA:430:CR33735 His2B:CG33890 TSS overlap 48.98472505 21470875 2.353 21471155 2.5 21471155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21471695_21472237 2L 21471695 21472237 CG33889 His4:CG33889 11 34.37780041 21471805 2.145 21471805 2.25848564 21471805 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21475335_21476173 2L 21475335 21476173 CR33736 CG33835 CG33888 snmRNA:430:CR33736 His2A:CG33835 His2B:CG33888 TSS overlap 39.67922607 21476003 2.161 21475726 2.490861619 21476003 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21476979_21477181 2L 21476979 21477181 CG33887 His4:CG33887 transcript overlap 32.50712831 21477090 1.588 21477090 2.91383812 21477090 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21481008_21481218 2L 21481008 21481218 CG33886 CG33838 CR33737 His2B:CG33886 His2A:CG33838 snmRNA:430:CR33737 TSS overlap 37.42668024 21481048 1.728 21481048 2.002610966 21481048 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21482024_21482692 2L 21482024 21482692 CG33885 CG33839 His4:CG33885 His3:CG33839 TSS overlap 72.13136456 21482536 2.18 21482536 2.810704961 21482135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21485706_21486525 2L 21485706 21486525 CG33841 CG33884 CR33738 His2A:CG33841 His2B:CG33884 snmRNA:430:CR33738 TSS overlap 63.07637475 21486373 2.043 21485816 2.591383812 21486093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21487069_21487729 2L 21487069 21487729 CG33842 CG33883 His3:CG33842 His4:CG33883 TSS overlap 37.81771894 21487581 1.848 21487180 2.678851175 21487180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2L_21490800_21491558 2L 21490800 21491558 CR33739 CG33882 CG33844 snmRNA:430:CR33739 His2B:CG33882 His2A:CG33844 TSS overlap 68.4185336 21491187 2.352 21491467 2.733681462 21491467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21491987_21492791 2L 21491987 21492791 CG33845 CG33881 His3:CG33845 His4:CG33881 TSS overlap 56.08350305 21492636 1.967 21492363 2.903394256 21492363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21495523_21496012 2L 21495523 21496012 CG33880 His2B:CG33880 155 34.11405295 21495634 2.028 21495634 2.010443864 21495634 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21496151_21496623 2L 21496151 21496623 CR33740 CG33847 CG33880 snmRNA:430:CR33740 His2A:CG33847 His2B:CG33880 TSS overlap 42.81873727 21496471 2.162 21496471 2.300261097 21496471 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21497167_21497835 2L 21497167 21497835 CG33848 CG33879 His3:CG33848 His4:CG33879 TSS overlap 35.39307536 21497679 2.065 21497679 2.563968668 21497400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21501195_21501405 2L 21501195 21501405 CG33850 CG33878 CR33741 His2A:CG33850 His2B:CG33878 snmRNA:430:CR33741 TSS overlap 40.73930754 21501235 1.892 21501235 1.889033943 21501235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21502211_21502879 2L 21502211 21502879 CG33851 CG33877 His3:CG33851 His4:CG33877 TSS overlap 50.54276986 21502322 2.325 21502322 3.488250653 21502322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21506101_21506240 2L 21506101 21506240 CG33876 His2B:CG33876 transcript overlap 18.78513238 21506140 1.496 21506140 1.544386423 21506140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21507256_21507917 2L 21507256 21507917 CG33854 CG33875 His3:CG33854 His4:CG33875 TSS overlap 37.48676171 21507367 1.779 21507367 2.577023499 21507367 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21510736_21511555 2L 21510736 21511555 CR33743 CG33856 CG33874 snmRNA:430:CR33743 His2A:CG33856 His2B:CG33874 TSS overlap 46.51832994 21511123 2.033 21511123 2.553524804 21511123 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21512099_21512502 2L 21512099 21512502 CG33873 His4:CG33873 transcript overlap 50.6191446 21512210 2.21 21512210 2.946475196 21512210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21515787_21516398 2L 21515787 21516398 CG33872 CG33859 CR33744 His2B:CG33872 His2A:CG33859 snmRNA:430:CR33744 TSS overlap 45.59063136 21516246 2.116 21515966 2.719321149 21515966 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21516942_21517603 2L 21516942 21517603 CG33871 CG33860 His4:CG33871 His3:CG33860 TSS overlap 37.02953157 21517455 1.975 21517455 2.770234987 21517053 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21520769_21521241 2L 21520769 21521241 CG33870 CR33745 CG33862 His2B:CG33870 snmRNA:430:CR33745 His2A:CG33862 TSS overlap 47.39816701 21520809 2.273 21520809 2.332898172 21521089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21521785_21522453 2L 21521785 21522453 CG33869 CG33863 His4:CG33869 His3:CG33863 TSS overlap 45.90733198 21522297 2.15 21521896 2.889033943 21521896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2L_21525557_21526353 2L 21525557 21526353 CG33865 CG33868 CR33746 His2A:CG33865 His2B:CG33868 snmRNA:430:CR33746 TSS overlap 56.94602851 21525935 2.12 21526215 2.770234987 21525935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21606293_21606913 2L 21606293 21606913 CG2201 CG2201 transcript overlap 1.643584521 21606465 3.468 21606330 5.148825065 21606330 0 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 2L_21616961_21617361 2L 21616961 21617361 CG2207 Df31 transcript overlap 2.554989817 21616964 1.991 21616964 1.906005222 21616964 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21620567_21621644 2L 21620567 21621644 CG1506 Ac3 transcript overlap 1.116089613 21621474 2.139 21621474 2.506527415 21620914 0 0 0 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 1 0 0 0 0 0 2L_21736505_21736766 2L 21736505 21736766 CG11628 Grp1 transcript overlap 2.132382892 21736597 2.749 21736597 2.412532637 21736597 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 2L_21797665_21797945 2L 21797665 21797945 CG31612 CG31612 14627 1.00101833 21797775 2.381 21797775 1.754569191 21797775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21831058_21831334 2L 21831058 21831334 CG1374 tsh 14870 1.190427699 21831167 2.334 21831167 2.101827676 21831167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21834858_21835698 2L 21834858 21835698 CG1374 tsh 18670 1.599796334 21835248 4.315 21835248 5.270234987 21835248 0 1 1 0 0 0 3 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2L_21836241_21836755 2L 21836241 21836755 CG1374 tsh 20053 1.358452138 21836615 1.904 21836335 3.054830287 21836615 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2L_21840612_21841400 2L 21840612 21841400 CG1374 tsh 24424 1.652749491 21840980 3.813 21841259 3.922976501 21841259 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21848032_21848773 2L 21848032 21848773 CG1374 tsh 31844 1.433808554 21848343 4.099 21848343 7.176240209 21848343 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2L_21851003_21851546 2L 21851003 21851546 CG11629 CG11629 34308 1.953156823 21851377 2.511 21851113 3.740208877 21851113 0 0 0 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 2 2 0 0 0 0 2L_21856577_21857100 2L 21856577 21857100 CG11629 CG11629 28754 1.551934827 21856658 2.451 21856938 2.570496084 21856938 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2L_21864231_21865404 2L 21864231 21865404 CG11629 CG11629 20450 1.196537678 21864621 2.649 21864935 4.937336815 21864935 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 2L_21946185_21946464 2L 21946185 21946464 CG2528 CG2528 34062 1.516293279 21946294 1.321 21946294 2.766318538 21946294 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2L_22006191_22006880 2L 22006191 22006880 CR33987 CR33987 29 1.547861507 22006780 3.923 22006526 6.263707572 22006526 0 1 1 0 0 0 2 1 1 1 1 1 3 1 1 1 1 1 0 0 0 0 0 0 2L_22138820_22139448 2L 22138820 22139448 CG6448 CG6448 transcript overlap 1.717922607 22138999 2.833 22138999 4.960835509 22139278 0 0 0 0 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2R_1220753_1221313 2R 1220753 1221313 CG8376 ap transcript overlap 1.362525458 1220863 2.168 1221143 3.048302872 1221143 0 0 0 0 0 0 4 1 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 2R_1365604_1365879 2R 1365604 1365879 CG14469 dpr12 transcript overlap 0.823828921 1365709 5.226 1365709 6.838120104 1365709 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_1407942_1408729 2R 1407942 1408729 CG12551 CG12551 19592 0.956211813 1408279 9.748 1408279 15.78720627 1408279 0 1 1 0 0 0 6 0 0 0 0 0 6 0 0 0 0 0 1 0 0 0 0 0 2R_1442663_1442943 2R 1442663 1442943 CG14470 CG14470 10418 1.349287169 1442773 1.65 1442773 1.866840731 1442773 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_1444790_1446352 2R 1444790 1446352 CG14470 CG14470 12545 2.00305499 1445919 4.97 1445919 6.742819843 1445641 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2R_1543676_1543929 2R 1543676 1543929 CG33131 SCAP 782 1.916496945 1543760 2.244 1543760 2.690600522 1543760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_1625968_1626480 2R 1625968 1626480 CG1765 EcR transcript overlap 1.146639511 1626091 4.442 1626091 5.938642298 1626091 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_1628034_1628582 2R 1628034 1628582 CG1765 EcR transcript overlap 1.536659878 1628133 1.987 1628133 3.016971279 1628133 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_1629140_1630168 2R 1629140 1630168 CG1765 EcR transcript overlap 3.483706721 1629519 7.437 1629519 10.07441253 1629519 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_1632786_1633567 2R 1632786 1633567 CG1765 EcR transcript overlap 1.368635438 1633437 2.292 1633157 5.238903394 1633157 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2R_1640158_1640942 2R 1640158 1640942 CG1765 EcR transcript overlap 1.528513238 1640518 2.274 1640518 2.15535248 1640518 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_1641466_1642154 2R 1641466 1642154 CG1765 EcR transcript overlap 3.591649695 1641576 2.357 1641776 2.818537859 1641776 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_1701326_1704550 2R 1701326 1704550 CG11212 Ptr TSS overlap 2.315682281 1701685 6.843 1703054 12.35248042 1703054 1 0 1 0 0 0 9 4 4 2 0 0 8 3 1 0 0 0 5 0 0 0 0 0 2R_2026318_2026863 2R 2026318 2026863 CG9397 1.28 transcript overlap 1.512219959 2026693 4.765 2026428 4.664490862 2026428 0 0 0 0 0 0 3 2 2 2 1 0 2 1 1 1 0 0 0 0 0 0 0 0 2R_2028401_2028905 2R 2028401 2028905 CG9397 1.28 transcript overlap 1.311608961 2028735 3.02 2028507 5.591383812 2028735 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2030245_2030792 2R 2030245 2030792 CG9397 1.28 transcript overlap 0.727087576 2030355 2.05 2030622 3.152741514 2030622 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_2039634_2040192 2R 2039634 2040192 CG9397 1.28 transcript overlap 1.224032587 2039744 2.214 2039744 3.409921671 2040022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_2084615_2086226 2R 2084615 2086226 CG15233 CG15233 26565 2.459266802 2085482 18.873 2085482 30.09660574 2085482 1 0 1 0 0 0 1 0 0 0 0 0 3 2 2 2 2 2 2 2 0 0 0 0 2R_2089824_2090384 2R 2089824 2090384 CG15233 CG15233 22407 1.83503055 2089934 2.254 2089934 3.114882507 2090214 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_2097408_2098239 2R 2097408 2098239 CG15233 CG15233 14552 1.356415479 2097797 5.95 2097797 11.56266319 2097797 0 1 1 0 0 0 2 2 1 1 0 0 3 3 3 2 1 0 1 1 1 0 0 0 2R_2114777_2115055 2R 2114777 2115055 CG15233 CG15233 1986 1.16496945 2114887 1.747 2114887 2.983028721 2114887 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 1 0 0 0 0 0 2R_2122253_2122617 2R 2122253 2122617 CG15234 CG15234 transcript overlap 1.99694501 2122289 1.954 2122289 2.399477807 2122289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_2124399_2125164 2R 2124399 2125164 CG9403 jing transcript overlap 3.32790224 2124840 3.704 2124840 3.189295039 2124473 0 0 0 0 0 0 2 1 1 0 0 0 4 2 2 0 0 0 0 0 0 0 0 0 2R_2141649_2142439 2R 2141649 2142439 CG3161 Vha16 transcript overlap 1.842158859 2142269 2.816 2141722 3.365535248 2141722 0 0 0 0 0 0 2 1 1 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 2R_2277868_2278144 2R 2277868 2278144 CG3427 Epac transcript overlap 1.246435845 2277978 2.827 2277978 4.035248042 2277978 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2321885_2322442 2R 2321885 2322442 CG3450 l(2)k03203 TSS overlap 2.089613035 2322275 3.066 2322135 2.762402089 2322135 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_2325703_2326223 2R 2325703 2326223 CG3287 CG3287 transcript overlap 1.846232179 2325788 2.735 2325788 5.040469974 2325788 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2348356_2348887 2R 2348356 2348887 CG15236 CG15236 transcript overlap 1.022403259 2348743 2.753 2348466 3.483028721 2348466 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2368820_2369085 2R 2368820 2369085 CG9446 coro 15497 1.17209776 2368930 1.674 2368930 3.392950392 2368930 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2384310_2384505 2R 2384310 2384505 CG9446 coro transcript overlap 2.989816701 2384419 1.801 2384419 0.936031332 2384419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2488248_2488497 2R 2488248 2488497 CG3572 vimar transcript overlap 0.934826884 2488358 1.971 2488358 2.917754569 2488358 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2492078_2492509 2R 2492078 2492509 CG3572 vimar transcript overlap 1.077393075 2492328 3.421 2492328 4.609660574 2492328 0 0 0 0 0 0 2 2 2 1 0 0 3 2 1 1 0 0 0 0 0 0 0 0 2R_2517348_2517628 2R 2517348 2517628 CG30160 CG30160 transcript overlap 1.393075356 2517458 2.151 2517458 2.677545692 2517458 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_2617623_2618609 2R 2617623 2618609 CG12833 esn transcript overlap 1.696537678 2618286 8.824 2618286 14.09660574 2618286 0 1 1 0 0 0 3 3 3 1 1 1 2 1 1 1 1 0 1 0 0 0 0 0 2R_2678132_2678608 2R 2678132 2678608 CG11084 pk transcript overlap 1.1598778 2678438 2.237 2678438 2.233681462 2678438 0 0 0 0 0 0 2 2 2 2 2 1 2 2 2 2 2 1 0 0 0 0 0 0 2R_2698825_2699349 2R 2698825 2699349 CG11084 pk transcript overlap 0.887983707 2698935 3.18 2699057 6.404699739 2699057 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_2755973_2758081 2R 2755973 2758081 CG1851 Ady43A TSS overlap 1.49490835 2756338 2.759 2757158 1.509138381 2756083 0 0 0 1 0 1 "Markstein et al., 2004" 1 0 0 0 0 0 2 1 1 0 0 0 3 1 1 0 0 0 2R_2758567_2759621 2R 2758567 2759621 CG1851 Ady43A 996 2.210794297 2759451 2.759 2758905 1.407310705 2758645 0 0 0 0 0 1 "Markstein et al., 2004" 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2R_2891089_2891367 2R 2891089 2891367 CG17800 Dscam transcript overlap 1.231160896 2891199 2.884 2891199 2.257180157 2891199 0 0 0 0 0 1 "Stathopoulos et al., 2002 " 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2891911_2894049 2R 2891911 2894049 CG17800 Dscam TSS overlap 7.255600815 2892554 17.784 2892554 27.79634465 2892554 1 0 1 0 0 1 "Stathopoulos et al., 2002 " 3 1 1 1 1 0 3 2 1 1 1 0 3 0 0 0 0 0 2R_2907433_2907963 2R 2907433 2907963 CG1707 CG1707 TSS overlap 2.248472505 2907543 2.885 2907543 4.496083551 2907683 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 1 1 0 2 0 0 0 0 0 2R_2918770_2919507 2R 2918770 2919507 CG11166 CG11166 transcript overlap 1.595723014 2919405 2.467 2918850 5.618798956 2919130 0 1 1 0 0 0 5 3 2 2 2 0 1 1 1 1 1 0 0 0 0 0 0 0 2R_2930064_2931183 2R 2930064 2931183 CG11121 so TSS overlap 1.809572301 2930395 8.854 2930483 18.11096606 2930483 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_2938497_2938777 2R 2938497 2938777 CG11121 so transcript overlap 1.132382892 2938607 2.408 2938607 1.684073107 2938607 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 2R_2959239_2959714 2R 2959239 2959714 CG30502 CG30502 transcript overlap 1.107942974 2959264 2.549 2959544 4.567885117 2959544 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_2978918_2979472 2R 2978918 2979472 CG11140 Aldh-III transcript overlap 1.276985743 2979308 3.236 2979308 4.745430809 2979308 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_2989343_2990110 2R 2989343 2990110 CG11140 Aldh-III 368 4.798370672 2989697 2.13 2989697 3.336814621 2989697 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_2993909_2994749 2R 2993909 2994749 CG1624 dpld transcript overlap 2.988798371 2993987 1.766 2994532 2.729765013 2993987 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_2994924_2995165 2R 2994924 2995165 CG1624 dpld transcript overlap 1.353360489 2994995 1.02 2994995 1.800261097 2994995 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_2995445_2996807 2R 2995445 2996807 CG1624 dpld transcript overlap 3.011201629 2996394 2.193 2996114 4.328981723 2996114 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_2997613_2998666 2R 2997613 2998666 CG1624 dpld transcript overlap 2.688391039 2998519 2.794 2998239 4.445169713 2998239 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2R_3002159_3002986 2R 3002159 3002986 CG1624 dpld 483 1.899185336 3002537 9.737 3002537 14.02088773 3002537 0 1 1 0 0 0 3 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3042538_3042812 2R 3042538 3042812 CG1600 CG1600 transcript overlap 4.197556008 3042648 3.123 3042648 2.680156658 3042648 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_3050209_3050990 2R 3050209 3050990 CG1598 CG1598 transcript overlap 1.250509165 3050596 3.687 3050596 6.267624021 3050596 0 1 1 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3104436_3104995 2R 3104436 3104995 CG2092 scra transcript overlap 1.427698574 3104545 3.254 3104825 5.7845953 3104825 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_3135262_3135746 2R 3135262 3135746 CG30492 CG30492 transcript overlap 1.094704684 3135577 4.187 3135577 5.134464752 3135577 0 1 1 0 0 0 3 3 2 2 0 0 2 2 2 2 0 0 0 0 0 0 0 0 2R_3203346_3203624 2R 3203346 3203624 CG1399 CG1399 4449 1.443991853 3203454 1.917 3203454 2.951697128 3203454 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 2R_3340840_3341401 2R 3340840 3341401 CG18853 CG18853 TSS overlap 2.596741344 3340870 2.769 3341231 3.446475196 3341231 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3343853_3344586 2R 3343853 3344586 CG12822 CG12822 TSS overlap 2.406313646 3343860 2.302 3344140 4.821148825 3344140 0 0 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_3413672_3414229 2R 3413672 3414229 CG30377 CG30377 transcript overlap 1.547861507 3414080 3.053 3413744 5.024804178 3413744 0 1 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_3459491_3460051 2R 3459491 3460051 CG14764 CG14764 transcript overlap 2.8401222 3459881 4.361 3459881 6.839425587 3459881 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3471221_3471878 2R 3471221 3471878 CG2915 CG2915 TSS overlap 3.691446029 3471809 2.572 3471685 3.014360313 3471685 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_3473162_3473897 2R 3473162 3473897 CG2916 38965 TSS overlap 3.811608961 3473737 2.932 3473272 4.171018277 3473519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_3530643_3531392 2R 3530643 3531392 CG14762 CG14762 5076 1.546843177 3530678 2.458 3530958 4.254569191 3530958 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_3542719_3542971 2R 3542719 3542971 CG18455 Optix 475 1.416496945 3542815 3.206 3542815 2.656657963 3542815 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_3579975_3580805 2R 3579975 3580805 CG8715 lig transcript overlap 2.356415479 3580085 2.369 3580085 2.929503916 3580085 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_3605599_3606159 2R 3605599 3606159 CG8713 CG8713 transcript overlap 1.202647658 3605989 2.882 3605989 4.01305483 3605989 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_3633841_3634346 2R 3633841 3634346 CG30372 CG30372 transcript overlap 1.686354379 3633949 2.046 3633949 3.656657963 3633949 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_3641382_3641912 2R 3641382 3641912 CG11508 CG11508 transcript overlap 1.300407332 3641769 3.51 3641492 3.334203655 3641492 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_3657630_3658008 2R 3657630 3658008 CG8709 CG8709 TSS overlap 1.565173116 3657776 2.34 3657866 3.428198433 3657866 0 0 0 0 0 0 2 2 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_3666821_3667065 2R 3666821 3667065 CG11546 l(2)02045 transcript overlap 1.535641548 3666931 1.395 3666931 2.990861619 3666931 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3738312_3738592 2R 3738312 3738592 CG8704 dpn 5548 1.483706721 3738422 1.961 3738422 2.603133159 3738422 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_3757667_3758424 2R 3757667 3758424 CG14760 CG14760 7645 2.015274949 3758230 6.021 3758230 9.770234987 3758230 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2R_3759727_3760244 2R 3759727 3760244 CG14760 CG14760 5825 1.424643585 3760080 2.967 3760080 3.416449086 3760080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3761029_3761308 2R 3761029 3761308 CG14760 CG14760 4761 1.236252546 3761139 1.875 3761139 2.847258486 3761139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_3761868_3762686 2R 3761868 3762686 CG14760 CG14760 3383 0.961303462 3761978 2.271 3762238 3.193211488 3762238 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_3872813_3873948 2R 3872813 3873948 CG30365 CG30365 TSS overlap 2.49389002 3873203 7.971 3873203 8.891644909 3873429 1 0 1 0 0 0 2 2 1 1 0 0 2 2 2 1 0 0 3 1 1 1 0 0 2R_4119468_4119748 2R 4119468 4119748 CG8643 rgr transcript overlap 1.750509165 4119578 2.443 4119578 2.154046997 4119578 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_4142750_4143544 2R 4142750 4143544 CG8635 CG8635 transcript overlap 1.218940937 4143140 3.543 4143140 5.339425587 4143140 0 1 1 0 0 0 2 2 2 1 0 0 1 1 1 1 0 0 3 1 1 1 1 1 2R_4148249_4149352 2R 4148249 4149352 CG8635 CG8635 4474 1.489816701 4148358 2.732 4149182 2.75848564 4149182 0 0 0 0 0 0 3 3 3 1 1 0 3 2 1 1 1 0 2 1 1 1 0 0 2R_4151652_4151931 2R 4151652 4151931 CG8635 CG8635 7877 1.619144603 4151762 3.298 4151762 2.468668407 4151762 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_4154841_4155926 2R 4154841 4155926 CG2411 ptc 5522 1.723014257 4155482 4.681 4155482 7.171018277 4155482 0 1 1 0 0 0 5 1 1 1 0 0 4 1 1 1 1 1 2 0 0 0 0 0 2R_4161409_4161901 2R 4161409 4161901 CG2411 ptc TSS overlap 2.391038697 4161729 2.64 4161729 2.890339426 4161729 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2R_4166647_4168366 2R 4166647 4168366 CG2411 ptc transcript overlap 2.193482688 4166751 2.939 4166751 4.432114883 4166751 0 0 0 0 0 0 4 4 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_4169474_4170261 2R 4169474 4170261 CG2411 ptc transcript overlap 1.781059063 4169817 4.34 4169817 7.860313316 4169817 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_4231367_4231647 2R 4231367 4231647 CG14767 CG14767 transcript overlap 1.66293279 4231477 2.534 4231477 4.22845953 4231477 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 2R_4234988_4235376 2R 4234988 4235376 CG14767 CG14767 transcript overlap 1.244399185 4235097 2.452 4235097 4.377284595 4235097 0 0 0 0 0 0 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_4287223_4287435 2R 4287223 4287435 CG8746 CG8746 17011 1.306517312 4287298 1.903 4287298 3.203655352 4287298 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_4311927_4312481 2R 4311927 4312481 CG33141 sns transcript overlap 3.657841141 4312312 3.996 4312312 3.039164491 4312312 0 0 0 0 0 0 1 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 2R_4313574_4314370 2R 4313574 4314370 CG33141 sns transcript overlap 2.896130346 4313921 12.452 4313921 17.5 4313921 1 0 1 0 0 0 2 1 1 0 0 0 5 1 0 0 0 0 2 0 0 0 0 0 2R_4374119_4374922 2R 4374119 4374922 CG10844 Rya-r44F transcript overlap 3.650712831 4374489 5.158 4374489 7.596605744 4374489 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_4426216_4426560 2R 4426216 4426560 CG11770 lin TSS overlap 3.848268839 4426390 2.014 4426390 2.921671018 4426390 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_4429015_4429294 2R 4429015 4429294 CG11770 lin transcript overlap 0.855397149 4429125 2.687 4429125 4.422976501 4429125 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_4496636_4497192 2R 4496636 4497192 CG8213 CG8213 transcript overlap 1.32688391 4497026 1.515 4497026 2.766318538 4497026 0 0 0 0 0 0 3 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 2R_4518374_4518942 2R 4518374 4518942 CG8172 CG8172 6379 2.576374745 4518757 2.677 4518757 3.308093995 4518757 0 0 0 0 0 0 2 2 1 1 0 0 2 1 1 1 0 0 2 0 0 0 0 0 2R_4650241_4650982 2R 4650241 4650982 CG8788 CG8788 TSS overlap 2.118126273 4650417 5.04 4650417 3.458224543 4650417 1 0 1 0 0 0 1 0 0 0 0 0 5 1 0 0 0 0 1 1 0 0 0 0 2R_4694785_4695205 2R 4694785 4695205 CG8024 ltd transcript overlap 1.447046843 4695097 1.715 4694895 3.148825065 4694895 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_4742802_4743566 2R 4742802 4743566 CG2040 hig transcript overlap 1.442973523 4743396 2.675 4743142 4.03002611 4743142 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_4790687_4791247 2R 4790687 4791247 CG2049 Pkn transcript overlap 1.429735234 4791077 2.316 4791077 3.033942559 4790797 0 0 0 0 0 0 2 2 2 1 0 0 2 1 0 0 0 0 2 1 0 0 0 0 2R_4931310_4932731 2R 4931310 4932731 CG13955 CG13955 2704 3.877800407 4931700 10.423 4931700 15.51174935 4931700 1 0 1 0 0 0 3 0 0 0 0 0 4 1 0 0 0 0 2 0 0 0 0 0 2R_4953740_4954295 2R 4953740 4954295 CG11804 ced-6 367 1.941955193 4953850 2.461 4954128 4.609660574 4954128 0 0 0 0 0 0 3 2 1 1 0 0 5 5 4 2 0 0 2 2 1 1 1 1 2R_5032643_5033158 2R 5032643 5033158 CG12932 CG12932 1593 0.986761711 5032767 2.242 5032767 3.848563969 5032767 0 0 0 0 0 0 2 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 2R_5105858_5106068 2R 5105858 5106068 CG1902 CG1902 TSS overlap 1.682281059 5105898 2.06 5105898 2.55613577 5105898 0 0 0 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_5206470_5207001 2R 5206470 5207001 CG1782 Uba1 1329 1.575356415 5206579 2.821 5206579 5.194516971 5206579 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2R_5215500_5215776 2R 5215500 5215776 CG30002 CG30002 420 0.750509165 5215610 1.819 5215610 3.110966057 5215610 0 0 0 0 0 0 2 2 1 1 0 0 2 2 2 2 0 0 0 0 0 0 0 0 2R_5226201_5226688 2R 5226201 5226688 CG1772 dap transcript overlap 2.051934827 5226550 4.717 5226550 6.809399478 5226550 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_5353517_5353797 2R 5353517 5353797 CG1599 CG1599 transcript overlap 0.99898167 5353627 2.766 5353627 4.868146214 5353627 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_5426653_5427060 2R 5426653 5427060 CG1429 Mef2 transcript overlap 3.425661914 5426763 2.028 5426763 2.983028721 5426977 0 0 0 0 0 1 "Taylor et al., 1995" 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_5443138_5443816 2R 5443138 5443816 CG1429 Mef2 transcript overlap 1.923625255 5443646 6.147 5443646 3.763707572 5443646 0 1 1 0 0 1 "Taylor et al., 1995" 2 2 2 2 2 2 2 2 1 1 1 1 0 0 0 0 0 0 2R_5445755_5446000 2R 5445755 5446000 CG1429 Mef2 transcript overlap 1.389002037 5445865 1.759 5445865 1.994778068 5445865 0 0 0 0 0 1 "Taylor et al., 1995" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_5447070_5447342 2R 5447070 5447342 CG1429 Mef2 transcript overlap 2.540733198 5447178 2.981 5447178 3.420365535 5447178 0 0 0 0 0 1 "Taylor et al., 1995" 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_5471782_5472603 2R 5471782 5472603 CG12130 CG12130 transcript overlap 2.214867617 5472155 6.615 5472155 5.424281984 5472155 1 0 1 0 0 0 1 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 2R_5485185_5486282 2R 5485185 5486282 CG12134 CG12134 2223 1.257637475 5485832 3.198 5485832 5.293733681 5485567 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_5488940_5489484 2R 5488940 5489484 CG2328 eve 1570 1.595723014 5489314 2.088 5489314 3.510443864 5489314 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_5491842_5492064 2R 5491842 5492064 CG2328 eve transcript overlap 2.394093686 5491895 1.569 5491895 3.090078329 5491895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_5492567_5493346 2R 5492567 5493346 CG2328 eve 1513 2.424643585 5492676 2.424 5492950 4.394255875 5492950 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 2R_5497584_5498642 2R 5497584 5498642 CG2331 TER94 2332 1.358452138 5498472 3.486 5498200 5.762402089 5498200 0 1 1 0 0 0 2 2 1 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 2R_5535799_5536001 2R 5535799 5536001 CG15862 Pka-R2 transcript overlap 1.414460285 5535901 1.99 5535901 3.276762402 5535901 0 0 0 0 0 0 4 2 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_5567884_5568395 2R 5567884 5568395 CG2264 CG2264 transcript overlap 1.618126273 5567978 3.213 5567978 2.996083551 5567978 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2R_5584402_5584682 2R 5584402 5584682 CG1371 CG1371 transcript overlap 0.511201629 5584512 1.914 5584512 3.391644909 5584512 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_5611344_5612005 2R 5611344 5612005 CG17870 CG1381 14-3-3zeta CG1381 TSS overlap 2.225050916 5611524 2.678 5611804 4.665796345 5611804 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2R_5612812_5613157 2R 5612812 5613157 CG17870 14-3-3zeta transcript overlap 1.454175153 5612987 2.278 5612987 1.656657963 5612987 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_5636019_5636854 2R 5636019 5636854 CG30011 gem 305 1.49185336 5636705 2.566 5636401 5.933420366 5636705 0 1 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2R_5781023_5781535 2R 5781023 5781535 CG18408 CAP transcript overlap 1.291242363 5781128 2.739 5781128 4.834203655 5781128 0 0 0 0 0 0 4 3 1 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2R_5827568_5828108 2R 5827568 5828108 CG12908 Ndg transcript overlap 1.187372709 5827938 2.407 5827938 2.963446475 5827938 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_5924436_5924777 2R 5924436 5924777 CG12897 CG12897 TSS overlap 0.890020367 5924668 1.733 5924546 3.587467363 5924668 0 0 0 0 0 0 2 2 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2R_5943722_5944567 2R 5943722 5944567 CG11763 micr transcript overlap 1.354378819 5944390 4.169 5944390 7.779373368 5944390 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_5996999_5999006 2R 5996999 5999006 CG12052 lola transcript overlap 4.031568228 5998298 3.804 5998298 6.071801567 5997079 1 0 1 0 0 0 2 2 2 1 1 0 6 4 4 1 0 0 2 0 0 0 0 0 2R_6032292_6032845 2R 6032292 6032845 CG12052 lola transcript overlap 5.355397149 6032402 1.668 6032402 3.25848564 6032402 0 0 0 0 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_6035835_6036115 2R 6035835 6036115 CG12052 lola transcript overlap 3.540733198 6035945 0.972 6035945 2.964751958 6035945 0 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6046337_6048251 2R 6046337 6048251 CG12052 lola transcript overlap 2.593686354 6046446 3.961 6047548 4.161879896 6047242 0 0 0 0 0 0 1 1 1 0 0 0 3 2 0 0 0 0 3 2 1 0 0 0 2R_6065852_6066149 2R 6065852 6066149 CG2368 psq 3568 1.768839104 6065959 1.818 6065959 2.809399478 6065959 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6093259_6096221 2R 6093259 6096221 CG2368 psq transcript overlap 2.082484725 6096051 7.855 6094973 13.4464752 6094973 1 0 1 0 0 0 1 1 0 0 0 0 5 2 1 1 0 0 2 0 0 0 0 0 2R_6107708_6108253 2R 6107708 6108253 CG2368 psq transcript overlap 1.573319756 6108094 3.338 6108094 4.592689295 6108094 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6161195_6162000 2R 6161195 6162000 CG11887 CG16728 CG11887 CG16728 TSS overlap 2.063136456 6161287 3.84 6161424 4.720626632 6161287 0 0 0 0 0 0 1 0 0 0 0 0 4 3 1 0 0 0 1 0 0 0 0 0 2R_6189744_6190265 2R 6189744 6190265 CG12934 CG12934 24925 0.850305499 6190095 2.71 6189853 3.933420366 6189853 0 0 0 0 0 0 2 2 1 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 2R_6329417_6329712 2R 6329417 6329712 CG7222 CG7222 TSS overlap 2.3401222 6329452 2.218 6329553 3.417754569 6329553 0 0 0 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2R_6335735_6335867 2R 6335735 6335867 CG12342 CG12342 TSS overlap 3.196537678 6335775 1.939 6335775 2.596605744 6335775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6354494_6354600 2R 6354494 6354600 CG7686 CG7686 transcript overlap 1.599796334 6354517 1.95 6354517 1.058746736 6354517 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6359798_6360598 2R 6359798 6360598 CG30015 CG30015 transcript overlap 3.723014257 6360177 3.186 6360177 2.842036554 6360177 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 0 1 0 0 0 0 0 2R_6422408_6422668 2R 6422408 6422668 CG12943 CG12943 2840 1.771894094 6422498 5.114 6422498 7.439947781 6422498 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_6452819_6453361 2R 6452819 6453361 CG7722 CG7722 4212 1.235234216 6453202 2.994 6452922 4.225848564 6452922 0 0 0 0 0 0 7 6 5 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_6601428_6601919 2R 6601428 6601919 CG33473 luna transcript overlap 1.764765784 6601538 2.439 6601538 3.892950392 6601538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6616301_6616583 2R 6616301 6616583 CG33473 luna 391 1.50305499 6616411 2.434 6616411 3.466057441 6616411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6694844_6695084 2R 6694844 6695084 CG7734 shn transcript overlap 1.33299389 6694947 11.952 6694947 21.1383812 6694947 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6704722_6705293 2R 6704722 6705293 CG7734 shn transcript overlap 1.607942974 6704832 2.2 6704832 4.244125326 6704832 0 0 0 0 0 0 4 3 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_6707354_6707906 2R 6707354 6707906 CG7734 shn transcript overlap 3.216904277 6707736 3.218 6707736 5.772845953 6707461 1 0 1 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 1 1 1 1 1 0 2R_6713007_6716096 2R 6713007 6716096 CG7734 shn transcript overlap 1.948065173 6715060 5.002 6715060 6.818537859 6715060 0 1 1 0 0 0 5 3 3 2 2 1 4 3 2 1 1 1 2 1 1 1 1 0 2R_6749415_6749761 2R 6749415 6749761 CG13218 CG13218 TSS overlap 1.287169043 6749455 2.524 6749455 3.201044386 6749455 0 0 0 0 0 0 2 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_6753498_6754025 2R 6753498 6754025 CG13216 CG13216 876 1.49592668 6753608 5.348 6753888 9.610966057 6753608 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6823922_6824457 2R 6823922 6824457 CG7745 CG7745 transcript overlap 0.921588595 6824008 2.509 6824008 4.083550914 6824008 0 0 0 0 0 0 4 3 2 2 2 0 3 3 3 2 2 0 0 0 0 0 0 0 2R_6896158_6896915 2R 6896158 6896915 CG13200 CG13200 204 2.042769857 6896268 4.335 6896268 6.011749347 6896268 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_6910370_6910644 2R 6910370 6910644 CG30023 sprt transcript overlap 1.562118126 6910475 1.304 6910475 2.651436031 6910475 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_6913093_6917060 2R 6913093 6917060 CR30506 CG30023 CR30506 sprt TSS overlap 13.86150713 6913318 3.616 6916125 4.541775457 6914790 0 0 0 0 0 0 7 5 4 2 0 0 6 6 6 3 1 1 6 2 1 1 0 0 2R_6975567_6976415 2R 6975567 6976415 CG7776 E(Pc) transcript overlap 1.16293279 6975677 2.521 6975968 3.87075718 6975968 0 0 0 0 0 0 3 3 1 1 0 0 3 3 1 0 0 0 1 0 0 0 0 0 2R_7040721_7040911 2R 7040721 7040911 CG9015 en transcript overlap 1.279022403 7040742 2.179 7040742 2.744125326 7040742 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_7041726_7041981 2R 7041726 7041981 CG9015 en transcript overlap 1.813645621 7041812 1.972 7041812 3.643603133 7041812 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7043655_7044263 2R 7043655 7044263 CG9015 en TSS overlap 2.49185336 7044163 3.028 7044163 3.395561358 7044023 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7048168_7048725 2R 7048168 7048725 CG9015 en 4051 1.266802444 7048278 4.942 7048278 7.68537859 7048278 0 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 2R_7051057_7051337 2R 7051057 7051337 CG9015 en 6940 1.32892057 7051167 1.629 7051167 2.361618799 7051167 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 0 0 1 0 0 0 0 0 2R_7053070_7053844 2R 7053070 7053844 CG9015 en 8953 1.583503055 7053676 4.263 7053396 6.793733681 7053396 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_7062435_7062989 2R 7062435 7062989 CG9015 en 18318 1.915478615 7062545 3.929 7062545 5.308093995 7062545 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 2R_7064543_7065075 2R 7064543 7065075 CG9015 en 20426 1.303462322 7064653 3.501 7064653 6.753263708 7064653 0 1 1 0 0 0 1 1 1 1 1 1 2 2 2 2 2 2 0 0 0 0 0 0 2R_7071618_7072090 2R 7071618 7072090 CG9015 en 27501 1.058044807 7071925 2.15 7071645 3.365535248 7071925 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_7108448_7108680 2R 7108448 7108680 CG10897 tou transcript overlap 1.527494908 7108549 1.759 7108549 2.321148825 7108549 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_7113561_7114390 2R 7113561 7114390 CG10897 tou transcript overlap 1.361507128 7113660 4.054 7113940 8.296344648 7113940 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7131854_7132607 2R 7131854 7132607 CG10897 tou 116 2.352342159 7132166 5.591 7132166 8.920365535 7132166 1 0 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2R_7151775_7152596 2R 7151775 7152596 CG9005 CG9005 3298 2.471486762 7152146 3.239 7152146 4.7845953 7152146 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 1 1 1 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2R_7154105_7154381 2R 7154105 7154381 CG9005 CG9005 5628 0.879837067 7154215 2.715 7154215 2.930809399 7154215 0 0 0 0 0 1 "Biemar et al., 2006, based on in situs" 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2R_7156239_7156912 2R 7156239 7156912 CG9003 CG9003 4644 1.83604888 7156763 2.484 7156531 3.34073107 7156531 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2R_7225212_7225609 2R 7225212 7225609 CG13195 CG13195 6856 1.542769857 7225441 2.528 7225441 3.419060052 7225441 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_7241205_7241518 2R 7241205 7241518 CG13194 pyr transcript overlap 1.191446029 7241349 3.014 7241349 3.765013055 7241349 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_7309632_7312483 2R 7309632 7312483 CG12443 ths transcript overlap 9.596741344 7310198 16.57 7310198 24.45561358 7310198 1 0 1 1 0 1 "Stathopoulos et al., 2002" 3 2 2 1 1 1 4 3 3 3 3 2 5 3 3 3 1 1 2R_7315759_7316528 2R 7315759 7316528 CG12443 ths transcript overlap 1.939918534 7316358 2.863 7316080 4.049608355 7316080 0 0 0 0 0 1 "Stathopoulos et al., 2002" 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7408181_7409073 2R 7408181 7409073 CG8280 Ef1alpha48D transcript overlap 2.416496945 7408221 2.42 7408221 2.988250653 7408641 0 0 0 0 0 0 1 1 0 0 0 0 3 2 2 1 1 1 1 1 0 0 0 0 2R_7497951_7498230 2R 7497951 7498230 CG33145 CG33145 transcript overlap 1.567209776 7498061 1.401 7498061 2.667101828 7498061 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7501388_7501737 2R 7501388 7501737 CG8975 RnrS 38 1.876782077 7501585 2.378 7501585 2.44386423 7501585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_7534103_7534383 2R 7534103 7534383 CG8967 otk transcript overlap 0.974541752 7534213 2.089 7534213 3.033942559 7534213 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_7629520_7630529 2R 7629520 7630529 CG30040 jeb transcript overlap 1.350305499 7629871 2.418 7629871 3.964751958 7630375 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 3 1 1 1 0 0 2R_7841690_7842134 2R 7841690 7842134 CG8841 CG8841 transcript overlap 1.742362525 7842034 2.401 7842034 3.546997389 7841917 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_7916058_7916610 2R 7916058 7916610 CG8505 CG8505 1512 1.123217923 7916168 3.117 7916168 3.885117493 7916168 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_7920225_7920503 2R 7920225 7920503 CG8505 CG8505 transcript overlap 1.425661914 7920335 2.421 7920335 2.711488251 7920335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_7970419_7971243 2R 7970419 7971243 CG12369 Lac transcript overlap 2.210794297 7971073 4.528 7971073 6.740208877 7971073 1 0 1 0 0 0 1 1 1 1 0 0 3 3 3 1 0 0 1 0 0 0 0 0 2R_7973876_7974414 2R 7973876 7974414 CG12369 Lac transcript overlap 1.176171079 7974244 2.52 7974244 4.566579634 7974244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_7975995_7976766 2R 7975995 7976766 CG12369 Lac transcript overlap 1.218940937 7976599 3.014 7976330 4.403394256 7976330 0 0 0 0 0 0 1 1 1 0 0 0 2 2 1 1 1 1 2 0 0 0 0 0 2R_8046410_8046931 2R 8046410 8046931 CG8581 fra transcript overlap 1.434826884 8046768 3.357 8046768 6.822454308 8046768 0 1 1 0 0 0 3 2 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2R_8104912_8106204 2R 8104912 8106204 CG8815 Sin3A transcript overlap 1.805498982 8105126 2.654 8105760 3.727154047 8106040 0 0 0 0 0 0 4 3 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2R_8110167_8110498 2R 8110167 8110498 CG8604 Amph transcript overlap 0.906313646 8110350 2.012 8110350 2.262402089 8110235 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_8234006_8234557 2R 8234006 8234557 CG8776 CG8776 10170 1.123217923 8234388 2.588 8234388 3.501305483 8234108 0 0 0 0 0 0 3 2 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2R_8270854_8270992 2R 8270854 8270992 CG8766 tafazzin transcript overlap 1.132382892 8270893 2.788 8270893 3.479112272 8270893 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8273469_8274086 2R 8273469 8274086 CG8657 Dgkepsilon transcript overlap 1.849287169 8273509 2.387 8273649 5.528720627 8273649 0 1 1 0 0 0 2 2 2 1 0 0 3 3 2 2 0 0 0 0 0 0 0 0 2R_8291749_8293745 2R 8291749 8293745 CG17579 sca 2706 1.609979633 8292655 4.191 8292977 6.285900783 8292977 0 1 1 0 0 1 "Mlodzik et al., 1990; Stathopoulos et al., 2002 " 2 2 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_8295676_8296548 2R 8295676 8296548 CG17579 sca TSS overlap 2.50101833 8296449 6.74 8296065 7.473890339 8296065 1 0 1 0 0 1 "Mlodzik et al., 1990; Stathopoulos et al., 2002 " 2 2 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2R_8395930_8396068 2R 8395930 8396068 CG3821 Aats-asp 158 3.560081466 8395969 2.32 8395969 1.489556136 8395969 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_8431859_8432069 2R 8431859 8432069 CG3845 l(2)01424 TSS overlap 2.276985743 8431899 1.644 8431899 1.693211488 8431899 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8461721_8462523 2R 8461721 8462523 CG3879 Mdr49 TSS overlap 2.781059063 8462356 3.138 8462356 4.750652742 8462356 0 0 0 0 1 1 "Stathopoulos et al., 2002, unpublished" 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2R_8463621_8464113 2R 8463621 8464113 CG3879 Mdr49 1370 1.82892057 8463968 3.091 8463731 4.108355091 8463731 0 0 0 0 0 1 "Stathopoulos et al., 2002, unpublished" 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_8473619_8474460 2R 8473619 8474460 CG13321 CG13321 4156 1.571283096 8474274 2.174 8474274 1.915143603 8474274 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_8475575_8476130 2R 8475575 8476130 CG13321 CG13321 6112 1.569246436 8475685 3.026 8475685 1.766318538 8475965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2R_8496347_8496976 2R 8496347 8496976 CG3886 Psc TSS overlap 2.303462322 8496736 2.645 8496456 2.853785901 8496736 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_8500771_8501028 2R 8500771 8501028 CG3886 Psc 3875 1.33503055 8500849 2.973 8500849 1.792428198 8500849 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2R_8513182_8513376 2R 8513182 8513376 CG3905 Su(z)2 transcript overlap 1.257637475 8513222 1.272 8513222 2.292428198 8513222 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_8558560_8559247 2R 8558560 8559247 CG13323 CG13323 3948 1.6598778 8559153 2.586 8558670 1.127937337 8559153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8703577_8704130 2R 8703577 8704130 CG32904 CG33182 seq CG33182 transcript overlap 1.469450102 8703960 2.328 8703960 2.994778068 8703960 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8705254_8705750 2R 8705254 8705750 CG32904 CG33182 seq CG33182 transcript overlap 5.287169043 8705334 2.346 8705334 4.187989556 8705334 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 0 0 1 0 0 0 0 0 2R_8709545_8711452 2R 8709545 8711452 CG33182 CG33182 transcript overlap 2.378818737 8710493 12.067 8711003 17.70104439 8711003 1 0 1 0 0 0 2 2 1 1 0 0 2 1 0 0 0 0 4 2 2 2 0 0 2R_8712009_8712289 2R 8712009 8712289 CG33182 CG33182 transcript overlap 1.233197556 8712119 2.799 8712119 3.54308094 8712119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8739452_8740769 2R 8739452 8740769 CG4654 Dp transcript overlap 1.712830957 8740321 10.435 8740321 13.12010444 8740321 0 1 1 0 0 0 4 2 1 1 1 0 4 2 1 0 0 0 0 0 0 0 0 0 2R_8821235_8822055 2R 8821235 8822055 CG17047 CG17047 5673 1.677189409 8821900 3.277 8821621 3.873368146 8821621 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2R_8825225_8825477 2R 8825225 8825477 CG17047 CG17047 9663 1.483706721 8825335 2.66 8825335 4.253263708 8825335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8853379_8853891 2R 8853379 8853891 CR33577 mir-184S 7992 4.024439919 8853462 3.743 8853462 2.635770235 8853734 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 2R_8927520_8927658 2R 8927520 8927658 CG33470 CG33470 TSS overlap 1.147657841 8927559 2.284 8927559 1.407310705 8927559 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_8963542_8964890 2R 8963542 8964890 CG4832 cnn transcript overlap 1.877800407 8963652 6.314 8963929 14.39033943 8963929 0 1 1 0 0 0 6 4 4 1 1 0 5 5 3 1 1 0 0 0 0 0 0 0 2R_8965221_8966408 2R 8965221 8966408 CG4832 cnn TSS overlap 2.027494908 8966308 5.633 8966029 3.25848564 8966029 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_8997841_8998933 2R 8997841 8998933 CG5912 arr transcript overlap 1.700610998 8998791 3.401 8998791 4.110966057 8998791 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 2R_9016294_9016833 2R 9016294 9016833 CG6033 drk transcript overlap 1.552953157 9016663 2.978 9016663 4.171018277 9016663 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 2R_9049508_9050051 2R 9049508 9050051 CG33528 CG33528 612 0.968431772 9049903 2.767 9049623 3.492167102 9049903 0 0 0 0 0 0 3 3 3 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 2R_9061177_9062894 2R 9061177 9062894 CG6145 CG6145 transcript overlap 12.55397149 9062396 4.302 9061846 5.792428198 9061427 1 0 1 0 0 0 6 3 1 0 0 0 8 4 0 0 0 0 1 0 0 0 0 0 2R_9071344_9071968 2R 9071344 9071968 CG13333 CG13333 TSS overlap 1.144602851 9071728 2.597 9071728 3.90078329 9071728 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_9075642_9080916 2R 9075642 9080916 CG13334 CG13334 1190 6.922606925 9077072 24.31 9077072 25.65143603 9077072 1 0 1 0 0 0 5 0 0 0 0 0 10 0 0 0 0 0 8 0 0 0 0 0 2R_9081261_9087419 2R 9081261 9087419 CG13335 CG13335 2717 4.798370672 9085974 15.428 9085974 18.25326371 9085974 1 0 1 0 0 0 6 0 0 0 0 0 8 0 0 0 0 0 13 0 0 0 0 0 2R_9095295_9096135 2R 9095295 9096135 CG13335 CG13335 5159 4.66802444 9095685 6.884 9095685 9.911227154 9095685 1 0 1 0 0 0 2 2 2 0 0 0 4 4 4 1 0 0 2 0 0 0 0 0 2R_9099858_9101531 2R 9099858 9101531 CG6191 CG6191 transcript overlap 7.527494908 9099968 3.095 9100804 3.731070496 9100804 0 0 0 0 0 0 4 1 1 0 0 0 3 0 0 0 0 0 2 2 0 0 0 0 2R_9108349_9109163 2R 9108349 9109163 CG6191 CG6191 transcript overlap 1.582484725 9109064 2.66 9108779 3.437336815 9108779 0 0 0 0 0 0 1 1 0 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 2R_9136112_9137532 2R 9136112 9137532 CG17716 fas 1463 2.556008147 9136502 4.083 9137362 6.343342037 9137362 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 2R_9138085_9138854 2R 9138085 9138854 CG17716 fas 141 1.389002037 9138685 4.083 9138685 7.889033943 9138429 0 1 1 0 0 0 3 3 3 2 2 0 2 1 1 1 1 0 1 0 0 0 0 0 2R_9197348_9197594 2R 9197348 9197594 CG17716 fas transcript overlap 1.255600815 9197430 2.413 9197430 3.810704961 9197430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_9370096_9370451 2R 9370096 9370451 CG6543 CG6543 TSS overlap 1.760692464 9370274 4.237 9370274 7.62924282 9370274 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_9417910_9418187 2R 9417910 9418187 CG18076 shot transcript overlap 0.819755601 9418020 3.573 9418020 4.174934726 9418020 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_9426846_9427332 2R 9426846 9427332 CG18076 shot transcript overlap 2.511201629 9426882 3.307 9427162 6.531331593 9427162 1 0 1 0 0 0 3 3 2 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 2R_9441043_9441861 2R 9441043 9441861 CG18076 shot transcript overlap 1.071283096 9441340 3.019 9441412 6.657963446 9441340 0 1 1 0 0 0 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 2R_9457267_9457843 2R 9457267 9457843 CG18076 shot transcript overlap 1.300407332 9457394 1.934 9457673 2.951697128 9457673 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2R_9469691_9470023 2R 9469691 9470023 CG6671 AGO1 transcript overlap 2.065173116 9469923 2.655 9469783 1.553524804 9469783 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_9516607_9516877 2R 9516607 9516877 CG30482 CG8118 CG30482 mam transcript overlap 1.710794297 9516711 2.512 9516711 2.592689295 9516711 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_9680668_9680796 2R 9680668 9680796 CG8309 CG8309 TSS overlap 9.123217923 9680702 1.822 9680702 0.906005222 9680702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_9821946_9823356 2R 9821946 9823356 CG8589 CG8589 4730 1.910386965 9823206 3.855 9822060 5.65535248 9822060 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2R_9826089_9827973 2R 9826089 9827973 CG8589 CG8589 8873 1.563136456 9826734 4.314 9826734 6.780678851 9826734 0 1 1 0 0 0 2 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 2R_9944035_9944799 2R 9944035 9944799 CG10108 phyl transcript overlap 1.522403259 9944629 2.003 9944145 3.30156658 9944629 0 0 0 0 0 0 2 2 2 2 2 0 1 1 1 1 0 0 2 1 1 0 0 0 2R_9945348_9946715 2R 9945348 9946715 CG10108 phyl transcript overlap 2.032586558 9946017 12.537 9946017 21.67624021 9946017 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3 0 0 0 0 0 2R_9946972_9947224 2R 9946972 9947224 CG10108 phyl TSS overlap 1.762729124 9947159 2.977 9947159 3.007832898 9947159 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_9997174_9997703 2R 9997174 9997703 CG10109 L transcript overlap 1.428716904 9997279 2.712 9997279 3.168407311 9997533 0 0 0 0 0 0 1 1 1 0 0 0 4 1 1 0 0 0 0 0 0 0 0 0 2R_10072028_10072562 2R 10072028 10072562 CG10117 ttv transcript overlap 0.898167006 10072138 3.852 10072395 5.234986945 10072395 0 1 1 0 0 0 3 3 3 3 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2R_10085349_10085620 2R 10085349 10085620 CG10117 ttv transcript overlap 0.927698574 10085429 2.934 10085429 3.746736292 10085429 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_10096693_10096963 2R 10096693 10096963 CG10117 ttv transcript overlap 0.925661914 10096793 1.133 10096793 3.018276762 10096793 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_10270589_10271158 2R 10270589 10271158 CG10151 CG10151 TSS overlap 1.715885947 10270699 2.194 10270972 4.046997389 10270699 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_10332074_10332342 2R 10332074 10332342 CG10202 CG10202 2508 1.525458248 10332176 2.246 10332176 3.390339426 10332176 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_10442606_10443526 2R 10442606 10443526 CG10253 CG10253 4637 1.821391485 10442969 2.098499062 10442695 3.137199434 10442695 0 0 0 0 0 0 5 4 3 2 2 2 2 2 1 1 1 1 3 1 1 1 0 0 2R_10450256_10450764 2R 10450256 10450764 CG10255 Lap1 TSS overlap 1.927310488 10450365 2.756097561 10450594 3.748231966 10450365 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_10478892_10479425 2R 10478892 10479425 CG12424 CG12424 transcript overlap 1.591900312 10479118 3.262664165 10478986 3.574257426 10479118 0 0 0 0 0 0 0 0 0 0 0 0 3 2 2 2 2 0 1 0 0 0 0 0 2R_10485206_10486026 2R 10485206 10486026 CG12424 CG12424 transcript overlap 1.370716511 10485591 2.15478424 10485591 3.205091938 10485591 0 0 0 0 0 0 4 3 2 1 1 0 3 1 1 0 0 0 2 0 0 0 0 0 2R_10486384_10486974 2R 10486384 10486974 CG12424 CG12424 transcript overlap 1.738317757 10486807 2.351782364 10486486 2.54738331 10486486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_10490319_10490916 2R 10490319 10490916 CG12424 CG12424 transcript overlap 1.888888889 10490637 2.216697936 10490637 3.120226308 10490637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_10496314_10497681 2R 10496314 10497681 CG7761 pcs transcript overlap 1.764278297 10497189 5.139774859 10496352 4.997171146 10496352 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_10540466_10540744 2R 10540466 10540744 CG7449 hbs transcript overlap 1.202492212 10540575 2.100375235 10540575 3.063649222 10540575 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_10548844_10549381 2R 10548844 10549381 CG7449 hbs transcript overlap 1.633437175 10548950 2.419324578 10548950 3.56718529 10548950 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_10564475_10564761 2R 10564475 10564761 CG33467 CG33467 6343 1.062305296 10564585 2.342401501 10564585 2.110325318 10564585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_10614295_10615291 2R 10614295 10615291 CG11798 chn 14829 1.598130841 10615125 2.120075047 10614620 4.521923621 10614620 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_10642445_10643584 2R 10642445 10643584 CG11798 chn transcript overlap 1.54517134 10642895 2.356472795 10642895 3.997171146 10642895 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_10645614_10646140 2R 10645614 10646140 CG11798 chn transcript overlap 1.823468328 10645722 2.693245779 10645722 5.623762376 10645722 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 2R_10647355_10647634 2R 10647355 10647634 CG11798 chn transcript overlap 2.177570093 10647464 6.409005629 10647464 10.93635078 10647464 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 2R_10751610_10751860 2R 10751610 10751860 CG33466 Fs transcript overlap 1.31152648 10751720 2.976547842 10751720 7.052333805 10751720 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_10851859_10852419 2R 10851859 10852419 CG16801 CG16801 transcript overlap 1.266874351 10852249 1.87804878 10851969 3.862800566 10851969 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_10865075_10865824 2R 10865075 10865824 CG8166 unc-5 transcript overlap 1.787123572 10865130 2.861163227 10865682 4.838755304 10865682 0 0 0 0 0 0 2 1 1 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2R_10867186_10868569 2R 10867186 10868569 CG8166 unc-5 transcript overlap 1.282450675 10867575 3.314258912 10868125 2.161244696 10868125 0 0 0 0 0 0 2 1 0 0 0 0 7 6 0 0 0 0 1 1 0 0 0 0 2R_10871499_10872332 2R 10871499 10872332 CG8166 unc-5 transcript overlap 1.42886812 10871889 2.254221388 10871889 3.530410184 10871889 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_10893622_10893881 2R 10893622 10893881 CG8171 dup transcript overlap 1.92211838 10893711 2.443714822 10893711 2.548797737 10893711 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_10975570_10975936 2R 10975570 10975936 CG8179 CG8179 transcript overlap 1.395638629 10975700 1.353658537 10975700 2.26874116 10975837 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_11189917_11191440 2R 11189917 11191440 CG8205 fus transcript overlap 1.273104881 11190556 5.475609756 11190556 9.73125884 11190556 0 1 1 0 0 0 5 3 3 1 0 0 3 2 2 1 0 0 1 0 0 0 0 0 2R_11214388_11215170 2R 11214388 11215170 CG30080 CG30080 transcript overlap 2.452751817 11214794 4.490619137 11214794 7.131541726 11214794 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_11249825_11250659 2R 11249825 11250659 CG30089 CG30089 transcript overlap 3.176531672 11250215 13.55253283 11250215 27.47524752 11250215 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 2R_11251137_11251464 2R 11251137 11251464 CG30089 CG30089 transcript overlap 1.586708204 11251240 5.313320826 11251240 8.240452617 11251240 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_11254738_11255018 2R 11254738 11255018 CG30089 CG30089 transcript overlap 1.335410177 11254848 1.606941839 11254848 2.181046676 11254848 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_11262839_11263118 2R 11262839 11263118 CG30089 CG30089 transcript overlap 2.385254413 11262948 4.661350844 11262948 5.801980198 11262948 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_11265764_11266285 2R 11265764 11266285 CG30089 CG30089 transcript overlap 1.242990654 11265876 2.066604128 11265876 3.428571429 11265876 0 0 0 0 0 0 1 1 1 1 1 1 4 1 1 1 0 0 0 0 0 0 0 0 2R_11270050_11271893 2R 11270050 11271893 CG30089 CG30089 transcript overlap 2.689511942 11270685 7.628517824 11270685 15.28571429 11270685 1 0 1 0 0 0 4 4 1 1 1 0 1 1 1 0 0 0 3 0 0 0 0 0 2R_11282061_11282521 2R 11282061 11282521 CG30084 tun transcript overlap 1.115264798 11282386 12.76266417 11282386 20.61669024 11282386 0 1 1 0 0 0 5 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 2R_11304961_11306011 2R 11304961 11306011 CG30084 tun transcript overlap 4.683281412 11305344 7.971857411 11305562 21.67892504 11305562 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_11331743_11332279 2R 11331743 11332279 CG30084 tun 71 1.421599169 11332109 4.785178236 11332109 7.554455446 11332109 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_11380733_11381573 2R 11380733 11381573 CG30085 CG30085 transcript overlap 1.966770509 11381123 6.700750469 11381123 11.25459689 11381123 0 1 1 0 0 0 4 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_11382110_11382640 2R 11382110 11382640 CG30085 CG30085 transcript overlap 1.317757009 11382197 1.979362101 11382197 4.346534653 11382197 0 0 0 0 0 0 2 2 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_11387916_11388994 2R 11387916 11388994 CG8355 sli transcript overlap 1.125649013 11388069 5.89587242 11388555 8.889674682 11388555 0 1 1 0 0 0 4 4 4 3 2 2 2 2 2 1 0 0 0 0 0 0 0 0 2R_11390319_11390599 2R 11390319 11390599 CG8355 sli transcript overlap 1.177570093 11390429 1.459662289 11390429 3.254596888 11390429 0 0 0 0 0 0 2 2 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_11405557_11406936 2R 11405557 11406936 CG8355 sli TSS overlap 3.225337487 11405793 5.806754221 11405932 12.59405941 11405932 1 0 1 0 0 0 2 2 1 0 0 0 2 1 1 0 0 0 3 0 0 0 0 0 2R_11412702_11413494 2R 11412702 11413494 CG33463 CG33463 1412 1.773624091 11412779 3.334896811 11413036 5.234794908 11413036 0 1 1 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 2R_11414043_11415061 2R 11414043 11415061 CG33463 CG33463 2753 1.485981308 11414134 3.139774859 11414891 4.882602546 11414891 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 2R_11418735_11419974 2R 11418735 11419974 CG33463 CG33463 7445 1.703011423 11419429 3.267354597 11419429 7.61669024 11419429 0 1 1 0 0 0 2 0 0 0 0 0 4 1 1 0 0 0 1 1 0 0 0 0 2R_11526359_11527408 2R 11526359 11527408 CG8389 CG8389 transcript overlap 1.398753894 11526959 2.322701689 11526679 4.340876945 11526679 0 0 0 0 0 0 4 1 0 0 0 0 2 2 1 0 0 0 2 1 1 0 0 0 2R_11533675_11534031 2R 11533675 11534031 CG8399 CG8399 transcript overlap 0.559709242 11533861 1.661350844 11533786 3.132956153 11533786 0 0 0 0 0 0 2 2 2 2 0 0 3 2 2 2 0 0 0 0 0 0 0 0 2R_11625540_11625747 2R 11625540 11625747 CG8421 Asph transcript overlap 1.08411215 11625586 0.922138837 11625586 1.043847242 11625586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_11669736_11670752 2R 11669736 11670752 CG10734 CG10734 2905 2.287642783 11670340 3.109756098 11670340 3.601131542 11670340 0 0 0 0 0 0 3 1 0 0 0 0 2 2 2 1 0 0 2 1 0 0 0 0 2R_11697675_11697955 2R 11697675 11697955 CG8440 Lis-1 transcript overlap 1.142263759 11697785 2.519699812 11697785 3.219236209 11697785 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_11702084_11702620 2R 11702084 11702620 CG8443 CG8443 transcript overlap 1.724818276 11702450 4.076923077 11702450 5.14427157 11702450 0 1 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 2R_11745079_11745707 2R 11745079 11745707 CG15706 CG15701 CG15706 CG15701 TSS overlap 2.769470405 11745539 2.251407129 11745399 3.446958982 11745259 0 0 0 0 0 0 2 2 2 1 0 0 3 1 1 1 0 0 0 0 0 0 0 0 2R_11779194_11779404 2R 11779194 11779404 CG7773 fidipidine transcript overlap 1.289719626 11779304 1.626641651 11779304 2.995756719 11779304 0 0 0 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_11793394_11794112 2R 11793394 11794112 CG7760 cato 173 1.07165109 11793434 2.969981238 11793714 4.386138614 11793714 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_11845878_11846374 2R 11845878 11846374 CG8048 Vha44 transcript overlap 1.417445483 11845988 2.384615385 11845988 5.664780764 11846227 0 1 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_11982625_11982826 2R 11982625 11982826 CG33524 CG33524 246 1.55867082 11982725 2.791744841 11982725 3.237623762 11982725 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_11983588_11984096 2R 11983588 11984096 CG33524 CG33524 516 1.210799585 11983961 1.91369606 11983961 2.362093352 11983961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_11988174_11989058 2R 11988174 11989058 CG33524 CG33524 5102 1.509865005 11988608 6.805816135 11988608 11.69306931 11988608 0 1 1 0 0 0 3 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_11991392_11991681 2R 11991392 11991681 CG33524 CG33524 8320 1.174454829 11991502 1.855534709 11991502 3.014144272 11991502 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_11994456_11994800 2R 11994456 11994800 CG15712 CG15712 5603 1.126687435 11994565 3.222326454 11994565 5.820367751 11994565 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_12029387_12030420 2R 12029387 12030420 CG4700 Sema-2a transcript overlap 2.040498442 12029970 5.014071295 12029970 9.473833098 12029970 1 0 1 0 0 0 4 2 2 0 0 0 3 2 2 1 1 0 1 0 0 0 0 0 2R_12030869_12031124 2R 12030869 12031124 CG4700 Sema-2a transcript overlap 1.666666667 12030907 1.973733583 12030907 4.574257426 12030907 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_12031904_12032372 2R 12031904 12032372 CG4700 Sema-2a transcript overlap 1.497403946 12032202 3.132270169 12032202 5.291371994 12032202 0 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_12095055_12095956 2R 12095055 12095956 CG5072 Cdk4 transcript overlap 2.11007269 12095506 10.77204503 12095506 18.29561528 12095506 1 0 1 0 0 0 1 1 0 0 0 0 3 3 1 0 0 0 1 0 0 0 0 0 2R_12120129_12120650 2R 12120129 12120650 CG8303 CG8303 1032 1.359293873 12120517 2.381801126 12120517 4.236209335 12120517 0 0 0 0 0 0 4 2 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 2R_12153224_12153480 2R 12153224 12153480 CG8250 Alk 587 1.059190031 12153334 1.292682927 12153334 2.377652051 12153334 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2R_12154620_12155982 2R 12154620 12155982 CG18471 gprs 121 1.561786085 12154995 8.268292683 12154995 16.69306931 12154995 0 1 1 0 0 0 2 1 1 1 1 1 2 2 2 1 1 1 0 0 0 0 0 0 2R_12245496_12246515 2R 12245496 12246515 CG30463 CG30463 TSS overlap 2.523364486 12246435 2.69043152 12246203 5.742574257 12246203 1 0 1 0 0 0 2 2 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2R_12292820_12293367 2R 12292820 12293367 CG33544 Vkor TSS overlap 1.158878505 12293204 1.714821764 12293204 2.743988685 12293075 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_12299407_12300241 2R 12299407 12300241 CG5522 CG5522 transcript overlap 1.601246106 12299651 4.127579737 12299651 4.407355021 12300071 0 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 0 1 0 0 0 0 0 2R_12360557_12361077 2R 12360557 12361077 CG8652 Ugt37c1 807 1.08411215 12360665 1.938086304 12360914 1.438472419 12360914 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 2 0 1 0 0 0 0 0 2R_12448639_12448918 2R 12448639 12448918 CG6622 Pkc53E transcript overlap 1.184839045 12448748 1.356472795 12448748 2.487977369 12448748 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2R_12514188_12514442 2R 12514188 12514442 CG9001 CG9001 transcript overlap 0.563862928 12514274 1.34521576 12514274 2.476661952 12514274 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_12657939_12658751 2R 12657939 12658751 CR33921 snoRNA:U3:54Aa TSS overlap 2.381100727 12658283 1.971857411 12658283 4.297029703 12658283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_12660148_12660819 2R 12660148 12660819 CR30235 CR33628 CR30235 snoRNA:U3:54Ab TSS overlap 2.669781931 12660539 2.415572233 12660259 4.927864215 12660539 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_12894691_12894971 2R 12894691 12894971 CR30232 CR30232 11737 1.293873313 12894801 1.561913696 12894801 1.510608204 12894801 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_12907394_12907867 2R 12907394 12907867 CR30233 tRNA:H:56E 316 1.944963655 12907493 2.255159475 12907493 2.578500707 12907493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_12936752_12937514 2R 12936752 12937514 CG4798 l(2)k01209 transcript overlap 1.322949117 12937344 2.76641651 12937344 3.857142857 12937111 0 0 0 0 0 0 1 0 0 0 0 0 5 3 3 1 0 0 1 0 0 0 0 0 2R_12973025_12973886 2R 12973025 12973886 CG14478 CG14478 transcript overlap 2.05192108 12973134 5.882739212 12973414 9.5572843 12973694 1 0 1 0 0 0 4 3 3 2 1 0 3 3 2 1 1 1 1 1 1 1 1 1 2R_12976135_12977313 2R 12976135 12977313 CG14478 CG14478 transcript overlap 2.003115265 12976583 4.454971857 12976583 6.289957567 12976466 1 0 1 0 0 0 3 3 3 0 0 0 3 3 3 2 0 0 0 0 0 0 0 0 2R_13105527_13105821 2R 13105527 13105821 CG6477 RhoGAP54D TSS overlap 1.710280374 13105553 1.731707317 13105721 2.118811881 13105553 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_13107807_13108283 2R 13107807 13108283 CG4943 lack transcript overlap 1.700934579 13108167 2.291744841 13108167 3.46251768 13108167 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_13149165_13149717 2R 13149165 13149717 CG10936 CG10936 transcript overlap 1.681204569 13149272 1.660412758 13149272 3.161244696 13149272 0 0 0 0 0 0 2 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_13153723_13154247 2R 13153723 13154247 CG10936 CG10936 TSS overlap 1.087227414 13154105 1.594746717 13153969 3.415841584 13153969 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 2R_13193846_13195739 2R 13193846 13195739 CG6446 Sema-1b transcript overlap 5.695742471 13194771 9.405253283 13194771 14.73833098 13195013 1 0 1 0 0 0 3 2 2 1 1 1 1 1 0 0 0 0 2 0 0 0 0 0 2R_13197613_13198208 2R 13197613 13198208 CG6446 Sema-1b transcript overlap 1.256490135 13198049 2.773921201 13198049 4.175388967 13198049 0 0 0 0 0 0 4 3 3 2 2 2 1 1 1 1 1 1 0 0 0 0 0 0 2R_13230913_13231751 2R 13230913 13231751 CG6424 CG6424 transcript overlap 1.94807892 13231583 4.930581614 13231303 10.2758133 13231303 0 1 1 0 0 0 1 1 1 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 2R_13268390_13268670 2R 13268390 13268670 CG6385 CG6385 2611 1.439252336 13268500 1.911819887 13268500 3.479490806 13268500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_13271915_13272265 2R 13271915 13272265 CG5005 HLH54F 15 1.673935618 13272025 2.716697936 13272025 2.057991513 13272025 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2R_13315948_13317240 2R 13315948 13317240 CG5058 grh 412 2.115264798 13316585 16.89587242 13316585 32.47524752 13316585 1 0 1 0 0 0 3 1 1 1 1 0 2 1 1 1 0 0 0 0 0 0 0 0 2R_13318496_13319273 2R 13318496 13319273 CG5058 grh transcript overlap 1.424714434 13318576 4.834896811 13319103 8.868458274 13319103 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_13321885_13322199 2R 13321885 13322199 CG5058 grh transcript overlap 0.716510903 13321995 2.23358349 13321995 3.251768034 13321995 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_13328466_13329079 2R 13328466 13329079 CG5058 grh transcript overlap 1.137071651 13328927 4.161350844 13328927 9.231966054 13328927 0 1 1 0 0 0 3 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 2R_13338215_13338801 2R 13338215 13338801 CG5058 grh transcript overlap 1.723779855 13338605 2.58630394 13338605 4.793493635 13338605 0 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_13385497_13385742 2R 13385497 13385742 CG5784 Mapmodulin transcript overlap 1.431983385 13385578 2.166979362 13385578 1.886845827 13385578 0 0 0 0 0 0 1 1 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2R_13407121_13409028 2R 13407121 13409028 CG5076 elk transcript overlap 1.919003115 13408261 5.317073171 13408039 11.72984441 13408039 0 1 1 0 0 0 4 0 0 0 0 0 8 4 3 1 0 0 2 0 0 0 0 0 2R_13410750_13412110 2R 13410750 13412110 CG5076 elk transcript overlap 1.853582555 13411686 3.968105066 13411686 4.874115983 13411686 0 0 0 0 0 0 4 3 3 1 0 0 3 3 0 0 0 0 2 1 0 0 0 0 2R_13521179_13521434 2R 13521179 13521434 CG5084 CG5084 12071 1.185877466 13521268 1.124765478 13521268 1.667609618 13521268 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_13562874_13563117 2R 13562874 13563117 CG34005 CG34005 TSS overlap 2.007268951 13562949 1.929643527 13562949 3.401697313 13562949 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_13584583_13585081 2R 13584583 13585081 CG14496 CG14496 transcript overlap 1.234683281 13584602 2.055347092 13584602 2.13437058 13584602 0 0 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 2R_13671159_13672242 2R 13671159 13672242 CG5738 lolal transcript overlap 2.406022845 13671512 3.324577861 13671512 3.014144272 13671512 0 0 0 0 0 0 3 1 1 1 1 1 3 2 1 1 1 1 0 0 0 0 0 0 2R_13705189_13705702 2R 13705189 13705702 CG33958 CG33958 transcript overlap 0.996884735 13705292 1.837711069 13705292 2.954738331 13705292 0 0 0 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2R_13750342_13750622 2R 13750342 13750622 CG10917 fj transcript overlap 1.046728972 13750452 3.409005629 13750452 5.632248939 13750452 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_13768095_13768577 2R 13768095 13768577 CG10917 fj 20469 1.661474559 13768407 2.310506567 13768205 2.782178218 13768205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_13814444_13815451 2R 13814444 13815451 CG18540 CG18540 123 2.453790239 13814760 4.592870544 13814760 10.44978784 13814760 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_13820658_13821208 2R 13820658 13821208 CG14505 CG14505 1818 1.457943925 13821042 2.354596623 13821042 3.697312588 13821042 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_13854931_13855302 2R 13854931 13855302 CG14503 CG14503 28246 1.053997923 13855132 2.414634146 13855006 2.074964639 13855006 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 1 0 1 0 0 0 0 0 2R_13872118_13872594 2R 13872118 13872594 CG15066 IM23 25501 1.986500519 13872424 2.665103189 13872424 2.958981612 13872424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_14025929_14026486 2R 14025929 14026486 CG5226 CG5226 2953 1.171339564 14026039 3.183864916 14026307 5.618104668 14026307 0 1 1 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_14042133_14042699 2R 14042133 14042699 CG10924 CG10924 TSS overlap 1.195223261 14042289 3.38836773 14042289 4.212164074 14042289 0 0 0 0 0 0 4 2 2 2 0 0 4 2 1 1 0 0 0 0 0 0 0 0 2R_14057375_14057837 2R 14057375 14057837 CG15069 Rgk2 947 1.116303219 14057446 2.183864916 14057446 2.991513437 14057446 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 2R_14077291_14077816 2R 14077291 14077816 CG30115 CG30115 793 1.611630322 14077401 2.605065666 14077401 4.285714286 14077401 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_14079373_14079866 2R 14079373 14079866 CG30115 CG30115 2875 3.425752856 14079697 3.939962477 14079697 5.487977369 14079697 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_14089984_14090350 2R 14089984 14090350 CG30115 CG30115 13486 2.342679128 14090095 1.637898687 14090180 3.206506365 14090180 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_14097869_14098443 2R 14097869 14098443 CG30115 CG30115 21371 2.093457944 14097977 2.384615385 14098273 3.315417256 14098273 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 2R_14126994_14127284 2R 14126994 14127284 CG10927 CG10927 661 1.106957425 14127114 1.747654784 14127114 2.277227723 14127114 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_14177244_14177760 2R 14177244 14177760 CG5469 Gint3 833 1.127725857 14177593 2.186679174 14177347 3.545968883 14177347 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_14180880_14181443 2R 14180880 14181443 CG33136 CG33136 272 2.005192108 14181270 4.293621013 14180990 8.325318246 14180990 1 0 1 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 2R_14189745_14190024 2R 14189745 14190024 CG15085 edl 1350 0.809968847 14189855 1.290806754 14189855 1.920792079 14189855 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_14192186_14193556 2R 14192186 14193556 CG15085 edl 3791 1.580477674 14192567 4.394934334 14193106 8.561527581 14193106 0 1 1 0 0 0 1 1 1 1 1 1 5 4 4 3 3 2 0 0 0 0 0 0 2R_14202773_14203479 2R 14202773 14203479 CG15072 CG15072 0 2.20768432 14202883 2.584427767 14202883 4.455445545 14202883 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_14296592_14296872 2R 14296592 14296872 CG15080 CG15080 1292 0.956386293 14296702 2.014071295 14296702 2.893917963 14296702 0 0 0 0 0 0 4 4 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_14311109_14311941 2R 14311109 14311941 CG15094 CG15094 TSS overlap 2.479750779 14311779 2.177298311 14311606 5.032531825 14311499 1 0 1 0 0 0 5 1 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 2R_14314407_14314942 2R 14314407 14314942 CG15095 l(2)08717 transcript overlap 1.782969886 14314517 2.639774859 14314517 4.947666195 14314517 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 1 1 1 0 0 0 2R_14317126_14318002 2R 14317126 14318002 CG15095 l(2)08717 transcript overlap 2.08411215 14317164 4.623827392 14317566 7.868458274 14317566 1 0 1 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 2R_14474823_14475459 2R 14474823 14475459 CG18608 prod 10555 1.043613707 14475289 2.099437148 14475011 3.724186704 14475011 0 0 0 0 0 0 2 2 2 2 2 1 2 2 0 0 0 0 1 0 0 0 0 0 2R_14481615_14482162 2R 14481615 14482162 CG18608 prod 3852 1.167185877 14481725 3.813320826 14481992 6.635077793 14481725 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_14581840_14582165 2R 14581840 14582165 CG16720 5-HT1A TSS overlap 1.733125649 14582014 2.490619137 14582014 3.930693069 14582014 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_14658684_14659223 2R 14658684 14659223 CG15112 ena transcript overlap 2.979231568 14659053 2.57879925 14659053 2.578500707 14659053 0 0 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 2R_14678621_14678977 2R 14678621 14678977 CG10737 CG10737 33 3.681204569 14678731 1.541275797 14678883 2.859971711 14678731 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_14772582_14773673 2R 14772582 14773673 CG7229 CG7229 1104 1.343717549 14772697 2.12945591 14772697 2.971711457 14773199 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_14777429_14777944 2R 14777429 14777944 CG7229 CG7229 2652 1.303219107 14777524 4.434333959 14777524 9.212164074 14777524 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_14780051_14782739 2R 14780051 14782739 CG7229 CG7229 5274 2.326064382 14782290 4.187617261 14782290 7.314002829 14782290 1 0 1 0 0 0 5 3 3 2 2 0 6 6 4 3 2 0 3 0 0 0 0 0 2R_14785888_14786397 2R 14785888 14786397 CG7230 rib 4192 1.317757009 14785998 3.348030019 14785998 2.656294201 14785998 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_14787222_14788578 2R 14787222 14788578 CG7230 rib 2011 2.05192108 14788419 2.812382739 14788419 4.250353607 14787859 0 0 0 0 0 0 2 0 0 0 0 0 5 3 2 0 0 0 1 0 0 0 0 0 2R_14790141_14791036 2R 14790141 14791036 CG7230 rib TSS overlap 2.722741433 14790867 2.396810507 14790251 3.00990099 14790251 0 0 0 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_14791526_14792043 2R 14791526 14792043 CG7230 rib transcript overlap 2.119418484 14791636 6.301125704 14791906 6.973125884 14791906 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_14807580_14808609 2R 14807580 14808609 CG7417 Tab2 transcript overlap 1.705088266 14808151 3.495309568 14807871 7.231966054 14808151 0 1 1 0 0 0 6 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 2R_14965877_14966154 2R 14965877 14966154 CG9277 betaTub56D transcript overlap 1.800623053 14965984 1.869606004 14965984 1.401697313 14965984 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 2R_15006431_15008007 2R 15006431 15008007 CG8432 CG11237 Rep Oseg6 TSS overlap 1.440290758 15007563 3.226078799 15006896 5.947666195 15006896 0 1 1 0 0 0 6 4 1 0 0 0 7 5 5 2 0 0 2 2 0 0 0 0 2R_15050511_15050784 2R 15050511 15050784 CG9218 sm transcript overlap 2.220145379 15050621 2.714821764 15050621 3.669024045 15050621 0 0 0 0 0 0 1 1 1 1 1 1 2 1 1 0 0 0 1 1 0 0 0 0 2R_15084367_15084926 2R 15084367 15084926 CG9218 sm transcript overlap 1.360332295 15084477 2.49249531 15084757 2.942008487 15084757 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 2R_15123524_15124313 2R 15123524 15124313 CG9218 sm transcript overlap 1.647975078 15123887 2.620075047 15123887 3.779349364 15123887 0 0 0 0 0 0 4 3 2 2 0 0 3 2 2 2 0 0 1 0 0 0 0 0 2R_15128229_15128762 2R 15128229 15128762 CG9218 sm transcript overlap 1.287642783 15128609 2.484052533 15128339 4.636492221 15128339 0 0 0 0 0 0 3 2 0 0 0 0 3 3 0 0 0 0 1 0 0 0 0 0 2R_15145165_15145964 2R 15145165 15145964 CG9218 sm transcript overlap 1.58463136 15145595 2.484052533 15145321 2.575671853 15145321 0 0 0 0 0 0 1 1 0 0 0 0 3 3 1 1 0 0 1 0 0 0 0 0 2R_15172025_15172655 2R 15172025 15172655 CG15125 CG15125 TSS overlap 2.296988577 15172555 1.451219512 15172135 2.787835926 15172415 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 2R_15173930_15177117 2R 15173930 15177117 CR33039 CR33038 CR33037 CR33036 CR33561 CR33602 CR33004 CR33040 CR33613 mir-6-3 mir-4 mir-3 mir-5 mir-4S mir-286 mir-6-1 mir-6-2 mir-309 TSS overlap 7.868120457 15174320 3.023452158 15176947 6.879773692 15175065 1 0 1 0 0 0 5 3 1 0 0 0 5 3 1 1 0 0 3 0 0 0 0 0 2R_15241715_15242272 2R 15241715 15242272 CR33930 snoRNA:185 TSS overlap 3.515057113 15241825 1.732645403 15241825 3.814710042 15241825 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_15286058_15286407 2R 15286058 15286407 CG12501 Or56a TSS overlap 0.956386293 15286237 1.924015009 15286237 2.57708628 15286237 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2R_15310708_15311246 2R 15310708 15311246 CR30520 tRNA:K2:56EF 6208 1.302180685 15310818 2.184803002 15311076 2.738330976 15311076 0 0 0 0 0 0 1 0 0 0 0 0 2 2 2 2 2 2 0 0 0 0 0 0 2R_15327761_15328029 2R 15327761 15328029 CG13874 Obp56h 2411 1.069574247 15327868 1.709193246 15327868 2.519094767 15327868 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_15340424_15340709 2R 15340424 15340709 CG8595 Toll-7 1059 0.939771547 15340534 2.136022514 15340534 1.574257426 15340534 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_15350189_15350749 2R 15350189 15350749 CG8595 Toll-7 8421 1.537902388 15350579 2.910881801 15350299 4.565770863 15350299 0 0 0 0 0 0 1 1 1 1 0 0 3 3 2 2 0 0 2 0 0 0 0 0 2R_15355500_15356230 2R 15355500 15356230 CG8595 Toll-7 13732 1.35721703 15355806 3.055347092 15355596 5.72135785 15355806 0 1 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 0 0 0 2R_15361337_15361896 2R 15361337 15361896 CG8595 Toll-7 19569 1.342679128 15361446 1.890243902 15361726 2.534653465 15361726 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_15372344_15373174 2R 15372344 15373174 CG30448 Obp56i 9805 1.417445483 15372451 1.965290807 15372727 5.148514851 15372727 0 1 1 0 0 0 1 1 1 1 0 0 3 3 3 2 1 0 2 0 0 0 0 0 2R_15394496_15395056 2R 15394496 15395056 CG13872 CG13872 transcript overlap 0.857736241 15394886 2.021575985 15394606 3.108910891 15394606 0 0 0 0 0 0 4 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_15395780_15396401 2R 15395780 15396401 CG13872 CG13872 TSS overlap 1.55867082 15395820 2.203564728 15395960 5.216407355 15395960 0 1 1 0 0 0 1 1 1 1 0 0 2 2 2 0 0 0 1 0 0 0 0 0 2R_15479699_15480503 2R 15479699 15480503 CG10822 CG10822 13381 1.187954309 15480083 2.272045028 15480083 5.684582744 15480083 0 1 1 0 0 0 1 1 1 1 0 0 3 3 3 3 0 0 0 0 0 0 0 0 2R_15493717_15494246 2R 15493717 15494246 CG8654 CG8654 1686 1.706126687 15494078 3.502814259 15494078 7.14427157 15494078 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_15549864_15550916 2R 15549864 15550916 CG16898 CG16898 30014 3.704049844 15550247 9.505628518 15550247 17.93776521 15550247 1 0 1 0 0 0 4 4 3 3 2 2 5 5 4 3 2 1 0 0 0 0 0 0 2R_15554981_15556905 2R 15554981 15556905 CG16898 CG16898 35131 1.496365524 15556183 3.821763602 15556183 6.380480905 15556183 0 1 1 0 0 0 6 6 4 2 0 0 8 5 4 2 2 1 3 2 2 1 0 0 2R_15563952_15565803 2R 15563952 15565803 CG16898 CG16898 44102 1.573208723 15564310 5.135084428 15564310 8.943422914 15564310 0 1 1 0 0 0 1 0 0 0 0 0 3 3 2 1 0 0 0 0 0 0 0 0 2R_15566162_15567578 2R 15566162 15567578 CG16898 CG16898 46312 1.91588785 15566849 6.263602251 15566849 11.20650636 15566849 0 1 1 0 0 0 2 1 1 1 1 0 2 1 1 1 1 1 0 0 0 0 0 0 2R_15571095_15572201 2R 15571095 15572201 CG16898 CG16898 51245 3.471443406 15571484 9.80206379 15571484 16.58698727 15571764 1 0 1 0 0 0 1 0 0 0 0 0 2 2 1 1 1 1 1 0 0 0 0 0 2R_15580496_15582363 2R 15580496 15582363 CG8896 18w 44011 1.660436137 15581681 5.139774859 15581681 9.045261669 15581681 0 1 1 0 0 0 2 1 1 1 0 0 2 2 2 2 2 2 4 1 0 0 0 0 2R_15586886_15587959 2R 15586886 15587959 CG8896 18w 38415 2.223260644 15587237 5.919324578 15587237 9.652050919 15587237 1 0 1 0 0 0 2 2 2 1 1 1 1 1 1 0 0 0 1 1 1 1 1 0 2R_15621142_15621700 2R 15621142 15621700 CG8896 18w 4674 1.705088266 15621532 2.30956848 15621532 3.459688826 15621532 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_15626065_15626208 2R 15626065 15626208 CG8896 18w 166 1.264797508 15626068 1.607879925 15626068 1.673267327 15626068 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 2R_15626381_15626520 2R 15626381 15626520 CG8896 18w transcript overlap 1.330218069 15626413 1.30206379 15626413 1.609618105 15626413 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2R_15683628_15684095 2R 15683628 15684095 CG11041 CG11041 22618 1.7403946 15683709 1.663227017 15683709 3.506364922 15683709 0 0 0 0 0 0 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 2R_15759844_15760194 2R 15759844 15760194 CG11208 CG11208 transcript overlap 1.529595016 15760094 2.19793621 15759954 3.513437058 15759954 0 0 0 0 0 0 2 1 1 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 2R_15822803_15823707 2R 15822803 15823707 CG8920 CG8920 transcript overlap 1.54517134 15823469 2.49249531 15823189 4.493635078 15823469 0 0 0 0 0 0 2 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 2R_15826372_15826919 2R 15826372 15826919 CG8920 CG13868 CG8920 CG13868 transcript overlap 1.157840083 15826482 1.793621013 15826749 2.919377652 15826749 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2R_15842680_15843467 2R 15842680 15843467 CG8929 CG8929 transcript overlap 2.548286604 15843051 3.253283302 15843051 6.411598303 15843051 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_16001828_16002374 2R 16001828 16002374 CG30143 CG30143 15424 1.10384216 16001930 2.170731707 16001930 2.661951909 16001930 0 0 0 0 0 0 2 2 2 2 2 0 2 2 2 2 2 0 2 2 1 0 0 0 2R_16037354_16038155 2R 16037354 16038155 CG13422 CG13422 3035 2.127725857 16037455 2.090994371 16037455 3.01980198 16037735 0 0 0 0 0 0 2 2 1 1 1 0 2 2 2 1 1 0 0 0 0 0 0 0 2R_16053808_16054365 2R 16053808 16054365 CG13427 CG13427 TSS overlap 2.517133956 16054198 8.19043152 16054198 13.60254597 16054198 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_16056242_16056514 2R 16056242 16056514 CG13428 CG13428 978 0.496365524 16056344 2.775797373 16056344 0.441301273 16056344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16071469_16071678 2R 16071469 16071678 CG13424 CG13424 44 1.2596054 16071579 2.24108818 16071579 1.469589816 16071579 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_16082266_16082796 2R 16082266 16082796 CG13432 l(2)05510 transcript overlap 1.386292835 16082626 3.212945591 16082626 3.008486563 16082626 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16115237_16116344 2R 16115237 16116344 CG13425 bl transcript overlap 1.54517134 16115347 3.061913696 16115907 5.888260255 16115907 0 1 1 0 0 0 3 3 3 2 1 1 4 3 2 2 2 1 0 0 0 0 0 0 2R_16117410_16117873 2R 16117410 16117873 CG13425 bl transcript overlap 2.079958463 16117792 1.998123827 16117792 3.967468175 16117792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16118521_16119851 2R 16118521 16119851 CG13425 bl transcript overlap 2.985462098 16118631 5.509380863 16119124 8.777934936 16119124 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 1 1 0 0 2R_16138201_16138486 2R 16138201 16138486 CG16742 CG16742 TSS overlap 1.79854621 16138246 2.505628518 16138246 4.263083451 16138246 0 0 0 0 0 0 3 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 2R_16160808_16161924 2R 16160808 16161924 CG11132 DMAP1 1907 2.12357217 16161197 2.865853659 16161754 5.166902405 16161754 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2R_16182056_16182673 2R 16182056 16182673 CG9025 CG9025 TSS overlap 2.143302181 16182503 1.941838649 16182503 3.311173975 16182223 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2R_16243727_16243985 2R 16243727 16243985 CG13439 CG13442 dpr CG13442 transcript overlap 0.905503634 16243815 1.61163227 16243815 2.483734088 16243815 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16323272_16323502 2R 16323272 16323502 CG9985 sktl 16494 1.468328141 16323346 2.148217636 16323346 2.299858557 16323346 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16338033_16338554 2R 16338033 16338554 CG9985 CG11312 sktl insc transcript overlap 1.336448598 16338424 1.582551595 16338424 2.69165488 16338424 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_16343682_16343891 2R 16343682 16343891 CG11312 insc 36 8.629283489 16343722 1.740150094 16343722 1.408769448 16343722 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16353398_16354169 2R 16353398 16354169 CG17999 CG17999 3332 1.322949117 16353776 3.872420263 16353776 6.534653465 16353776 0 1 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 2R_16366703_16367820 2R 16366703 16367820 CG15227 CG15227 5863 1.421599169 16367090 3.917448405 16367090 8.429985856 16367090 0 1 1 0 0 0 2 2 1 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 2R_16414748_16415569 2R 16414748 16415569 CG9235 CG9235 1717 1.350986501 16415136 3.016885553 16415136 4.688826025 16415136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16459027_16459579 2R 16459027 16459579 CG33704 CG33704 1343 1.173416407 16459409 2.07879925 16459137 2.772277228 16459137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16468195_16470337 2R 16468195 16470337 CG33152 hbn TSS overlap 2.142263759 16469918 4.140712946 16468580 7.026874116 16469918 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_16504442_16504673 2R 16504442 16504673 CG10543 CG10543 transcript overlap 1.106957425 16504443 2.060037523 16504443 0.848656294 16504443 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16549153_16549679 2R 16549153 16549679 CG3722 shg 15062 1.152647975 16549234 2.251407129 16549509 4.024045262 16549234 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_16555324_16556794 2R 16555324 16556794 CG3722 shg 7947 2.90238837 16555875 17.67073171 16555875 28.89674682 16555875 1 0 1 0 0 0 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 0 2R_16564264_16564734 2R 16564264 16564734 CG3722 shg transcript overlap 1.420560748 16564365 3.032833021 16564365 4.727015559 16564645 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_16609164_16609488 2R 16609164 16609488 CG9398 king-tubby 24 5.163032191 16609388 2.102251407 16609388 2.253182461 16609388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_16633983_16634531 2R 16633983 16634531 CG4050 CG4050 transcript overlap 1.37694704 16634091 2.18011257 16634361 3.818953324 16634361 0 0 0 0 0 0 2 2 2 2 1 1 2 1 1 1 1 1 0 0 0 0 0 0 2R_16649216_16649771 2R 16649216 16649771 CG30388 Magi transcript overlap 1.399792316 16649604 3.32739212 16649604 6.04950495 16649604 0 1 1 0 0 0 2 1 1 0 0 0 5 3 0 0 0 0 2 1 0 0 0 0 2R_16690262_16690540 2R 16690262 16690540 CR30210 CR30209 tRNA:G3:57BCb CR30209 TSS overlap 2.577362409 16690372 3.290806754 16690372 5.625176803 16690372 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16755834_16756594 2R 16755834 16756594 CG18375 CG18375 transcript overlap 0.920041537 16756425 1.991557223 16756425 2.524752475 16755944 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_16757974_16759288 2R 16757974 16759288 CG18375 CG18375 TSS overlap 4.919003115 16758522 26.59662289 16758522 41.18387553 16758522 1 0 1 0 0 0 4 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2R_16790160_16790693 2R 16790160 16790693 CG10069 CG10069 transcript overlap 1.250259605 16790550 2.113508443 16790550 2.790664781 16790550 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_16866922_16867444 2R 16866922 16867444 CG15671 cv-2 transcript overlap 1.10384216 16867281 1.881801126 16867032 2.81612447 16867032 0 0 0 0 0 1 "Biemar et al., 2006" 2 2 2 2 2 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_16870016_16870757 2R 16870016 16870757 CG15671 cv-2 transcript overlap 1.53271028 16870380 1.668855535 16870594 3.396039604 16870380 0 0 0 0 0 1 "Biemar et al., 2006" 1 1 0 0 0 0 3 2 1 1 1 1 0 0 0 0 0 0 2R_16871284_16872649 2R 16871284 16872649 CG15671 cv-2 transcript overlap 1.619937695 16872176 3.14727955 16871634 6.528995757 16872176 0 1 1 0 0 1 "Biemar et al., 2006" 3 2 2 2 1 0 2 1 0 0 0 0 1 0 0 0 0 0 2R_16874551_16875010 2R 16874551 16875010 CG15671 cv-2 28 0.985462098 16874872 2.356472795 16874872 3.958981612 16874872 0 0 0 0 0 1 "Biemar et al., 2006" 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16933514_16934294 2R 16933514 16934294 CG10497 Sdc transcript overlap 2.133956386 16933846 4.371482176 16933846 10.56152758 16933846 1 0 1 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_16935965_16936820 2R 16935965 16936820 CG10497 Sdc transcript overlap 1.301142264 16936309 3.022514071 16936429 4.531824611 16936309 0 0 0 0 0 0 4 3 2 1 1 0 3 3 3 3 2 2 1 0 0 0 0 0 2R_16957798_16958320 2R 16957798 16958320 CG10497 Sdc transcript overlap 2.065420561 16958179 2.850844278 16958179 3.227722772 16958179 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2R_16962500_16962754 2R 16962500 16962754 CG10497 Sdc transcript overlap 1.663551402 16962610 2.265478424 16962610 4.913719943 16962610 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16974027_16974778 2R 16974027 16974778 CG10497 Sdc transcript overlap 2.924195223 16974402 4.350844278 16974137 9.939179632 16974402 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_16976793_16976984 2R 16976793 16976984 CG10497 Sdc transcript overlap 1.401869159 16976870 2.485928705 16976870 3.814710042 16976870 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 2R_16982239_16983002 2R 16982239 16983002 CG10497 Sdc transcript overlap 1.745586708 16982349 2.907129456 16982349 6.209335219 16982349 0 1 1 0 0 0 1 1 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2R_16983561_16983778 2R 16983561 16983778 CG10497 Sdc transcript overlap 1.026998962 16983673 1.342401501 16983673 1.956152758 16983673 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_16983918_16985229 2R 16983918 16985229 CG10497 Sdc transcript overlap 1.843198339 16985059 5.434333959 16984488 9.007072136 16984488 0 1 1 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 1 1 0 0 0 0 2R_17001143_17001394 2R 17001143 17001394 CG9847 Fkbp13 transcript overlap 1.036344756 17001250 3.185741088 17001250 4.390381895 17001250 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 2R_17009707_17010319 2R 17009707 17010319 CG15669 MESK2 transcript overlap 1.281412253 17010022 2.540337711 17010022 5.469589816 17010022 0 1 1 0 0 0 3 2 2 2 2 1 3 3 3 1 0 0 0 0 0 0 0 0 2R_17031153_17033313 2R 17031153 17033313 CG10079 Egfr transcript overlap 2.68847352 17031531 7.643527205 17031531 11.92927864 17031531 1 0 1 0 0 0 3 3 2 2 0 0 2 1 1 1 0 0 4 1 0 0 0 0 2R_17051799_17054492 2R 17051799 17054492 CG10079 Egfr transcript overlap 4.232606438 17052990 10.5750469 17052990 21.64780764 17052990 1 0 1 0 0 0 4 2 1 1 0 0 4 3 2 2 0 0 1 0 0 0 0 0 2R_17085601_17086082 2R 17085601 17086082 CG30222 CG30222 4700 1.151609553 17085705 2.366791745 17085705 3.465346535 17085705 0 0 0 0 0 0 4 3 1 1 0 0 4 3 3 3 3 2 0 0 0 0 0 0 2R_17141624_17142691 2R 17141624 17142691 CG10321 CG10321 TSS overlap 2.416407061 17142106 2.342401501 17141968 4.509193777 17141968 0 0 0 0 0 0 4 2 0 0 0 0 3 2 2 1 0 0 1 0 0 0 0 0 2R_17153169_17154293 2R 17153169 17154293 CG10082 CG10082 TSS overlap 2.206645898 17154112 6.153846154 17153695 12.5049505 17153695 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 2R_17204328_17204678 2R 17204328 17204678 CG17922 CG17922 transcript overlap 2.185877466 17204578 1.896810507 17204438 3.994342291 17204438 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_17209096_17209616 2R 17209096 17209616 CG17921 HmgZ transcript overlap 1.483904465 17209482 1.564727955 17209482 3.120226308 17209482 0 0 0 0 0 0 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 2R_17211829_17212117 2R 17211829 17212117 CG17921 HmgZ TSS overlap 1.177570093 17211904 1.933395872 17211904 1.964639321 17211904 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_17214975_17216016 2R 17214975 17216016 CG17921 HmgZ 2905 2.667705088 17215307 6.5684803 17215577 11.1612447 17215307 1 0 1 0 0 0 3 2 2 2 1 1 2 1 1 1 1 0 0 0 0 0 0 0 2R_17221931_17222506 2R 17221931 17222506 CG17950 HmgD transcript overlap 3.794392523 17222336 1.910881801 17222336 2.294200849 17222336 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_17223057_17223585 2R 17223057 17223585 CG17950 HmgD transcript overlap 3.592938733 17223166 1.336772983 17223166 2.879773692 17223444 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_17224338_17225131 2R 17224338 17225131 CG30398 CG30398 284 6.082035306 17224681 1.453095685 17224681 2.431400283 17224961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_17391449_17392476 2R 17391449 17392476 CG3245 PpN58A 1334 2.030114226 17391932 2.941838649 17392111 4.695898161 17392111 0 0 0 0 0 0 0 0 0 0 0 0 4 2 2 1 1 0 2 2 2 1 1 1 2R_17629685_17630096 2R 17629685 17630096 CG5303 CG13503 mei-S332 CG13503 transcript overlap 2.126687435 17629999 2.06097561 17629999 2.589816124 17629724 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 2R_17663228_17663482 2R 17663228 17663482 CG6741 a transcript overlap 0.939771547 17663338 1.696060038 17663338 3.067892504 17663338 0 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_17665784_17666060 2R 17665784 17666060 CG6741 a transcript overlap 1.329179647 17665894 1.62945591 17665894 2.297029703 17665894 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_17749776_17751105 2R 17749776 17751105 CG5799 dve 440 1.562824507 17749889 5.909005629 17750729 17.74823197 17750729 0 1 1 0 0 0 0 0 0 0 0 0 3 2 2 2 2 2 3 2 0 0 0 0 2R_17777989_17779041 2R 17777989 17779041 CG5799 dve transcript overlap 1.800623053 17778362 2.951219512 17778362 3.246110325 17778500 0 0 0 0 0 0 3 2 2 2 2 1 4 4 3 3 3 3 0 0 0 0 0 0 2R_17800844_17801200 2R 17800844 17801200 CG5819 CG5819 TSS overlap 1.842159917 17800878 2.1369606 17800878 2.968882603 17800878 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2R_17824826_17826419 2R 17824826 17826419 CG5820 Gp150 TSS overlap 2.050882658 17824936 5.942776735 17825298 9.732673267 17825298 1 0 1 0 0 0 3 2 2 0 0 0 3 2 2 0 0 0 3 0 0 0 0 0 2R_17830397_17830533 2R 17830397 17830533 CG5820 Gp150 transcript overlap 1.002076843 17830434 2.03564728 17830434 2.859971711 17830434 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_17904982_17905820 2R 17904982 17905820 CG3624 CG3624 transcript overlap 1.273104881 17905092 2.053470919 17905092 2.987270156 17905370 0 0 0 0 0 0 0 0 0 0 0 0 5 4 2 1 0 0 1 0 0 0 0 0 2R_17915649_17916796 2R 17915649 17916796 CG33200 ventrally-expressed-protein-D TSS overlap 4.421599169 17916297 7.02532833 17916144 4.615275813 17916144 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_17920813_17920968 2R 17920813 17920968 CG3613 qkr58E-1 transcript overlap 3.385254413 17920824 0.898686679 17920824 2.01980198 17920824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18013133_18014272 2R 18013133 18014272 CG4444 px transcript overlap 2.257528557 18013520 3.577861163 18013800 5.182461103 18013520 1 0 1 0 0 0 3 3 2 2 0 0 2 2 1 1 0 0 2 1 1 1 0 0 2R_18014966_18015721 2R 18014966 18015721 CG4444 px transcript overlap 2.225337487 18015302 3.489681051 18015302 6.118811881 18015302 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18023192_18023752 2R 18023192 18023752 CG4444 px transcript overlap 1.875389408 18023302 2.288930582 18023302 3.087694484 18023302 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18069371_18069587 2R 18069371 18069587 CG4444 px transcript overlap 1.647975078 18069473 1.37054409 18069473 1.609618105 18069473 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18196073_18199847 2R 18196073 18199847 CG9952 ppa TSS overlap 4.12357217 18196636 9.401500938 18198346 12.61669024 18198346 1 0 1 0 0 0 3 0 0 0 0 0 7 2 1 0 0 0 0 0 0 0 0 0 2R_18205342_18205622 2R 18205342 18205622 CG13521 robo transcript overlap 1.755970924 18205452 2.485928705 18205452 4 18205452 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_18208062_18208257 2R 18208062 18208257 CG13521 robo transcript overlap 2.966770509 18208093 2.054409006 18208093 2.214992928 18208093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18235979_18237083 2R 18235979 18237083 CG30092 jbug transcript overlap 1.329179647 18236621 3.097560976 18236900 6.101838755 18236900 0 1 1 0 0 0 3 2 2 2 1 0 1 1 1 1 1 1 1 0 0 0 0 0 2R_18310022_18310965 2R 18310022 18310965 CG3612 blw 3386 3.320872274 18310809 2.78424015 18310809 2.676096181 18310809 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1 1 1 0 1 1 0 0 0 0 2R_18371956_18372226 2R 18371956 18372226 CG13535 CG13535 transcript overlap 1.254413292 18372066 2.340525328 18372066 3.633663366 18372066 0 0 0 0 0 0 2 2 2 1 1 0 1 1 1 0 0 0 1 1 1 0 0 0 2R_18506437_18506745 2R 18506437 18506745 CG9896 CG9896 TSS overlap 4.830737279 18506575 2.651031895 18506575 4.71145686 18506575 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18552484_18552954 2R 18552484 18552954 CG2956 twi 754 2.699896158 18552784 2.935272045 18552784 5.005657709 18552784 1 0 1 0 0 1 "Jiang et al., 1991" 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 1 0 0 2R_18553474_18554632 2R 18553474 18554632 CG2956 twi TSS overlap 2.939771547 18554075 3.554409006 18553672 5.574257426 18553672 1 0 1 1 0 1 "Jiang et al., 1991" 2 2 1 1 0 0 1 1 0 0 0 0 3 2 1 1 0 0 2R_18557221_18557781 2R 18557221 18557781 CG2956 twi 3513 2.547248183 18557611 4.728893058 18557611 4.782178218 18557611 0 0 0 0 0 1 "Jiang et al., 1991" 0 0 0 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 2R_18585522_18585793 2R 18585522 18585793 CG9882 Art7 transcript overlap 1.341640706 18585624 0.907129456 18585624 2.203677511 18585624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18633584_18634196 2R 18633584 18634196 CG3219 Klp59C TSS overlap 2.851505711 18633763 2.834896811 18634035 4.251768034 18634035 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_18673534_18673813 2R 18673534 18673813 CG30188 CG30188 transcript overlap 1.169262721 18673643 1.666979362 18673643 3.271570014 18673643 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_18695135_18695974 2R 18695135 18695974 CG13539 CG13539 3127 5.251298027 18695244 5.703564728 18695244 8.142857143 18695244 1 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2R_18696758_18697276 2R 18696758 18697276 CG13539 CG13539 4750 2.3894081 18697112 2.903377111 18697112 3.319660537 18696876 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 2R_18697813_18698081 2R 18697813 18698081 CG13539 CG13539 5805 1.102803738 18697914 2.341463415 18697914 3.162659123 18697914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2R_18701141_18701691 2R 18701141 18701691 CG13539 CG13539 9133 0.964693666 18701249 1.760787992 18701249 3.748231966 18701249 0 0 0 0 0 0 5 3 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 2R_18713796_18715155 2R 18713796 18715155 CG3162 CG3162 3984 2.559709242 18714705 4.835834897 18714705 7.130127298 18714445 1 0 1 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 2 2 2 0 0 0 2R_18725917_18726150 2R 18725917 18726150 CG3162 CG3162 6778 1.203530633 18725999 1.481238274 18725999 2.683168317 18725999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_19058717_19059274 2R 19058717 19059274 CG3941 pita transcript overlap 2.124610592 19059104 2.404315197 19058961 4.077793494 19058961 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_19080267_19082487 2R 19080267 19082487 CG5393 apt transcript overlap 2.244029076 19080992 21.62945591 19080853 53.14851485 19080853 1 0 1 0 0 0 3 2 2 2 2 1 7 7 5 2 2 1 0 0 0 0 0 0 2R_19088047_19088565 2R 19088047 19088565 CG5393 apt transcript overlap 2.406022845 19088427 1.998123827 19088427 2.026874116 19088427 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_19146580_19147413 2R 19146580 19147413 CG5403 retn transcript overlap 3.07788162 19146967 7.678236398 19146967 13.20933522 19146967 1 0 1 0 0 0 1 1 1 1 1 0 4 3 2 2 1 0 0 0 0 0 0 0 2R_19152619_19154213 2R 19152619 19154213 CG5403 retn transcript overlap 1.733125649 19153558 5.286116323 19153558 9.888260255 19153558 0 1 1 0 0 0 3 3 2 0 0 0 6 4 4 2 1 0 6 4 2 1 0 0 2R_19253101_19254369 2R 19253101 19254369 CG4051 egl transcript overlap 2.937694704 19253211 3.317073171 19253479 6.086280057 19253479 1 0 1 0 0 0 4 0 0 0 0 0 6 1 0 0 0 0 2 0 0 0 0 0 2R_19440238_19441007 2R 19440238 19441007 CG3725 Ca-P60A transcript overlap 1.59709242 19440628 2.56097561 19440628 4.995756719 19440628 0 0 0 0 0 0 2 0 0 0 0 0 4 2 2 1 1 0 0 0 0 0 0 0 2R_19447297_19447626 2R 19447297 19447626 CG3735 CG3735 TSS overlap 4.010384216 19447456 1.828330206 19447330 0.896746818 19447330 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_19459265_19459511 2R 19459265 19459511 CG2970 CG16783 CG2970 fzr2 transcript overlap 1.478712357 19459341 1.837711069 19459341 3.099009901 19459341 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2R_19485988_19486546 2R 19485988 19486546 CG3090 Sox14 275 1.898234683 19486096 2.817073171 19486096 4.207920792 19486096 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_19494333_19495879 2R 19494333 19495879 CG3832 Phm transcript overlap 2.949117342 19495710 2.591932458 19495430 5.240452617 19494652 1 0 1 1 0 1 "Markstein et al., 2004" 5 1 0 0 0 0 2 1 0 0 0 0 4 0 0 0 0 0 2R_19575911_19576708 2R 19575911 19576708 CG4005 CG3209 CG4005 CG3209 TSS overlap 10.79023884 19576422 4.01782364 19576053 5.647807638 19576053 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2R_19682187_19682321 2R 19682187 19682321 CG3333 Nop60B 4 2.403946002 19682224 1.620075047 19682224 2.03960396 19682224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_19783018_19783879 2R 19783018 19783879 CG3385 nvy TSS overlap 1.497403946 19783687 2.607879925 19783687 3.074964639 19783131 0 0 0 0 0 0 1 1 1 1 1 0 2 2 1 1 1 0 0 0 0 0 0 0 2R_19787684_19788677 2R 19787684 19788677 CG3385 nvy transcript overlap 1.591900312 19788275 2.898686679 19788275 3.13437058 19788275 0 0 0 0 0 0 5 4 4 4 2 0 7 5 4 4 3 0 0 0 0 0 0 0 2R_19951460_19952019 2R 19951460 19952019 CG3483 CG3483 1081 1.91588785 19951570 2.515009381 19951570 3.236209335 19951570 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 2R_20051115_20051783 2R 20051115 20051783 CG13586 CG4622 itp CG4622 transcript overlap 1.384215992 20051142 4.318011257 20051401 7.674681754 20051614 0 1 1 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2R_20087873_20088153 2R 20087873 20088153 CG4681 CG4681 492 0.973001038 20087983 2.101313321 20087983 4.192362093 20087983 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_20101656_20101936 2R 20101656 20101936 CG3541 pio transcript overlap 0.755970924 20101766 1.896810507 20101766 1.893917963 20101766 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20173345_20173885 2R 20173345 20173885 CG3683 CG3683 1320 1.195223261 20173455 2.270168856 20173728 3.985855728 20173728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 2R_20228455_20228737 2R 20228455 20228737 CG33988 CG33988 transcript overlap 1.044652129 20228567 1.768292683 20228567 2.932107496 20228567 0 0 0 0 0 0 1 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2R_20282583_20282873 2R 20282583 20282873 CG16932 Eps-15 TSS overlap 1.812045691 20282792 2.030018762 20282691 3.714285714 20282691 0 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2R_20306290_20306621 2R 20306290 20306621 CG3611 CG3611 TSS overlap 0.979231568 20306324 2.138836773 20306324 3.844413013 20306453 0 0 0 0 0 0 4 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 2R_20321033_20322290 2R 20321033 20322290 CG3629 Dll 140 1.334371755 20321122 7.219512195 20321669 21.03253182 20321669 0 1 1 0 0 0 3 2 2 2 1 1 1 1 1 0 0 0 4 0 0 0 0 0 2R_20348366_20348656 2R 20348366 20348656 CG3650 CG3650 7920 0.759086189 20348475 1.439962477 20348475 2.169731259 20348475 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20352101_20352911 2R 20352101 20352911 CG3650 CG3650 3665 1.69470405 20352462 5.039399625 20352462 9.236209335 20352462 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2R_20389985_20390825 2R 20389985 20390825 CG9047 CG9047 transcript overlap 1.3894081 20390375 3.491557223 20390375 9.388967468 20390375 0 1 1 0 0 0 2 2 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2R_20513800_20514047 2R 20513800 20514047 CG15792 zip transcript overlap 1.445482866 20513877 1.737335835 20513877 3.398868458 20513877 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_20523447_20523956 2R 20523447 20523956 CG3533 uzip transcript overlap 1.099688474 20523559 2.790806754 20523559 3.517680339 20523788 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_20552620_20553456 2R 20552620 20553456 CG2692 gsb-n transcript overlap 1.169262721 20553286 3.57879925 20553010 6.734087694 20553010 0 1 1 0 0 0 1 1 1 1 1 0 4 4 4 4 4 2 0 0 0 0 0 0 2R_20558258_20559098 2R 20558258 20559098 CG2692 gsb-n transcript overlap 1.494288681 20558648 5.090056285 20558648 8.482319661 20558648 0 1 1 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 2R_20560947_20561443 2R 20560947 20561443 CG2692 gsb-n 1020 1.194184839 20561052 3.105065666 20561052 3.517680339 20561052 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2R_20562002_20562826 2R 20562002 20562826 CG2692 gsb-n 2075 1.001038422 20562376 3.253283302 20562376 6.45261669 20562376 0 1 1 0 0 0 2 1 1 0 0 0 3 2 2 1 0 0 0 0 0 0 0 0 2R_20564456_20565235 2R 20564456 20565235 CG3388 gsb 4345 1.335410177 20564844 4.332082552 20564566 7.629420085 20564844 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 2R_20572795_20573628 2R 20572795 20573628 CG3388 gsb 3215 1.518172378 20573183 4.653846154 20573183 8.069306931 20573183 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2R_20605829_20606321 2R 20605829 20606321 CG16778 Tkr transcript overlap 1.8701973 20606130 5.751407129 20606130 9.446958982 20606130 0 1 1 0 0 0 3 3 3 2 2 2 3 2 1 1 0 0 0 0 0 0 0 0 2R_20608192_20608465 2R 20608192 20608465 CG16778 Tkr transcript overlap 1.981308411 20608301 2.252345216 20608301 2.106082037 20608301 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20711378_20711657 2R 20711378 20711657 CG9380 CG9380 14941 1.371754933 20711488 1.635084428 20711488 3.333804809 20711488 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20726798_20727077 2R 20726798 20727077 CG3340 Kr 7138 0.997923157 20726908 1.984052533 20726908 2.456859972 20726908 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2R_20730426_20730943 2R 20730426 20730943 CG3340 Kr 3272 1.453790239 20730778 1.643527205 20730778 2.916548798 20730778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20733052_20733601 2R 20733052 20733601 CG3340 Kr 614 1.325025961 20733154 1.68011257 20733154 2.145685997 20733154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20734044_20734184 2R 20734044 20734184 CG3340 Kr 31 1.406022845 20734084 1.641651032 20734084 2.142857143 20734084 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2R_20760829_20760974 2R 20760829 20760974 CG30428 CG30428 TSS overlap 1.187954309 20760869 1.082551595 20760869 0.817538897 20760869 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_3460_3775 3L 3460 3775 CG32475 mthl8 2703 0.679127726 3555 2.512195122 3555 1.838755304 3555 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4194_5034 3L 4194 5034 CG32475 mthl8 1444 1.104880582 4754 1.811444653 4414 0.876944837 4414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5178_11229 3L 5178 11229 CG32475 mthl8 TSS overlap 1.398753894 10124 6.227954972 5642 1.841584158 6247 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 3L_12844_14449 3L 12844 14449 CG32475 mthl8 6366 1.142263759 14002 4.454971857 13760 2.025459689 13480 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14944_16063 3L 14944 16063 CG32475 mthl8 8466 1.148494289 15611 4.498123827 15054 2.033946252 15611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_31243_31748 3L 31243 31748 CG6821 Lsp1gamma 18222 1.565939772 31353 3.138836773 31586 7.074964639 31586 0 1 1 0 0 0 3 2 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_37839_38119 3L 37839 38119 CG6821 Lsp1gamma 11851 1.308411215 37949 1.864915572 37949 3.024045262 37949 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_107745_108021 3L 107745 108021 CG1210 Pk61C 4963 1.20145379 107851 2.106941839 107851 1.864214993 107851 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_114338_115152 3L 114338 115152 CG1210 Pk61C transcript overlap 4.596053998 114725 2.465290807 114448 3.292786421 114448 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_141157_141715 3L 141157 141715 CG1212 p130CAS 2627 1.657320872 141547 3.971857411 141547 4.639321075 141547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_255375_255675 3L 255375 255675 CG18321 miple2 transcript overlap 1.044932079 255485 2.688436831 255485 1.296671491 255485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_260187_260721 3L 260187 260721 CG13881 CG13881 525 1.709508882 260297 3.248394004 260577 4.098408104 260297 0 0 0 0 0 0 3 1 1 1 1 0 2 2 1 1 0 0 0 0 0 0 0 0 3L_281874_282153 3L 281874 282153 CG1225 RhoGEF3 transcript overlap 0.705329154 281984 1.912205567 281984 3.434153401 281984 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_302919_303404 3L 302919 303404 CG7004 fwd transcript overlap 2.088819227 303300 1.697002141 303027 2.506512301 303027 0 0 0 0 0 0 2 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_304018_305136 3L 304018 305136 CG7004 fwd 606 1.5276907 304686 3.708779443 304408 2.11577424 304408 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_324576_325056 3L 324576 325056 CG1228 Ptpmeg transcript overlap 1.431556949 324669 1.985010707 324886 2.434153401 324669 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 3L_418831_419356 3L 418831 419356 CG17046 klar transcript overlap 1.222570533 418933 2.003211991 419210 2.813314038 419210 0 0 0 0 0 0 4 3 2 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 3L_470661_471101 3L 470661 471101 CG17046 klar transcript overlap 1.601880878 470756 2.749464668 470966 2.636758321 470966 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_596647_597738 3L 596647 597738 CG3200 Reg-2 6557 2.284221526 597568 4.372591006 597568 7.099855282 597568 1 0 1 0 0 0 2 1 1 0 0 0 3 2 1 0 0 0 3 2 1 0 0 0 3L_604880_605428 3L 604880 605428 CG32345 CG32345 transcript overlap 2.007314525 604981 11.54175589 605258 14.39797395 605258 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_646302_646581 3L 646302 646581 CG12189 Rev1 8409 0.92476489 646411 1.321199143 646411 4.120115774 646411 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_659403_659682 3L 659403 659682 CG17129 CG17129 4172 1.327063741 659513 2.511777302 659513 4.561505065 659513 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_668797_669277 3L 668797 669277 CG3371 CG3371 TSS overlap 1.852664577 668862 3.087794433 668862 4.397973951 668862 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_674036_674380 3L 674036 674380 CG12015 RabX6 TSS overlap 1.363636364 674082 2.068522484 674082 3.076700434 674082 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_709774_710810 3L 709774 710810 CG13897 CG13897 11842 1.274817137 710164 6.585653105 710164 4.861070912 710164 0 1 1 0 0 0 0 0 0 0 0 0 7 6 4 4 2 2 1 1 0 0 0 0 3L_715719_716225 3L 715719 716225 CG13897 CG13897 6427 1.762800418 715829 2.99143469 716059 4.133140376 716059 0 0 0 0 0 0 4 3 3 3 3 3 1 0 0 0 0 0 0 0 0 0 0 0 3L_718850_719380 3L 718850 719380 CG13897 CG13897 3272 1.531870428 718932 3.310492505 718932 5.208393632 718932 0 1 1 0 0 0 1 1 1 1 1 0 2 2 2 2 2 1 1 1 1 1 1 1 3L_722704_723957 3L 722704 723957 CG13897 CG13897 52 4.75862069 723274 19.04389722 723274 26.55571635 723274 1 0 1 0 0 0 4 4 4 4 3 1 6 5 4 4 3 3 1 1 0 0 0 0 3L_724840_725148 3L 724840 725148 CR32482 tRNA:M-i:61D 2178 1.432601881 724978 2.510706638 724978 4.341534009 724978 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_725651_729215 3L 725651 729215 CR32482 tRNA:M-i:61D TSS overlap 4.510971787 726875 7.884368308 726875 9.493487699 726875 1 0 1 0 0 0 4 3 2 2 2 2 10 9 5 5 3 2 2 0 0 0 0 0 3L_732910_733380 3L 732910 733380 CG1007 emc TSS overlap 3.299895507 733220 1.870449679 732949 5.76845152 733220 1 0 1 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 3L_734703_735425 3L 734703 735425 CG1007 emc transcript overlap 3.087774295 735157 2.735546039 735157 3.296671491 735157 0 0 0 0 0 0 0 0 0 0 0 0 3 3 3 1 1 1 1 0 0 0 0 0 3L_736881_737721 3L 736881 737721 CG1007 emc 3943 5.945663532 737307 4.062098501 737028 7.247467438 737307 1 0 1 0 0 0 2 1 1 1 1 1 3 3 3 3 3 3 2 2 2 1 1 1 3L_739608_739878 3L 739608 739878 CG1007 emc 6670 1.119122257 739714 2.796573876 739714 4.643994211 739714 0 0 0 0 0 0 3 2 2 2 2 2 1 1 1 1 1 1 0 0 0 0 0 0 3L_746008_746808 3L 746008 746808 CR32480 CR32480 6227 1.544409613 746116 2.456102784 746396 4.79739508 746396 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 1 1 0 3L_765713_766268 3L 765713 766268 CR32481 CR32481 11818 0.856844305 766098 2.587794433 765823 3.552821997 765823 0 0 0 0 0 0 3 3 2 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_768054_768301 3L 768054 768301 CG32341 CG32341 12149 1.118077325 768133 2.792291221 768133 2.319826339 768133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_771332_771851 3L 771332 771851 CG32341 CG32341 8599 1.319749216 771681 2.523554604 771442 4.481910275 771442 0 0 0 0 0 0 2 2 2 1 0 0 1 1 1 1 0 0 2 2 2 1 0 0 3L_855610_856436 3L 855610 856436 CG32479 CG32479 transcript overlap 4.616509927 856005 4.898286938 856005 7.111432706 856005 1 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_888653_889738 3L 888653 889738 CG13905 CG13905 2190 2.66353187 889321 6.374732334 889321 4.89869754 889321 1 0 1 0 0 0 2 2 2 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 3L_891882_892789 3L 891882 892789 CG13906 nerfin-1 TSS overlap 1.463949843 891992 2.829764454 892272 5.387843705 892272 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_943468_943733 3L 943468 943733 CG1086 Glut1 transcript overlap 1.142110763 943578 2.125267666 943578 3.189580318 943578 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_1092003_1092836 3L 1092003 1092836 CG32334 CG32334 3045 2.095088819 1092349 3.386509636 1092349 4.306801737 1092592 0 0 0 0 0 0 3 3 2 2 0 0 3 3 3 2 0 0 0 0 0 0 0 0 3L_1150885_1151165 3L 1150885 1151165 CG9102 bab2 transcript overlap 1.267502612 1150995 2.359743041 1150995 1.726483357 1150995 0 0 0 0 0 0 1 1 1 1 1 0 2 2 2 2 2 0 1 0 0 0 0 0 3L_1286377_1286842 3L 1286377 1286842 CG9149 CG9149 TSS overlap 2.461859979 1286413 2.647751606 1286693 3.97829233 1286693 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_1342853_1343396 3L 1342853 1343396 CG9181 Ptp61F transcript overlap 1.119122257 1343241 2.479657388 1342963 3.79015919 1342963 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_1393693_1394236 3L 1393693 1394236 CG9181 Ptp61F transcript overlap 1.237199582 1394067 1.706638116 1393803 4.649782923 1394067 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_1439750_1440303 3L 1439750 1440303 CG1004 rho 7021 2.056426332 1440134 4.734475375 1440134 8.641099855 1440134 1 0 1 0 0 1 "Ip et al., 1992" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_1445100_1446447 3L 1445100 1446447 CG1004 rho 877 9.863113898 1445485 16.30620985 1445485 28.56150507 1445485 1 0 1 1 0 1 "Ip et al., 1992" 3 2 2 2 1 0 4 4 4 4 4 0 5 3 3 1 0 0 3L_1446882_1447229 3L 1446882 1447229 CG1004 rho 95 1.405433647 1447133 2.189507495 1447133 3.698986975 1447133 0 0 0 0 0 1 "Ip et al., 1992" 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_1462564_1463204 3L 1462564 1463204 CG33166 CG32331 stet CG32331 transcript overlap 2.131661442 1462750 3.131691649 1462750 5.541244573 1462750 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 1 0 3L_1499906_1500750 3L 1499906 1500750 CG12086 CG1009 cue Psa transcript overlap 2.101358412 1500669 3.579229122 1500567 5.13024602 1500567 1 0 1 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_1664988_1665494 3L 1664988 1665494 CG13930 CG13930 8751 1.836990596 1665073 2.264453961 1665073 2.555716353 1665073 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_1700886_1701443 3L 1700886 1701443 CG2086 drpr transcript overlap 1.307210031 1700993 3.701284797 1700993 5.654124457 1701273 0 1 1 0 0 0 2 2 2 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_1718881_1719716 3L 1718881 1719716 CG2069 Oseg4 TSS overlap 1.145245559 1719266 5.840471092 1719128 8.396526773 1719266 0 1 1 0 0 0 3 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 3L_1729706_1730599 3L 1729706 1730599 CG13921 CG13921 TSS overlap 1.714733542 1730429 3.882226981 1729816 4.729377713 1729816 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 4 1 1 1 0 0 3L_1756179_1756726 3L 1756179 1756726 CG13933 CG13933 transcript overlap 0.96969697 1756285 2.755888651 1756285 3.519536903 1756285 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_1778004_1778257 3L 1778004 1778257 CG32315 CG1977 dlt alpha-Spec transcript overlap 1.487983281 1778094 1.98608137 1778094 4.240231548 1778094 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_2212456_2212735 3L 2212456 2212735 CG13809 osm-1 443 0.760710554 2212566 2.006423983 2212566 3.492040521 2212566 0 0 0 0 0 0 3 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 3L_2420910_2422897 3L 2420910 2422897 CG32306 CG32306 transcript overlap 2.421107628 2422163 5 2422443 6.748191027 2422163 1 0 1 0 0 0 "Levine lab, unpublished" 2 2 2 2 2 1 2 1 1 1 1 0 4 2 1 0 0 0 3L_2460539_2461069 3L 2460539 2461069 CG33232 CG16761 CG33232 Cyp4d20 transcript overlap 0.792058516 2460643 3.805139186 2460643 6.897250362 2460643 0 1 1 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 2 2 0 0 0 0 3L_2466234_2467042 3L 2466234 2467042 CG33232 CG33232 transcript overlap 2.059561129 2466619 6.154175589 2466757 9.299565847 2466757 1 0 1 0 0 0 3 3 3 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3L_2563009_2563526 3L 2563009 2563526 CG16973 msn transcript overlap 1.680250784 2563087 2.48608137 2563087 2.670043415 2563356 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_2566261_2566504 3L 2566261 2566504 CG16973 msn transcript overlap 1.909090909 2566334 3.031049251 2566334 2.885672938 2566334 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_2611103_2611926 3L 2611103 2611926 CG12002 Pxn transcript overlap 1.227795193 2611759 1.966809422 2611759 4.704775687 2611479 0 0 0 0 0 0 4 0 0 0 0 0 5 0 0 0 0 0 2 0 0 0 0 0 3L_2725879_2726436 3L 2725879 2726436 CG1262 CG32296 Acp62F Mrtf transcript overlap 1.119122257 2725986 2.882226981 2725986 3.746743849 2725986 0 0 0 0 0 0 3 3 0 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 3L_2777145_2777780 3L 2777145 2777780 CG2083 CG2083 transcript overlap 1.034482759 2777255 2.323340471 2777589 3.959479016 2777487 0 0 0 0 0 0 4 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_2851279_2852868 3L 2851279 2852868 CG9973 CG9973 2374 1.445141066 2852705 4.690578158 2852148 4.908827786 2852425 0 0 0 0 0 1 "Biemar et al., 2006" 1 1 1 1 0 0 4 2 2 2 1 1 0 0 0 0 0 0 3L_2863961_2866611 3L 2863961 2866611 CG9973 CG9973 8719 3.31138976 2866187 6.609207709 2866187 9.201157742 2866187 1 0 1 0 0 1 "Biemar et al., 2006" 2 0 0 0 0 0 2 1 1 0 0 0 6 1 1 1 1 1 3L_2891374_2891621 3L 2891374 2891621 CG1066 Shab transcript overlap 1.929989551 2891484 1.010706638 2891484 3.104196816 2891484 0 0 0 0 0 0 3 2 2 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_3020623_3022008 3L 3020623 3022008 CG2162 CG2162 transcript overlap 1.943573668 3021564 3.7751606 3021564 6.80463097 3021564 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_3035737_3036176 3L 3035737 3036176 CG1271 CG1271 TSS overlap 8.879832811 3035847 3.239828694 3035847 4.911722142 3035847 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_3074388_3074746 3L 3074388 3074746 CR32908 snRNA:U5:63BC 55 2.673981191 3074578 1.525695931 3074578 2.444283647 3074578 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_3126983_3127102 3L 3126983 3127102 CG11537 CG11537 TSS overlap 1.235109718 3127017 1.394004283 3127017 0.619392185 3127017 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_3147812_3149190 3L 3147812 3149190 CG14962 CG14962 transcript overlap 3.091954023 3148197 11.00642398 3148197 17.50795948 3148197 1 0 1 0 0 0 7 5 2 0 0 0 4 3 1 1 1 0 2 0 0 0 0 0 3L_3162472_3162955 3L 3162472 3162955 CG12734 CG12734 transcript overlap 10.33960293 3162512 2.682012848 3162792 4.892908828 3162792 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_3302906_3303456 3L 3302906 3303456 CG12016 CG12016 TSS overlap 4.626959248 3303007 2.801927195 3303287 4.709117221 3303007 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 3L_3320687_3320967 3L 3320687 3320967 CG32268 dro6 793 1.76384535 3320797 3.667023555 3320797 6.0723589 3320797 0 1 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_3387415_3387967 3L 3387415 3387967 CG1921 sty transcript overlap 1.576802508 3387819 6.583511777 3387539 11.9536903 3387539 0 1 1 0 0 0 5 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_3392148_3393969 3L 3392148 3393969 CG1921 sty transcript overlap 2.409613375 3393829 7.037473233 3393612 9.529667149 3393612 1 0 1 0 0 0 3 0 0 0 0 0 9 1 0 0 0 0 3 0 0 0 0 0 3L_3436344_3436890 3L 3436344 3436890 CG10840 eIF5B transcript overlap 2.191222571 3436728 2.404710921 3436728 2.930535456 3436728 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_3499376_3500232 3L 3499376 3500232 CG10579 Eip63E transcript overlap 1.925809822 3499448 3.915417559 3500004 3.369030391 3499448 0 0 0 0 0 0 5 4 1 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 3L_3770448_3770950 3L 3770448 3770950 CG32264 CG32264 transcript overlap 0.821316614 3770774 2.331905782 3770560 3.314037627 3770560 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_3786610_3786885 3L 3786610 3786885 CG32264 CG32264 1790 1.131661442 3786720 2.007494647 3786720 2.798842258 3786720 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_3797679_3798142 3L 3797679 3798142 CG1065 Scsalpha TSS overlap 3.811912226 3797699 2.908993576 3797979 3.962373372 3797979 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_3829182_3829771 3L 3829182 3829771 CG1072 Awh TSS overlap 1.928944619 3829537 5.301927195 3829537 3.19536903 3829537 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_3926811_3928147 3L 3926811 3928147 CG14982 CG14982 transcript overlap 1.242424242 3927776 4.576017131 3927481 8.850940666 3927481 0 1 1 0 0 0 6 6 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_3947389_3947778 3L 3947389 3947778 CG12605 CG12605 transcript overlap 1.551724138 3947688 1.777301927 3947481 2.668596237 3947688 0 0 0 0 0 0 1 1 0 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 3L_4060503_4060766 3L 4060503 4060766 CG14994 Gad1 transcript overlap 1.262277952 4060624 2.632762313 4060624 3.97105644 4060624 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4092074_4093337 3L 4092074 4093337 CG14992 Ack transcript overlap 1.876698015 4092412 2.817987152 4092912 3.373371925 4092912 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 3L_4153565_4154216 3L 4153565 4154216 CG1333 Ero1L TSS overlap 1.854754441 4153605 3.255888651 4153833 7.060781476 4153833 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4177354_4177628 3L 4177354 4177628 CG1308 CG1308 189 1.621734587 4177458 2.595289079 4177458 4.24602026 4177458 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_4213739_4214849 3L 4213739 4214849 CG15009 ImpL2 transcript overlap 1.333333333 4214129 9.592077088 4214409 11.31693198 4214409 0 1 1 0 0 0 2 0 0 0 0 0 3 3 2 1 0 0 1 1 1 1 1 0 3L_4235649_4237074 3L 4235649 4237074 CG15010 ago transcript overlap 5.084639498 4236356 3.033190578 4236838 3.785817656 4235847 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4391380_4392457 3L 4391380 4392457 CG11347 CG11347 transcript overlap 1.214211076 4392314 6.276231263 4391770 8.030390738 4391770 0 1 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 3L_4451258_4451802 3L 4451258 4451802 CG32249 CG32249 transcript overlap 1.032392894 4451647 2.038543897 4451368 3.943560058 4451368 0 0 0 0 0 0 9 1 0 0 0 0 5 0 0 0 0 0 1 1 1 1 0 0 3L_4527140_4527946 3L 4527140 4527946 CG11357 CG11357 transcript overlap 3.013584117 4527776 4.947537473 4527776 4.960926194 4527776 0 0 0 0 0 0 3 1 0 0 0 0 5 3 2 0 0 0 4 1 0 0 0 0 3L_4531344_4532787 3L 4531344 4532787 CG11357 CG11357 transcript overlap 1.732497388 4531795 3.033190578 4531515 5.386396527 4531515 0 1 1 0 0 0 5 2 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 3L_4536406_4536894 3L 4536406 4536894 CG32245 CG32245 40 1.703239289 4536516 2.370449679 4536516 4.670043415 4536516 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_4594625_4594878 3L 4594625 4594878 CG7524 Src64B transcript overlap 2.190177638 4594735 1.620985011 4594735 3.507959479 4594735 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_4603684_4603930 3L 4603684 4603930 CG32246 CG7524 CG32246 Src64B transcript overlap 0.94984326 4603791 2.435760171 4603791 3.421128799 4603791 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4649411_4650006 3L 4649411 4650006 CG18296 axo transcript overlap 1.39184953 4649515 2.86509636 4649515 4.98552822 4649515 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 2 0 0 0 0 0 3L_4675376_4676209 3L 4675376 4676209 CG32239 Gef64C transcript overlap 3.476489028 4675766 9.647751606 4675766 14.0130246 4675766 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_4676971_4678546 3L 4676971 4678546 CG32239 Gef64C transcript overlap 3.458725183 4677361 4.749464668 4677361 11.93777135 4677361 1 0 1 0 0 0 2 2 1 0 0 0 1 1 1 0 0 0 3 1 1 1 1 0 3L_4840594_4840874 3L 4840594 4840874 CG32235 CG32235 443 0.997910136 4840704 3.311563169 4840704 5.353111433 4840704 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_4957118_4957595 3L 4957118 4957595 CG7503 Con 99 9.254963427 4957156 4.069593148 4957426 8.037626628 4957426 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5160531_5161049 3L 5160531 5161049 CG32423 CG32423 transcript overlap 1.457680251 5160607 2.210920771 5160885 2.191027496 5160885 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5365940_5366188 3L 5365940 5366188 CG10633 CG10633 9172 1.34169279 5366018 6.155246253 5366018 9.146164978 5366018 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5566063_5566528 3L 5566063 5566528 CG10594 spo TSS overlap 1.594566353 5566173 1.964668094 5566173 3.192474674 5566173 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_5594800_5595640 3L 5594800 5595640 CG5249 Blimp-1 9290 1.845350052 5595190 5.420770878 5595190 8.836468886 5595190 0 1 1 0 0 0 2 2 1 1 1 0 3 1 1 1 1 0 0 0 0 0 0 0 3L_5604443_5605243 3L 5604443 5605243 CG5249 Blimp-1 TSS overlap 2.512016719 5604802 7.161670236 5604802 10.66714906 5604802 1 0 1 0 0 0 3 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_5607710_5608831 3L 5607710 5608831 CG5249 Blimp-1 transcript overlap 1.841170324 5608374 7.582441113 5608374 11.37047757 5608374 0 1 1 0 0 0 2 2 2 1 1 0 2 2 1 0 0 0 0 0 0 0 0 0 3L_5628438_5628777 3L 5628438 5628777 CG17334 lin-28 TSS overlap 1.75862069 5628681 2.805139186 5628681 2.04341534 5628548 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5744070_5744623 3L 5744070 5744623 CG5505 mule transcript overlap 1.762800418 5744180 2.546038544 5744453 2.866859624 5744180 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 0 0 3L_5763327_5763863 3L 5763327 5763863 CG10542 CG10542 4275 1.253918495 5763693 2.293361884 5763693 3.767004342 5763693 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_5809480_5810317 3L 5809480 5810317 CG10491 vn transcript overlap 4.986415883 5809864 10.31905782 5809864 13.14616498 5809864 1 0 1 1 0 1 "Markstein et al., 2004" 2 1 1 1 1 0 2 1 1 1 1 0 4 3 2 2 1 0 3L_5830079_5831473 3L 5830079 5831473 CG10491 vn 10518 1.234064786 5831303 2.976445396 5830749 3.683068017 5830469 0 0 0 0 0 1 "Markstein et al., 2004" 1 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3L_5833367_5833647 3L 5833367 5833647 CG5568 CG5568 11802 1.206896552 5833477 1.774089936 5833477 2.638205499 5833477 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 3L_5854919_5856342 3L 5854919 5856342 CG13287 CG13287 12 1.831765935 5855305 8.033190578 5855305 6.675832127 5855305 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_5876097_5876294 3L 5876097 5876294 CG32412 CG32412 transcript overlap 1.347962382 5876207 1.563169165 5876207 2.251808973 5876207 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_5950159_5950567 3L 5950159 5950567 CG10479 CG10479 207 2.875653083 5950199 2.413276231 5950199 3.154848046 5950405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_5965316_5965593 3L 5965316 5965593 CG32406 CG32406 5568 1.437826541 5965426 2.967880086 5965426 3.211287988 5965426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_5966690_5968533 3L 5966690 5968533 CG32406 CG32406 2628 1.501567398 5967077 3.859743041 5967916 4.808972504 5967077 0 0 0 0 0 0 2 2 2 1 1 0 7 5 5 5 2 1 2 0 0 0 0 0 3L_5970163_5970693 3L 5970163 5970693 CG32406 CG32406 468 1.491118077 5970273 3.517130621 5970273 5.616497829 5970273 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_6078502_6078763 3L 6078502 6078763 CG7018 Ets65A transcript overlap 0.929989551 6078612 2.124197002 6078612 2.403762663 6078612 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_6154333_6154619 3L 6154333 6154619 CG10274 CG10274 transcript overlap 2.4169279 6154441 4.117773019 6154441 5.564399421 6154441 1 0 1 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 2 1 1 0 0 0 3L_6282699_6283445 3L 6282699 6283445 CG32401 Or65a 11113 2.258098224 6282809 4 6283089 6.908827786 6283089 1 0 1 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_6318771_6318911 3L 6318771 6318911 CG32399 CG32399 transcript overlap 1.154649948 6318797 1.200214133 6318797 2.018813314 6318797 0 0 0 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_6371045_6371595 3L 6371045 6371595 CG32398 CG32398 27437 1.084639498 6371435 3.086723769 6371155 4.06512301 6371155 0 0 0 0 0 0 3 2 2 1 1 0 3 2 2 2 0 0 1 1 0 0 0 0 3L_6462960_6463501 3L 6462960 6463501 CG8270 CG8270 transcript overlap 1.710553814 6463070 2.672376874 6463070 4.215629522 6463070 0 0 0 0 0 0 3 3 2 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_6677589_6677804 3L 6677589 6677804 CG10121 SP1173 123 2.038662487 6677639 1.69379015 6677639 3.484804631 6677639 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_6704865_6705483 3L 6704865 6705483 CG32394 CG32394 transcript overlap 1.320794148 6705322 1.869379015 6704975 3.505065123 6704975 0 0 0 0 0 0 4 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3L_6706968_6707238 3L 6706968 6707238 CG32394 CG32394 transcript overlap 0.843260188 6707065 2.779443255 6707065 3.98552822 6707065 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_6715934_6716492 3L 6715934 6716492 CG32393 dikar transcript overlap 2.612330199 6716322 3.812633833 6716044 3.218523878 6716322 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 1 0 3L_6724736_6725269 3L 6724736 6725269 CG10107 CG10107 transcript overlap 1.259143156 6724771 1.794432548 6724771 3.447178003 6725100 0 0 0 0 0 0 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_6738447_6739290 3L 6738447 6739290 CG32392 CG32392 1254 1.010449321 6738837 2.056745182 6738837 3.19536903 6738557 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3L_6740873_6741705 3L 6740873 6741705 CG32392 CG32392 3680 1.50261233 6741255 4.964668094 6741255 7.756874096 6741255 0 1 1 0 0 0 2 1 1 1 1 0 3 3 3 2 1 0 0 0 0 0 0 0 3L_6787574_6788108 3L 6787574 6788108 CG10037 vvl 23467 1.317659352 6787938 3.647751606 6787662 6.001447178 6787662 0 1 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_6794649_6795759 3L 6794649 6795759 CG10037 vvl 30542 2.368861024 6795328 4.061027837 6795048 7.293777135 6795048 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 3L_6796539_6797216 3L 6796539 6797216 CG10037 vvl 32432 1.861024033 6796929 4.23875803 6796929 2.968162084 6797153 0 0 0 0 0 0 1 1 1 1 1 1 2 2 1 1 1 1 2 0 0 0 0 0 3L_6801621_6802138 3L 6801621 6802138 CG10037 vvl 37514 1.795193312 6801720 3.572805139 6801720 5.646888567 6801720 0 1 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 3L_6802636_6802915 3L 6802636 6802915 CG10037 vvl 38529 2.078369906 6802745 3.139186296 6802745 3.013024602 6802745 0 0 0 0 0 0 2 2 2 2 1 0 2 2 2 2 1 0 1 0 0 0 0 0 3L_6877793_6878312 3L 6877793 6878312 CG10078 Prat2 10493 1.83908046 6878144 3.611349036 6878144 9.434153401 6878144 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3L_7107427_7108749 3L 7107427 7108749 CG8624 melt TSS overlap 3.141065831 7108019 5.56745182 7108283 11.63531114 7108474 1 0 1 0 0 0 3 2 1 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 3L_7111691_7112531 3L 7111691 7112531 CG8624 melt transcript overlap 2.306165099 7112361 3.798715203 7112361 5.881331404 7112361 1 0 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 2 2 1 0 0 0 3L_7297029_7297649 3L 7297029 7297649 CG8606 CG8605 RhoGEF4 CG8605 TSS overlap 2.475444096 7297421 3.386509636 7297209 4.153400868 7297421 0 0 0 0 0 0 3 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 3L_7302488_7302958 3L 7302488 7302958 CG8602 CG8602 TSS overlap 1.743991641 7302730 2.91006424 7302730 5.617945007 7302730 0 1 1 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_7342273_7342726 3L 7342273 7342726 CG8582 Sh3beta transcript overlap 1.410658307 7342354 2.325481799 7342470 3.15195369 7342354 0 0 0 0 0 0 2 1 1 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_7344415_7344567 3L 7344415 7344567 CG8580 bhr transcript overlap 2.404388715 7344491 1.662740899 7344491 1.549927641 7344491 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_7389897_7390148 3L 7389897 7390148 CR33948 pncr015:3L 9627 2.024033438 7390007 2.843683084 7390007 5.254703329 7390007 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_7393199_7393955 3L 7393199 7393955 CR33948 pncr015:3L 12929 1.004179728 7393790 2.37366167 7393572 3.571635311 7393309 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3L_7493128_7493641 3L 7493128 7493641 CG32372 CG32372 TSS overlap 4.680250784 7493364 5.661670236 7493364 6.858176556 7493364 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 3L_7615423_7615779 3L 7615423 7615779 CG7506 CG7506 TSS overlap 1.520376176 7615603 1.867237687 7615463 3.083936324 7615463 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_7618441_7618721 3L 7618441 7618721 CG7506 CG7506 2848 1.832810867 7618551 2.479657388 7618551 3.916063676 7618551 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3L_7725882_7726447 3L 7725882 7726447 CG32373 CG32373 transcript overlap 0.951933124 7726011 3.51391863 7726011 5.740955137 7726011 0 1 1 0 0 0 2 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_7882679_7884680 3L 7882679 7884680 CG8114 pbl transcript overlap 4.535005225 7884476 9.405781585 7883349 9.344428365 7884214 1 0 1 0 0 0 6 6 4 4 3 2 5 4 4 3 3 2 1 1 1 0 0 0 3L_7886038_7886563 3L 7886038 7886563 CG8281 CG8281 TSS overlap 3.881922675 7886261 3.163811563 7886261 4.400868307 7886261 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_7956984_7957264 3L 7956984 7957264 CG7892 nmo transcript overlap 1.198537095 7957094 1.707708779 7957094 2.725036179 7957094 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_7958539_7959027 3L 7958539 7959027 CG7892 nmo transcript overlap 1.623824451 7958649 2.457173448 7958857 2.907380608 7958857 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_7961774_7962854 3L 7961774 7962854 CG7892 nmo transcript overlap 1.850574713 7962412 4.675588865 7962412 6.547033285 7962412 0 1 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 3L_8057831_8058340 3L 8057831 8058340 CG7565 CG7565 7400 1.111807732 8057941 3.149892934 8057941 5.098408104 8058170 0 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_8084140_8084551 3L 8084140 8084551 CG7927 CG7927 TSS overlap 2.402298851 8084268 3.953961456 8084268 6.413892909 8084268 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_8163128_8163611 3L 8163128 8163611 CG7986 Atg18 transcript overlap 1.71368861 8163446 3.174518201 8163238 4.467438495 8163446 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 3L_8248171_8248449 3L 8248171 8248449 CG33274 CG33274 transcript overlap 1.641588297 8248279 1.86509636 8248279 5.11577424 8248279 0 1 1 0 0 0 1 0 0 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3L_8385261_8385730 3L 8385261 8385730 CG7161 Oseg1 TSS overlap 6.878787879 8385652 3.043897216 8385371 4.94211288 8385371 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_8430157_8430715 3L 8430157 8430715 CG6964 Gug transcript overlap 3.351097179 8430545 5.728051392 8430545 8.489146165 8430545 1 0 1 0 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 3L_8443441_8443970 3L 8443441 8443970 CG6964 Gug transcript overlap 1.528735632 8443545 2.779443255 8443817 4.541244573 8443817 0 0 0 0 0 0 2 1 0 0 0 0 4 4 4 3 1 0 2 1 0 0 0 0 3L_8480641_8481472 3L 8480641 8481472 CG6694 CG6694 2222 1.908045977 8480748 5.497858672 8481023 7.752532562 8481023 0 1 1 0 0 0 4 1 1 0 0 0 3 2 1 1 0 0 3 0 0 0 0 0 3L_8626947_8628056 3L 8626947 8628056 CG6486 CG6486 3476 1.379310345 8627886 5.14882227 8627057 6.125904486 8627057 0 1 1 0 0 0 2 1 1 0 0 0 2 2 2 2 1 1 2 2 1 1 0 0 3L_8644120_8645432 3L 8644120 8645432 CG6494 h 4274 1.65830721 8645265 5.072805139 8644987 9.615050651 8644987 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3L_8649141_8650163 3L 8649141 8650163 CG6494 h TSS overlap 1.862068966 8649997 4.02248394 8649489 9.836468886 8649606 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_8690147_8690691 3L 8690147 8690691 CG33162 SrpRbeta 3473 1.576802508 8690257 2.588865096 8690257 4.056439942 8690257 0 0 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3L_8799301_8799589 3L 8799301 8799589 CG4974 dally 1864 1.318704284 8799411 2.76124197 8799411 3.230101302 8799411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_8800099_8800659 3L 8800099 8800659 CG4974 dally 794 1.032392894 8800489 2.040685225 8800209 3.727930535 8800209 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_8803491_8804296 3L 8803491 8804296 CG4974 dally transcript overlap 1.632183908 8803601 4.622055675 8803601 6.946454414 8803601 0 1 1 0 0 0 1 1 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_8806639_8807425 3L 8806639 8807425 CG4974 dally transcript overlap 1.401253918 8806749 2.643468951 8807013 5.377713459 8807013 0 1 1 0 0 0 1 1 1 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3L_8960607_8960951 3L 8960607 8960951 CG5068 CG5068 TSS overlap 1.317659352 8960781 2.808351178 8960781 4.316931983 8960781 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_8977410_8977946 3L 8977410 8977946 CG5093 Doc3 1199 1.770114943 8977520 9.295503212 8977520 15.65557164 8977520 0 1 1 0 0 1 "Stathopoulos et al., 2002 " 1 1 1 1 1 0 3 3 3 2 2 0 1 1 0 0 0 0 3L_8978566_8979328 3L 8978566 8979328 CG5093 Doc3 TSS overlap 1.908045977 8978899 7.082441113 8978899 8.740955137 8978899 0 1 1 0 0 1 "Stathopoulos et al., 2002 " 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_8984398_8984650 3L 8984398 8984650 CG5194 CG5194 600 1.781609195 8984480 2.58993576 8984480 4.555716353 8984480 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 2 1 0 0 0 0 0 0 0 3L_9002806_9003601 3L 9002806 9003601 CG5187 Doc2 8450 4.664576803 9003196 6.510706638 9003196 7.687409551 9003196 1 0 1 0 0 0 2 1 1 0 0 0 2 1 1 1 1 0 1 1 1 1 1 0 3L_9016068_9016617 3L 9016068 9016617 CG5133 Doc1 transcript overlap 1.392894462 9016449 2.442184154 9016175 5.830680174 9016449 0 1 1 0 0 1 "Stathopoulos et al., 2002 " 1 1 1 1 1 0 1 1 1 1 1 1 0 0 0 0 0 0 3L_9017443_9018000 3L 9017443 9018000 CG5133 Doc1 transcript overlap 1.187042842 9017830 4.36509636 9017830 7.450072359 9017830 0 1 1 0 0 1 "Stathopoulos et al., 2002 " 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3L_9087588_9087854 3L 9087588 9087854 CG4760 bol transcript overlap 2.235109718 9087698 3.200214133 9087698 2.476121563 9087698 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_9108357_9108744 3L 9108357 9108744 CG4665 Dhpr TSS overlap 4.308254963 9108644 2.99143469 9108504 4.557163531 9108504 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_9290994_9291264 3L 9290994 9291264 CG32042 PGRP-LA 17015 0.774294671 9291094 2.037473233 9291094 3.208393632 9291094 0 0 0 0 0 0 3 3 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_9342490_9343050 3L 9342490 9343050 CG4452 CG4452 transcript overlap 1.807732497 9342600 2.334047109 9342880 4.176555716 9342600 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_9395200_9395727 3L 9395200 9395727 CG3967 CG3967 transcript overlap 0.947753396 9395310 2.678800857 9395585 5.176555716 9395585 0 1 1 0 0 0 3 3 2 2 2 1 2 2 2 2 2 0 0 0 0 0 0 0 3L_9420741_9421763 3L 9420741 9421763 CG3529 CG3529 TSS overlap 2.225705329 9420824 3.675588865 9420925 5.727930535 9420925 1 0 1 0 0 0 3 1 1 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 3L_9435373_9436211 3L 9435373 9436211 CG32043 CG32043 transcript overlap 2.242424242 9435761 5.094218415 9435761 5.814761216 9436041 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_9437349_9437599 3L 9437349 9437599 CG32043 CG32043 transcript overlap 2.880877743 9437441 4.490364026 9437441 3.457308249 9437441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_9441671_9442088 3L 9441671 9442088 CG32043 CG32043 transcript overlap 1.731452456 9441920 2.221627409 9441920 3.890014472 9441920 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3L_9465007_9465995 3L 9465007 9465995 CG32037 CG32037 transcript overlap 2.916405434 9465355 12.52997859 9465355 21.93198263 9465355 1 0 1 0 0 0 1 1 1 1 1 0 2 2 1 1 0 0 1 0 0 0 0 0 3L_9478498_9478783 3L 9478498 9478783 CG3424 path transcript overlap 1.979101358 9478609 1.225910064 9478609 3.162083936 9478609 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_9652280_9652913 3L 9652280 9652913 CG32045 fry TSS overlap 1.580982236 9652390 3.334047109 9652390 3.959479016 9652390 0 0 0 0 0 0 2 2 2 2 2 0 4 2 0 0 0 0 1 0 0 0 0 0 3L_9700721_9700864 3L 9700721 9700864 CG18177 CG18177 13 2.192267503 9700766 2.668094218 9700766 4.027496382 9700766 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_9792315_9792648 3L 9792315 9792648 CG33205 CG33205 transcript overlap 0.983281087 9792468 2.550321199 9792468 3.646888567 9792468 0 0 0 0 0 0 1 1 1 1 1 0 2 1 1 1 0 0 0 0 0 0 0 0 3L_9829348_9830547 3L 9829348 9830547 CG6721 Gap1 122 2.584117032 9829862 9.559957173 9829862 11.78147612 9830142 1 0 1 0 0 0 2 0 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 3L_10073769_10074279 3L 10073769 10074279 CG6640 CG6640 transcript overlap 1.320794148 10074149 2.917558887 10073879 5.696092619 10073879 0 1 1 0 0 0 3 3 3 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_10082278_10082760 3L 10082278 10082760 CG6640 CG6640 7450 1.877742947 10082388 2.881156317 10082388 4.092619392 10082388 0 0 0 0 0 0 2 2 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 3L_10262981_10263541 3L 10262981 10263541 CG14157 Or67d 15830 4.719958203 10263371 2.140256959 10263091 3.00723589 10263091 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3L_10304486_10305303 3L 10304486 10305303 CR33586 mir-276b 10693 2.21107628 10304876 8.344753747 10304876 10.71490593 10304876 1 0 1 0 0 0 3 1 1 1 0 0 3 3 3 2 1 0 3 1 1 0 0 0 3L_10499640_10500188 3L 10499640 10500188 CG32062 CG32062 transcript overlap 2.036572623 10499747 4.98608137 10499747 3.05065123 10499747 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_10529036_10529519 3L 10529036 10529519 CG32062 CG32062 transcript overlap 1.694879833 10529146 3.118843683 10529349 4.192474674 10529349 0 0 0 0 0 0 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 3L_10543138_10543682 3L 10543138 10543682 CG32062 CG32062 transcript overlap 1.197492163 10543515 2.076017131 10543515 3.206946454 10543515 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3L_10627715_10627964 3L 10627715 10627964 CG32066 CG32066 transcript overlap 1.474399164 10627815 2.125267666 10627815 1.807525326 10627815 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_10630353_10630619 3L 10630353 10630619 CG32066 CG32066 transcript overlap 1.60292581 10630463 3.838329764 10630463 4.777134588 10630463 0 0 0 0 0 0 1 0 0 0 0 0 5 3 2 0 0 0 1 0 0 0 0 0 3L_10633401_10633902 3L 10633401 10633902 CG32066 CG32066 transcript overlap 1.409613375 10633510 1.995717345 10633510 3.441389291 10633790 0 0 0 0 0 0 2 2 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_10831641_10831781 3L 10831641 10831781 CG7958 tna 58 1.675983437 10831690 2.263035921 10831690 1.99875 10831690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_10832368_10833307 3L 10832368 10833307 CG7958 tna transcript overlap 1.520703934 10832784 3.348783314 10832784 5.8 10832784 0 1 1 0 0 0 1 1 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 3L_10834064_10835403 3L 10834064 10835403 CG7958 tna transcript overlap 2.870600414 10834954 6.039397451 10834954 8.3 10834954 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 2 0 0 0 0 3L_10836530_10837389 3L 10836530 10837389 CG7958 tna transcript overlap 1.754658385 10836639 2.537659328 10836956 3.27125 10836639 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_10940404_10940977 3L 10940404 10940977 CG32070 CG32070 2406 1.399585921 10940794 2.931633835 10940794 4.56 10940794 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_11003873_11004131 3L 11003873 11004131 CG32081 CG32081 2347 1.427536232 11003989 2.188876014 11003989 2.69125 11003989 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_11143625_11144455 3L 11143625 11144455 CG7616 CG7616 TSS overlap 1.711180124 11144063 2.637311703 11144063 4.6875 11144063 0 0 0 0 0 0 3 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_11188525_11190076 3L 11188525 11190076 CG18490 CG18490 transcript overlap 9.087991718 11189682 3.161066049 11188834 4.7225 11189795 0 0 0 0 0 0 5 4 1 0 0 0 4 3 1 0 0 0 2 1 0 0 0 0 3L_11210792_11212639 3L 11210792 11212639 CG6185 CG6185 907 2.01552795 11211930 5.235225956 11211930 7.11 11212190 1 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 3L_11216774_11218453 3L 11216774 11218453 CG6185 CG6185 6889 3.105590062 11217513 4.697566628 11218005 5.85875 11217513 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3L_11220130_11220459 3L 11220130 11220459 CG7590 scyl 5797 1.275362319 11220297 2.345307068 11220297 1.63875 11220297 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_11225495_11226374 3L 11225495 11226374 CG7590 scyl TSS overlap 2.359213251 11226182 2.728852839 11225605 3.39375 11225902 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 3L_11233952_11236115 3L 11233952 11236115 CG7590 scyl 7696 1.594202899 11235401 3.274623407 11235911 5.2475 11235911 0 1 1 0 0 0 6 3 1 0 0 0 5 4 3 0 0 0 1 0 0 0 0 0 3L_11316584_11316860 3L 11316584 11316860 CG6168 CG6168 20918 1.726708075 11316690 2.965237543 11316690 3.3325 11316690 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_11330750_11331592 3L 11330750 11331592 CG6163 CG6163 7240 2.110766046 11331140 2.981460023 11331140 4.19 11331140 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_11409612_11410171 3L 11409612 11410171 CG6149 CG6149 transcript overlap 1.871635611 11410001 2.431054461 11410001 2.55 11410001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_11413199_11413456 3L 11413199 11413456 CG6149 CG6149 transcript overlap 5.237060041 11413293 3.463499421 11413293 4.26625 11413293 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_11466450_11466713 3L 11466450 11466713 CG7533 chrb transcript overlap 1.5 11466559 2.241019699 11466559 2.6225 11466559 0 0 0 0 0 0 1 1 1 1 1 1 3 3 3 1 1 1 0 0 0 0 0 0 3L_11527262_11527496 3L 11527262 11527496 CG11711 Mob1 transcript overlap 1.775362319 11527334 2.456546929 11527334 3.38125 11527334 0 0 0 0 0 0 1 1 1 1 1 1 2 2 2 1 1 1 0 0 0 0 0 0 3L_11528570_11528842 3L 11528570 11528842 CG11711 Mob1 transcript overlap 1.419254658 11528680 3.31170336 11528680 5.20625 11528680 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3L_11561142_11561759 3L 11561142 11561759 CG6097 rt TSS overlap 1.881987578 11561252 1.714947856 11561252 2.3625 11561661 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_11666636_11667382 3L 11666636 11667382 CG14135 CG14135 589 7.857142857 11667237 2.756662804 11666746 4.42875 11667026 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_11667767_11668825 3L 11667767 11668825 CG14135 CG14135 1720 21.42960663 11668157 1.412514484 11668157 4.01125 11668157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_11694753_11695071 3L 11694753 11695071 CG7314 Bmcp TSS overlap 3.483436853 11694831 1.838933951 11694831 2.3725 11694831 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3L_11805224_11805473 3L 11805224 11805473 CG5940 CycA transcript overlap 2.775362319 11805309 2.837775203 11805309 2.70125 11805309 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_11899133_11899952 3L 11899133 11899952 CG5718 CG5718 429 3.160455487 11899280 2.097334878 11899280 3.56375 11899502 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 3L_11900854_11901684 3L 11900854 11901684 CG5718 CG5718 2150 1.648033126 11901237 2.083429896 11901237 3.5 11901237 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_12056609_12057724 3L 12056609 12057724 CG5661 Sema-5c 877 1.252587992 12056999 2.012746234 12057274 2.405 12057274 0 0 0 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3L_12073328_12073807 3L 12073328 12073807 CG17154 CG17154 10738 1.84057971 12073438 3.480880649 12073438 1.835 12073674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_12105978_12106420 3L 12105978 12106420 CG11534 CG11534 TSS overlap 1.304347826 12106251 2.5202781 12106127 3.67 12106127 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_12251511_12251842 3L 12251511 12251842 CG10426 CG10426 TSS overlap 1.801242236 12251602 2.514484357 12251602 2.79625 12251602 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_12264312_12265147 3L 12264312 12265147 CG4328 CG4328 1762 1.180124224 12264698 2.610660487 12264698 3.23 12264698 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_12310752_12310959 3L 12310752 12310959 CG10418 CG10418 transcript overlap 1.474120083 12310789 3.222479722 12310789 0.875 12310789 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_12343954_12344225 3L 12343954 12344225 CG4357 Ncc69 transcript overlap 1.400621118 12344064 1.330243337 12344064 1.7375 12344064 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_12401022_12401561 3L 12401022 12401561 CG10704 toe transcript overlap 1.531055901 12401132 2.669756663 12401132 4.26625 12401132 0 0 0 0 0 0 4 4 4 1 1 0 2 2 1 1 1 0 1 0 0 0 0 0 3L_12478549_12479113 3L 12478549 12479113 CG10682 vih transcript overlap 1.645962733 12478663 3.062572422 12478663 3.1225 12478663 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 1 0 1 1 1 0 0 0 3L_12479634_12480463 3L 12479634 12480463 CG10654 CG10654 1194 1.661490683 12479744 4.235225956 12480024 5.47 12480024 0 1 1 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_12499105_12499364 3L 12499105 12499364 CG4153 eIF-2beta transcript overlap 1.188405797 12499215 1.805330243 12499215 2.61875 12499215 0 0 0 0 0 0 2 2 2 2 2 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_12539948_12540760 3L 12539948 12540760 CG10632 CG10632 transcript overlap 4.111801242 12540338 6.819235226 12540338 9.5425 12540338 1 0 1 0 0 0 3 2 2 2 2 2 2 2 2 2 2 2 3 2 1 0 0 0 3L_12616421_12616942 3L 12616421 12616942 CG32111 CG32111 transcript overlap 1.210144928 12616531 2.217844728 12616531 2.9725 12616531 0 0 0 0 0 0 2 1 0 0 0 0 2 2 2 1 1 0 2 0 0 0 0 0 3L_12641392_12642112 3L 12641392 12642112 CG10601 mirr 25583 1.578674948 12641703 4.1599073 12641703 2.93625 12641703 0 0 0 0 0 0 4 2 2 2 0 0 3 3 2 2 0 0 0 0 0 0 0 0 3L_12646198_12646982 3L 12646198 12646982 CG10601 mirr 20713 1.073498965 12646308 2.325608343 12646308 2.39 12646308 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_12651207_12651959 3L 12651207 12651959 CG10601 mirr 15736 2.014492754 12651522 4.943221321 12651522 5.50125 12651522 1 0 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 3L_12657072_12657608 3L 12657072 12657608 CG10601 mirr 10087 2.065217391 12657182 2.276940904 12657182 3.68625 12657182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_12667021_12667637 3L 12667021 12667637 CG10601 mirr 58 1.963768116 12667117 2.523754345 12667397 2.6125 12667397 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 3L_12671446_12671988 3L 12671446 12671988 CG10601 mirr transcript overlap 1.297101449 12671820 2.886442642 12671555 3.06375 12671555 0 0 0 0 0 0 3 2 2 2 1 1 2 2 2 0 0 0 1 0 0 0 0 0 3L_12679413_12679683 3L 12679413 12679683 CG10601 mirr transcript overlap 1.080745342 12679523 1.677867903 12679523 2.01 12679523 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_12695658_12696181 3L 12695658 12696181 CG10753 snRNP69D 12374 2.101449275 12696012 2.118192352 12696012 2.85375 12696012 0 0 0 0 0 0 2 2 2 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_12814198_12814733 3L 12814198 12814733 CG10960 CG10960 transcript overlap 0.947204969 12814308 1.485515643 12814308 2.26625 12814308 0 0 0 0 0 0 3 0 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 3L_12823909_12824038 3L 12823909 12824038 CG10948 CG10948 transcript overlap 1.565217391 12823949 2.19235226 12823949 2.855 12823949 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_13002713_13003043 3L 13002713 13003043 CG11271 RpS12 transcript overlap 1.213250518 13002823 2.265353418 13002823 2.6725 13002823 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_13023638_13026311 3L 13023638 13026311 CG11279 CG11279 2667 1.209109731 13023932 2.590961761 13023932 3.96375 13023932 0 0 0 0 0 0 6 4 4 4 1 0 5 3 3 2 1 1 2 1 1 1 0 0 3L_13027593_13028153 3L 13027593 13028153 CG11279 CG11279 6622 1.449275362 13027983 1.940903824 13027983 2.65625 13027983 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_13047912_13048472 3L 13047912 13048472 CG14116 CG14116 12086 1.556935818 13048302 2.338354577 13048302 2.76875 13048302 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_13051252_13051792 3L 13051252 13051792 CG17300 CG17300 9444 1.245341615 13051642 1.434530707 13051362 2.93125 13051642 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_13055125_13056237 3L 13055125 13056237 CG17300 CG17300 4999 1.263975155 13056067 2.378910776 13056067 3.23125 13055507 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_13058156_13058964 3L 13058156 13058964 CG17300 CG17300 2272 2.800207039 13058546 5.855156431 13058546 6.10125 13058546 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_13063216_13063835 3L 13063216 13063835 CG11251 CG11251 TSS overlap 0.773291925 13063325 2.785631518 13063605 4.43625 13063605 0 0 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 3L_13070127_13070660 3L 13070127 13070660 CG32118 CG32118 1538 1.14699793 13070520 1.910776362 13070520 3.54 13070520 0 0 0 0 0 0 2 2 2 1 0 0 1 1 1 1 0 0 1 1 0 0 0 0 3L_13078568_13078808 3L 13078568 13078808 CG32118 CG32118 6370 1.375776398 13078669 1.929316338 13078669 2.62125 13078669 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3L_13081371_13082140 3L 13081371 13082140 CG11280 trn 6080 1.16873706 13081481 1.967555041 13081761 3.2275 13081761 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_13088198_13088563 3L 13088198 13088563 CG11280 trn TSS overlap 2.586956522 13088475 2.054461182 13088475 2.05375 13088475 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_13093798_13094611 3L 13093798 13094611 CG11280 trn 5578 2.483436853 13094171 6.147161066 13094171 10.1 13094171 1 0 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_13109119_13109624 3L 13109119 13109624 CG33262 CG33262 592 4.400621118 13109491 1.714947856 13109229 2.1725 13109229 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_13189820_13190387 3L 13189820 13190387 CR32127 CR32127 1764 2.305383023 13189938 4.625724218 13189938 6.2475 13189938 1 0 1 0 0 0 3 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_13199907_13200456 3L 13199907 13200456 CG11282 caps 2180 1.449275362 13200293 1.91193511 13200293 2.81875 13200293 0 0 0 0 0 0 2 2 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 3L_13269835_13270348 3L 13269835 13270348 CG17673 Acp70A 5234 1.275362319 13270211 1.987253766 13270211 3.37875 13270211 0 0 0 0 0 0 1 1 1 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 3L_13320461_13321761 3L 13320461 13321761 CG17687 CG17687 1412 2.446169772 13321592 1.972190035 13321314 2.46875 13321314 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 4 1 0 0 0 0 3L_13324017_13324570 3L 13324017 13324570 CG17687 CG17687 transcript overlap 2.051759834 13324400 3.44032445 13324400 4.26125 13324400 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_13351992_13353308 3L 13351992 13353308 CG14112 CG14111 SNCF CG14111 TSS overlap 5.216356108 13352648 5.988412514 13352382 9.40875 13352382 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 3L_13364340_13364804 3L 13364340 13364804 CG10191 CG10191 405 0.934782609 13364634 2 13364634 3.115 13364354 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_13367026_13367552 3L 13367026 13367552 CG10191 CG10191 3091 0.937888199 13367129 2.11239861 13367409 3.09125 13367409 0 0 0 0 0 0 3 3 3 0 0 0 2 2 2 0 0 0 1 0 0 0 0 0 3L_13382521_13383260 3L 13382521 13383260 CG10222 CG10222 3140 1.715320911 13382600 2.48783314 13382880 3.2025 13382880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_13486992_13487488 3L 13486992 13487488 CG10711 CG10743 CG10711 CG10743 TSS overlap 2.866459627 13487178 2.300115875 13487039 3.10875 13487318 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_13535957_13536274 3L 13535957 13536274 CG12478 bru-3 transcript overlap 1.51552795 13536066 2.681344148 13536142 3.73125 13536142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3L_13588996_13589276 3L 13588996 13589276 CG12478 bru-3 transcript overlap 1.354037267 13589106 2.157589803 13589106 3 13589106 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_13640960_13641475 3L 13640960 13641475 CG12478 bru-3 264 3.747412008 13641306 3.747392816 13641306 4.4575 13641306 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 3L_13648540_13649339 3L 13648540 13649339 CG12478 bru-3 7844 1.673913043 13648897 3.427578216 13648897 3.49875 13648897 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_13756027_13756268 3L 13756027 13756268 CG8757 CG8757 51231 1.114906832 13756106 2.31170336 13756106 2.8225 13756106 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_13802653_13803184 3L 13802653 13803184 CG8757 CG8757 4315 1.469979296 13802763 1.741599073 13802763 2.4125 13802763 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_13828422_13829262 3L 13828422 13829262 CG8745 CG8745 transcript overlap 1.827122153 13828812 4.702201622 13828532 5.16875 13828532 0 1 1 0 0 0 4 2 1 1 1 0 5 4 2 2 2 0 2 2 1 0 0 0 3L_13887798_13888299 3L 13887798 13888299 CG8865 Rgl transcript overlap 1.576604555 13888156 3.191193511 13888156 4.45 13888156 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_13889986_13890563 3L 13889986 13890563 CG8865 Rgl TSS overlap 1.980331263 13890084 4.792584009 13890084 7.33875 13890084 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 3L_13894504_13894623 3L 13894504 13894623 CG9206 Gl 25 3.635610766 13894534 1.58400927 13894534 2.10125 13894534 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_13989090_13989346 3L 13989090 13989346 CG32133 CG32133 transcript overlap 1.269151139 13989197 1.170336037 13989197 2.30375 13989197 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14016783_14017061 3L 14016783 14017061 CG6833 CG6833 transcript overlap 1.267080745 14016891 1.863267671 14016891 2.88125 14016891 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_14036814_14037124 3L 14036814 14037124 CG6760 l(3)70Da 27 2.395445135 14037024 2.028968714 14037024 3.19 14037024 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 3L_14041685_14042280 3L 14041685 14042280 CG32134 btl transcript overlap 1.572463768 14041782 2.16801854 14041782 2.8325 14042062 0 0 0 0 0 0 2 2 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_14096951_14097427 3L 14096951 14097427 CG32139 Sox21b 368 1.788819876 14097061 1.644264195 14097061 2.445 14097061 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3L_14100690_14101248 3L 14100690 14101248 CG32139 Sox21b 4107 1.412008282 14101080 2.561993048 14101080 2.9275 14101080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14114971_14116048 3L 14114971 14116048 CG32139 Sox21b 18388 2.958592133 14115610 5.123986095 14115081 8.2225 14115081 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3L_14116856_14117151 3L 14116856 14117151 CG32139 Sox21b 20273 1.545548654 14116977 2.48783314 14116977 2.4875 14116977 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14118710_14119528 3L 14118710 14119528 CG32139 Sox21b 22127 4.756728778 14119090 4.914252607 14119090 6.58125 14119090 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 2 2 2 1 0 3L_14120659_14120900 3L 14120659 14120900 CG5893 D 22979 0.714285714 14120769 1.889918888 14120769 2.46125 14120769 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_14154753_14155262 3L 14154753 14155262 CG5842 nan TSS overlap 1.440993789 14155131 1.910776362 14154862 2.865 14154862 0 0 0 0 0 0 2 2 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_14156166_14156992 3L 14156166 14156992 CG33991 nuf transcript overlap 1.575569358 14156840 3.967555041 14156560 7.17625 14156560 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_14159325_14160147 3L 14159325 14160147 CG33991 nuf transcript overlap 1.223602484 14159736 2.701042874 14159435 3.31125 14159736 0 0 0 0 0 0 2 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 3L_14160387_14160934 3L 14160387 14160934 CG33991 nuf transcript overlap 1.32194617 14160485 1.83198146 14160485 2.625 14160485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3L_14161414_14162160 3L 14161414 14162160 CG33991 nuf transcript overlap 1.355072464 14161518 3.10428737 14161798 3.26625 14161798 0 0 0 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_14170383_14171091 3L 14170383 14171091 CG33991 nuf transcript overlap 1.785714286 14170685 2.763615295 14170561 3.925 14170561 0 0 0 0 0 0 2 0 0 0 0 0 6 1 0 0 0 0 1 1 0 0 0 0 3L_14176911_14177194 3L 14176911 14177194 CG33991 nuf transcript overlap 0.967908903 14177024 1.749710313 14177024 2.555 14177024 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3L_14192977_14193555 3L 14192977 14193555 CG33991 nuf transcript overlap 1.093167702 14193168 1.849362688 14193168 2.365 14193168 0 0 0 0 0 0 2 1 1 1 0 0 2 2 1 1 0 0 1 1 0 0 0 0 3L_14241220_14241981 3L 14241220 14241981 CG17697 fz transcript overlap 1.425465839 14241570 3.789107764 14241570 6.07375 14241570 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_14263288_14263766 3L 14263288 14263766 CG17697 fz transcript overlap 1.211180124 14263607 2.08806489 14263607 3.21625 14263607 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_14314251_14314708 3L 14314251 14314708 CG17697 fz transcript overlap 1.14389234 14314351 2.702201622 14314560 4.2475 14314560 0 0 0 0 0 0 2 2 0 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 3L_14413836_14414086 3L 14413836 14414086 CG9598 CG9598 31245 2.35610766 14413918 2.853997683 14413918 3.97625 14413918 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14417643_14418725 3L 14417643 14418725 CG9598 CG9598 35052 1.729813665 14418050 7.389339513 14418050 10.38125 14418050 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_14419585_14420677 3L 14419585 14420677 CG9598 CG9598 36994 5.202898551 14420227 9.585168019 14420227 11.41375 14420227 1 0 1 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 4 2 2 2 2 0 3L_14513408_14513931 3L 14513408 14513931 CG9238 CG9238 transcript overlap 1.994824017 14513508 2.303592121 14513508 1.9725 14513786 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_14514437_14514886 3L 14514437 14514886 CG9238 CG9238 transcript overlap 1.693581781 14514547 2.461181924 14514753 3.69 14514547 0 0 0 0 0 0 3 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_14533072_14533405 3L 14533072 14533405 CG13479 CG13479 TSS overlap 1.602484472 14533177 2.257242178 14533299 2.46125 14533299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_14607273_14607811 3L 14607273 14607811 CG32146 dlp transcript overlap 1.35610766 14607377 2.922363847 14607377 4.595 14607377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14608653_14609439 3L 14608653 14609439 CG32146 dlp transcript overlap 1.303312629 14609269 3.901506373 14609269 5.50375 14609269 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_14613546_14614321 3L 14613546 14614321 CG32146 dlp transcript overlap 1.212215321 14613926 2.378910776 14613667 3.9075 14613667 0 0 0 0 0 0 2 2 1 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 3L_14716252_14717337 3L 14716252 14717337 CG33261 Trl transcript overlap 3.406832298 14716905 10.51332561 14716641 15.29 14716641 1 0 1 0 0 0 4 4 2 2 1 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_14720630_14720899 3L 14720630 14720899 CG33261 Trl transcript overlap 1.899585921 14720729 2.696407879 14720729 2.0375 14720729 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14723013_14723155 3L 14723013 14723155 CG33261 Trl transcript overlap 1.726708075 14723055 1.685979143 14723055 1.4025 14723055 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14723295_14724827 3L 14723295 14724827 CG33261 Trl transcript overlap 1.829192547 14724659 3.033603708 14724118 4.1075 14724118 0 0 0 0 0 0 2 2 1 1 1 1 4 3 1 1 1 1 2 1 1 0 0 0 3L_14741352_14741696 3L 14741352 14741696 CG9311 CG9311 TSS overlap 1.810559006 14741403 1.730011587 14741403 2.4575 14741403 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_14750839_14751094 3L 14750839 14751094 CG5295 CG5295 transcript overlap 1.873706004 14750948 1.906141367 14750948 2.1625 14750948 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_14909109_14909938 3L 14909109 14909938 CG13465 CG13465 TSS overlap 3.785714286 14909499 3.304750869 14909499 5.4025 14909499 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_14911048_14911873 3L 14911048 14911873 CG12487 BobA TSS overlap 3.829192547 14911158 3.644264195 14911423 6.44 14911423 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 3L_14918281_14919089 3L 14918281 14919089 CG12487 BobA 6910 1.654244306 14918659 3.269988413 14918659 3.54625 14918659 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14921462_14922298 3L 14921462 14922298 CG12487 BobA 10091 1.784679089 14922128 3.641946698 14921572 5.13375 14921572 0 1 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3L_14923895_14924465 3L 14923895 14924465 CG5185 Tom 10141 1.172877847 14924284 2.564310545 14924284 3.29625 14924284 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_14925674_14926198 3L 14925674 14926198 CG5185 Tom 8408 1.526915114 14926029 3.205098494 14926029 3.6675 14926029 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 3L_14927916_14928471 3L 14927916 14928471 CG5185 Tom 6135 1.592132505 14928304 2.865585168 14928304 2.7375 14928304 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 3L_14929925_14930742 3L 14929925 14930742 CG5185 Tom 3864 1.055900621 14930277 3.045191194 14930277 4.29375 14930277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_14932886_14935033 3L 14932886 14935033 CG5185 Tom TSS overlap 7.901656315 14933830 10.68366165 14933830 12.98125 14933556 1 0 1 0 0 0 2 2 2 2 1 1 2 1 1 0 0 0 4 1 1 0 0 0 3L_14937109_14939212 3L 14937109 14939212 CG3096 Brd TSS overlap 3.320910973 14938589 5.783314021 14938589 8.31375 14938589 1 0 1 0 0 0 3 2 2 2 1 0 3 3 2 2 1 0 2 1 0 0 0 0 3L_14940007_14941805 3L 14940007 14941805 CG3396 Ocho 107 6.228778468 14941411 5.60023175 14940315 7.52875 14940315 1 0 1 0 0 0 2 2 1 1 0 0 4 2 0 0 0 0 2 1 1 0 0 0 3L_14942184_14943281 3L 14942184 14943281 CG3349 CG3349 2087 4.947204969 14942555 2.245654693 14942831 3.485 14942831 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_14964928_14965116 3L 14964928 14965116 CG17166 mRpL39 5 5.804347826 14964973 2.009269988 14964973 2.5225 14964973 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15004570_15006144 3L 15004570 15006144 CG11551 ind 1685 4.055900621 15004949 6.790266512 15004949 9.25 15004949 1 0 1 1 0 1 "Weiss et al.,1998, unpublished" 1 1 1 1 1 0 1 0 0 0 0 0 1 1 1 1 0 0 3L_15009168_15009503 3L 15009168 15009503 CG11551 ind TSS overlap 2.298136646 15009277 2.480880649 15009277 2.28125 15009389 0 0 0 0 0 1 "Weiss et al.,1998, unpublished" 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_15086862_15087072 3L 15086862 15087072 CG17081 CG16959 CG17081 CG16959 transcript overlap 1.401656315 15086902 2.107763615 15086902 2.53375 15086902 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_15107034_15107302 3L 15107034 15107302 CG6988 Pdi transcript overlap 4.640786749 15107138 2.161066049 15107138 2.2775 15107138 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_15128284_15129060 3L 15128284 15129060 CG7011 CG7011 TSS overlap 1.002070393 15128800 6.461181924 15128674 9.4975 15128674 0 1 1 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_15188584_15189628 3L 15188584 15189628 CG6890 Tollo 11272 1.403726708 15189194 2.914252607 15189194 4.055 15189194 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3L_15197953_15198786 3L 15197953 15198786 CG6890 Tollo 2114 2.170807453 15198339 4.916570104 15198339 8.265 15198339 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3L_15199651_15201144 3L 15199651 15201144 CG6890 Tollo TSS overlap 1.552795031 15201071 6.884125145 15200527 7.68625 15200527 0 1 1 0 0 0 3 3 2 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_15227179_15228504 3L 15227179 15228504 CG6890 Tollo 26279 1.795031056 15227554 3.717265353 15227554 5.53125 15227554 0 1 1 0 0 0 1 1 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 3L_15278387_15279139 3L 15278387 15279139 CG7255 CG7255 8759 1.376811594 15278717 2.492468134 15278717 3.1925 15278717 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 2 1 0 1 1 1 0 0 0 3L_15285642_15286967 3L 15285642 15286967 CG7250 Toll-6 14992 1.792960663 15285989 4.07184241 15285989 4.89 15285989 0 0 0 0 0 0 1 0 0 0 0 0 2 2 2 1 0 0 1 0 0 0 0 0 3L_15295267_15295541 3L 15295267 15295541 CG7250 Toll-6 6418 1.017598344 15295371 1.792584009 15295371 2.335 15295371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15319996_15320267 3L 15319996 15320267 CG7250 Toll-6 18037 1.263975155 15320106 1.609501738 15320106 1.9775 15320106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15473962_15474521 3L 15473962 15474521 CG17962 Z600 TSS overlap 2.083850932 15474352 2.420625724 15474072 3.66375 15474072 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_15482027_15482587 3L 15482027 15482587 CG13454 CG13454 TSS overlap 2.701863354 15482417 3.253765933 15482417 4.39375 15482417 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3L_15528503_15529371 3L 15528503 15529371 CG7427 CG7427 TSS overlap 2.260869565 15528625 3.858632677 15528896 5.25625 15528896 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3L_15570426_15570920 3L 15570426 15570920 CG32149 RhoGAP71E transcript overlap 3.715320911 15570536 1.702201622 15570743 2.51375 15570536 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_15587230_15587738 3L 15587230 15587738 CG33209 CG7372 comm3 CG7372 transcript overlap 1.237060041 15587577 1.957126304 15587340 2.98625 15587577 0 0 0 0 0 0 4 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 3L_15603827_15604100 3L 15603827 15604100 CG33209 comm3 6118 0.935817805 15603930 1.675550406 15603930 2.30125 15603930 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_15631384_15631944 3L 15631384 15631944 CG7325 Eig71Ek 4877 0.84679089 15631494 2.456546929 15631494 3.21875 15631494 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_15665167_15665474 3L 15665167 15665474 CG7554 comm2 59 1.185300207 15665232 2.07995365 15665232 2.045 15665232 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_15668436_15669550 3L 15668436 15669550 CG7554 comm2 3328 1.262939959 15669100 5.746234067 15668820 6.6725 15668820 0 1 1 0 0 0 2 0 0 0 0 0 4 3 3 0 0 0 0 0 0 0 0 0 3L_15676415_15677990 3L 15676415 15677990 CG7554 comm2 11307 1.654244306 15676521 3.377752028 15677641 4.4125 15677641 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 3L_15697206_15698069 3L 15697206 15698069 CG17943 comm 3524 1.750517598 15697588 2.619930475 15697588 3.41875 15697588 0 0 0 0 0 0 1 1 1 1 0 0 3 3 3 3 3 0 0 0 0 0 0 0 3L_15711342_15711615 3L 15711342 15711615 CG17943 comm 17660 0.880952381 15711452 1.570104287 15711452 1.96125 15711452 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15721387_15722512 3L 15721387 15722512 CG17943 comm 27705 1.422360248 15722335 2.420625724 15721775 2.7275 15722055 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_15725411_15725691 3L 15725411 15725691 CG17943 comm 31729 1.618012422 15725521 2.039397451 15725521 2.61 15725521 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_15764214_15764730 3L 15764214 15764730 CG6244 CG6244 8947 1.00931677 15764561 1.739281576 15764314 2.25625 15764561 0 0 0 0 0 0 1 1 0 0 0 0 4 2 0 0 0 0 1 0 0 0 0 0 3L_15767425_15767945 3L 15767425 15767945 CG6244 CG6244 5732 1.782608696 15767535 3.60023175 15767535 5.9075 15767535 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15770132_15770642 3L 15770132 15770642 CG6244 CG6244 3035 5.086956522 15770472 4.356894554 15770472 6.03125 15770472 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_15772289_15773094 3L 15772289 15773094 CG6244 CG6244 583 4.032091097 15772663 4.818076477 15772663 5.91875 15772663 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_15918239_15918375 3L 15918239 15918375 CG6117 Pka-C3 transcript overlap 1.501035197 15918277 1.516801854 15918277 1.46125 15918277 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15918883_15919653 3L 15918883 15919653 CG6117 Pka-C3 transcript overlap 2.145962733 15918992 2.438006952 15919483 3.81875 15919483 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3L_15939411_15939677 3L 15939411 15939677 CG5942 brm transcript overlap 1.34679089 15939519 1.753186559 15939519 2.66125 15939519 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_15951508_15952068 3L 15951508 15952068 CG5949 DNApol-delta transcript overlap 2.714285714 15951618 3.339513326 15951618 2.46125 15951898 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 2 1 1 1 1 0 0 0 0 3L_15976343_15977055 3L 15976343 15977055 CG5841 mib1 transcript overlap 2.287784679 15976968 2.275782155 15976453 2.71 15976453 0 0 0 0 0 0 3 2 2 1 1 0 3 2 2 1 0 0 2 0 0 0 0 0 3L_15977816_15978672 3L 15977816 15978672 CG5841 mib1 745 0.989648033 15978198 3.806488992 15978198 7.13875 15978198 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_15982415_15983773 3L 15982415 15983773 CG13076 Notum 4966 1.522774327 15982525 2.819235226 15983074 3.235 15983074 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_15988574_15988921 3L 15988574 15988921 CG13076 Notum TSS overlap 2.132505176 15988830 2.052143685 15988830 2.485 15988830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_15990128_15991700 3L 15990128 15991700 CG13076 Notum transcript overlap 2.099378882 15990790 4.812282735 15990790 9.23125 15990790 1 0 1 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_15992488_15993009 3L 15992488 15993009 CG13076 Notum transcript overlap 3.304347826 15992867 2.619930475 15992567 4.1025 15992567 0 0 0 0 0 0 2 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_16014216_16014490 3L 16014216 16014490 CG12284 th transcript overlap 1.220496894 16014326 1.89571263 16014326 2.49875 16014326 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_16015262_16015538 3L 16015262 16015538 CG12284 th transcript overlap 1.968944099 16015372 2.127462341 16015372 1.33875 16015372 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_16029857_16030474 3L 16029857 16030474 CG32156 Mbs transcript overlap 1.016563147 16030253 2.780996524 16030253 3.8425 16030253 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_16079142_16079953 3L 16079142 16079953 CG5444 Taf4 transcript overlap 2.253623188 16079227 2.937427578 16079227 3.48 16079507 0 0 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_16155790_16156327 3L 16155790 16156327 CG33687 CG33687 6800 0.953416149 16155900 1.813441483 16156157 2.435 16156157 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_16222591_16222871 3L 16222591 16222871 CG13054 CG13054 297 1.330227743 16222701 2.075318656 16222701 2.45 16222701 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_16258393_16258662 3L 16258393 16258662 CG4962 CG4962 2137 1.166666667 16258492 1.574739282 16258492 2.2175 16258492 0 0 0 0 0 0 3 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_16269892_16270447 3L 16269892 16270447 CG13043 CG13043 678 1.781573499 16270002 2.996523754 16270002 5.11375 16270002 0 1 1 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 3L_16346602_16346898 3L 16346602 16346898 CG4753 CG4753 TSS overlap 2.263975155 16346814 1.586326767 16346814 2.31875 16346705 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_16366310_16366868 3L 16366310 16366868 CG13035 CG13035 994 1.883022774 16366698 1.82387022 16366420 3.2675 16366420 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_16373080_16373542 3L 16373080 16373542 CG4609 fax transcript overlap 4.284679089 16373166 3.135573581 16373166 2.575 16373166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_16375479_16376479 3L 16375479 16376479 CG4609 fax transcript overlap 3.538302277 16376091 3.173812283 16375813 5.3275 16375813 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3L_16438428_16439215 3L 16438428 16439215 CG33158 CG4531 CG33158 argos transcript overlap 1.022774327 16438787 2.046349942 16438508 2.615 16438787 0 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_16440643_16441511 3L 16440643 16441511 CG33158 CG4531 argos transcript overlap 2.380952381 16440753 4.367323291 16441061 8.35125 16441061 1 0 1 0 0 0 3 2 2 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 3L_16450462_16450999 3L 16450462 16450999 CG33158 CG33158 transcript overlap 2.198757764 16450571 1.834298957 16450838 2.885 16450838 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_16454293_16455083 3L 16454293 16455083 CG33158 CG33158 transcript overlap 1.466873706 16454839 3.986095017 16454839 6.8075 16454839 0 1 1 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3L_16456050_16457152 3L 16456050 16457152 CG33158 CG33158 transcript overlap 1.738095238 16456702 4.901506373 16456702 8.74 16456702 0 1 1 0 0 0 2 2 2 2 1 1 3 2 2 2 0 0 0 0 0 0 0 0 3L_16529266_16529826 3L 16529266 16529826 CG4123 Mipp1 transcript overlap 1.556935818 16529656 2.699884125 16529656 3.88875 16529656 0 0 0 0 0 0 3 3 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_16604363_16604840 3L 16604363 16604840 CG4032 Abl transcript overlap 1.269151139 16604441 1.91193511 16604441 2.82625 16604441 0 0 0 0 0 0 2 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3L_16675992_16676501 3L 16675992 16676501 CG3849 Lasp transcript overlap 1.620082816 16676102 3.232908459 16676102 4.64375 16676102 0 0 0 0 0 0 1 1 1 1 1 0 2 2 2 1 1 1 1 0 0 0 0 0 3L_16677587_16678078 3L 16677587 16678078 CG9695 Dab 323 1.917184265 16677697 2.040556199 16677927 2.72375 16677927 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_16678603_16679120 3L 16678603 16679120 CG9695 Dab transcript overlap 1.381987578 16678982 2.497103129 16678982 2.9425 16678982 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_16731433_16731901 3L 16731433 16731901 CG9704 Nrt transcript overlap 1.604554865 16731731 2.33603708 16731731 2.35375 16731731 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_16735141_16735651 3L 16735141 16735651 CG9704 Nrt transcript overlap 1.547619048 16735511 1.990730012 16735511 2.26125 16735251 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_16737933_16739270 3L 16737933 16739270 CG9704 Nrt transcript overlap 3.459627329 16739100 3.222479722 16738570 4.0825 16738570 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_16739521_16741406 3L 16739521 16741406 CG9704 Nrt transcript overlap 3.452380952 16741250 2.480880649 16740993 3.73875 16740993 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 0 2 1 1 0 0 0 3L_16742058_16742270 3L 16742058 16742270 CG13025 CG9704 CG13025 Nrt transcript overlap 3.429606625 16742100 0.814600232 16742100 2.0325 16742100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_16970283_16970808 3L 16970283 16970808 CG32167 CG32167 TSS overlap 1.073498965 16970638 1.57589803 16970638 2.15125 16970638 0 0 0 0 0 0 8 2 2 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 3L_16975865_16976730 3L 16975865 16976730 CG6664 CG6664 4709 2.157349896 16976280 4.764774044 16976280 6.86 16976280 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_17124646_17124918 3L 17124646 17124918 CG32169 CG32169 transcript overlap 1.076604555 17124749 1.488991889 17124749 2.225 17124749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_17343356_17343891 3L 17343356 17343891 CG6445 Cad74A transcript overlap 1.560041408 17343441 2.052143685 17343441 2.08125 17343721 0 0 0 0 0 0 2 2 1 1 1 0 2 2 1 0 0 0 0 0 0 0 0 0 3L_17344663_17345252 3L 17344663 17345252 CG6445 Cad74A TSS overlap 1.672877847 17345113 2.646581692 17344709 4.39375 17344709 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_17366691_17366815 3L 17366691 17366815 CG3897 blot transcript overlap 0.774327122 17366723 1.33603708 17366723 2.1625 17366723 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_17372600_17373146 3L 17372600 17373146 CG3897 blot transcript overlap 1.52173913 17372698 2.005793743 17372698 3.3925 17372976 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_17380816_17382142 3L 17380816 17382142 CG3897 blot transcript overlap 1.802277433 17381050 5.10428737 17381050 9.125 17381050 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_17461179_17461979 3L 17461179 17461979 CG7571 Oatp74D transcript overlap 1.741200828 17461809 3.710312862 17461546 5.105 17461809 0 1 1 0 0 0 4 3 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_17469587_17469899 3L 17469587 17469899 CG7571 Oatp74D transcript overlap 1.452380952 17469681 2.027809965 17469681 2.85 17469752 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 1 0 3L_17470398_17470639 3L 17470398 17470639 CG7571 Oatp74D transcript overlap 1.17494824 17470480 1.894553882 17470480 2.83125 17470480 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_17475754_17476004 3L 17475754 17476004 CG7571 Oatp74D transcript overlap 1.410973085 17475835 2.165701043 17475835 2.145 17475835 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_17498274_17498960 3L 17498274 17498960 CG7555 Nedd4 transcript overlap 1.596273292 17498641 2.535341831 17498641 3.55875 17498641 0 0 0 0 0 0 2 1 1 1 1 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_17520853_17521888 3L 17520853 17521888 CG6292 CycT transcript overlap 2.638716356 17521091 2.800695249 17521091 3.71625 17521091 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_17615039_17615820 3L 17615039 17615820 CG32177 CG32179 CG32177 Krn transcript overlap 1.931677019 17615650 3.74391657 17615371 5.20625 17615371 0 1 1 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_17618322_17618882 3L 17618322 17618882 CG32177 CG32179 CG32177 Krn transcript overlap 1.317805383 17618712 2.74391657 17618712 3.76625 17618432 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_17634228_17635065 3L 17634228 17635065 CR33683 snmRNA:641 239 4.188405797 17634601 4.41599073 17634601 6.34875 17634601 1 0 1 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 2 1 0 0 0 0 3L_17932149_17932691 3L 17932149 17932691 CG8127 Eip75B transcript overlap 2.274327122 17932522 2.342989571 17932522 2.70375 17932522 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_17951428_17952211 3L 17951428 17952211 CG8127 Eip75B transcript overlap 7.841614907 17951787 3.219003476 17951787 5.64375 17951787 1 0 1 0 0 0 2 2 2 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3L_17964686_17965262 3L 17964686 17965262 CG8127 Eip75B transcript overlap 1.571428571 17964794 3.519119351 17965092 2.425 17965092 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3L_17980418_17980960 3L 17980418 17980960 CG8127 Eip75B transcript overlap 0.956521739 17980807 1.957126304 17980528 2.91875 17980528 0 0 0 0 0 0 2 2 1 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 3L_17999490_17999983 3L 17999490 17999983 CG8127 Eip75B transcript overlap 0.867494824 17999560 2.901506373 17999560 3.2 17999560 0 0 0 0 0 0 4 3 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3L_18023326_18023605 3L 18023326 18023605 CG8127 Eip75B transcript overlap 1.469979296 18023436 1.769409038 18023436 2.71375 18023436 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_18103610_18103851 3L 18103610 18103851 CG13695 gk 812 1.538302277 18103718 1.733487833 18103718 2.2425 18103718 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_18104368_18104917 3L 18104368 18104917 CG13695 gk TSS overlap 1.372670807 18104612 2.444959444 18104750 4.44375 18104750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_18140118_18140664 3L 18140118 18140664 CG5123 W transcript overlap 1.769151139 18140225 2.536500579 18140225 3.28125 18140225 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_18150735_18152372 3L 18150735 18152372 CG5123 W TSS overlap 2.300207039 18151461 2.473928158 18151461 3.6325 18150902 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_18181872_18182690 3L 18181872 18182690 CG7320 CG7320 14774 1.955486542 18182262 3.106604867 18182262 2.635 18182262 0 0 0 0 0 0 2 2 2 0 0 0 4 4 4 3 3 0 1 0 0 0 0 0 3L_18238167_18238460 3L 18238167 18238460 CG7313 CheA75a 20820 1.520703934 18238277 2.638470452 18238277 3.035 18238277 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 1 0 0 0 0 0 0 0 3L_18261790_18262293 3L 18261790 18262293 CG5103 CG5103 2153 1.032091097 18261900 2.828505214 18261900 3.3325 18261900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_18271803_18272923 3L 18271803 18272923 CG4345 grim 2130 1.618012422 18272193 2.952491309 18272193 3.615 18272193 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 0 0 2 0 0 0 0 0 3L_18283513_18284048 3L 18283513 18284048 CG4345 grim 13840 1.590062112 18283903 2.396292005 18283623 3.13375 18283623 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 1 0 0 1 0 0 0 0 0 3L_18313729_18314789 3L 18313729 18314789 CG4345 grim 44056 2.204968944 18314116 2.786790267 18314116 3.62375 18314116 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 3L_18321381_18322226 3L 18321381 18322226 CG4319 rpr 41436 1.434782609 18321491 2.841251448 18321750 4.73875 18321750 0 0 0 0 0 0 2 2 2 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 3L_18326437_18327262 3L 18326437 18327262 CG4319 rpr 36400 1.127329193 18326820 2.154113557 18326820 3.38125 18326820 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_18368576_18368821 3L 18368576 18368821 CG4319 rpr 4914 1.51863354 18368652 2.690614137 18368652 2.88375 18368652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 3L_18380502_18380753 3L 18380502 18380753 CG4319 rpr 16840 1.192546584 18380590 1.349942063 18380590 1.16375 18380590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_18404523_18405363 3L 18404523 18405363 CG13701 skl TSS overlap 2.008281573 18405053 3.59212051 18405053 6.5475 18405053 1 0 1 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 3L_18553572_18554689 3L 18553572 18554689 CG7271 CG7271 TSS overlap 2.751552795 18554241 4.119351101 18554103 6.62625 18554241 1 0 1 0 0 0 4 2 2 2 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3L_18558213_18559470 3L 18558213 18559470 CG4216 term TSS overlap 2.722567288 18558609 3.682502897 18558609 5.60375 18558609 1 0 1 0 0 0 6 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3L_18584351_18585145 3L 18584351 18585145 CG4166 not transcript overlap 1.281573499 18584987 4.486674392 18584707 5.685 18584707 0 1 1 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_18592906_18593671 3L 18592906 18593671 CG6896 MYPT-75D transcript overlap 1.354037267 18593011 2.180764774 18593501 3.14625 18593501 0 0 0 0 0 0 3 1 1 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 3L_18594739_18594999 3L 18594739 18594999 CG6896 MYPT-75D transcript overlap 0.767080745 18594833 2.243337196 18594833 2.82375 18594833 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_18713691_18713910 3L 18713691 18713910 CG6877 Aut1 57 1.907867495 18713813 1.57589803 18713813 1.86375 18713813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_18832890_18833240 3L 18832890 18833240 CG6856 CG6856 TSS overlap 3.086956522 18832930 2.403244496 18832930 3.6 18832930 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_18941169_18941703 3L 18941169 18941703 CG14075 CG14075 8570 0.905797101 18941253 1.610660487 18941533 2.42 18941533 0 0 0 0 0 0 4 4 3 1 0 0 3 3 1 0 0 0 2 0 0 0 0 0 3L_18997096_18997347 3L 18997096 18997347 CG11614 nkd transcript overlap 1.271221532 18997177 2.111239861 18997177 2.72625 18997177 0 0 0 0 0 0 2 1 1 1 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3L_18998192_18999254 3L 18998192 18999254 CG11614 nkd transcript overlap 3.225672878 18998878 5.701042874 18998878 6.4425 18998878 1 0 1 0 0 0 1 1 1 1 1 0 3 3 2 1 1 1 0 0 0 0 0 0 3L_19007920_19008471 3L 19007920 19008471 CG11614 nkd transcript overlap 1.672877847 19008030 2.41599073 19008030 2.45875 19008030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_19009022_19010353 3L 19009022 19010353 CG11614 nkd transcript overlap 1.65320911 19009888 2.3198146 19009350 3.10625 19009888 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 2 1 1 1 1 1 3L_19023890_19024638 3L 19023890 19024638 CG3797 CG3797 3423 1.685300207 19024280 4.073001159 19024280 5.85375 19024280 0 1 1 0 0 0 4 3 1 1 1 0 4 4 2 2 1 0 2 1 0 0 0 0 3L_19046510_19047044 3L 19046510 19047044 CG14080 Mkp3 transcript overlap 1.98136646 19046874 2.082271147 19046620 3.2175 19046620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_19048142_19048958 3L 19048142 19048958 CG14080 Mkp3 transcript overlap 4.031055901 19048532 7.502896871 19048532 10.86375 19048532 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 3L_19051443_19052162 3L 19051443 19052162 CG14080 Mkp3 TSS overlap 1.814699793 19051639 2.509849363 19051754 3.23375 19051524 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_19119701_19119987 3L 19119701 19119987 CG9739 fz2 transcript overlap 1.710144928 19119821 1.877172654 19119821 2.4125 19119821 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_19122117_19122660 3L 19122117 19122660 CG9739 fz2 transcript overlap 2.133540373 19122221 2.488991889 19122500 2.58625 19122500 0 0 0 0 0 0 1 1 1 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3L_19132539_19133966 3L 19132539 19133966 CG9739 fz2 transcript overlap 1.569358178 19133234 2.91193511 19132964 3.95875 19132964 0 0 0 0 0 0 4 1 1 0 0 0 3 2 2 0 0 0 1 0 0 0 0 0 3L_19136417_19137178 3L 19136417 19137178 CG9739 fz2 532 1.320910973 19137045 2.60834299 19136765 3.02625 19136765 0 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3L_19141930_19142487 3L 19141930 19142487 CG9739 fz2 6045 1.261904762 19142038 1.900347625 19142038 2.93875 19142038 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_19144322_19144871 3L 19144322 19144871 CG9739 fz2 8437 1.35610766 19144701 2.923522596 19144432 3.68625 19144432 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_19149436_19149924 3L 19149436 19149924 CG9739 fz2 13551 1.123188406 19149546 1.960602549 19149774 3.18875 19149546 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_19281453_19281841 3L 19281453 19281841 CG9614 pip transcript overlap 2.505175983 19281542 1.881807648 19281770 2.75875 19281542 0 0 0 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3L_19295783_19296275 3L 19295783 19296275 CG9614 pip transcript overlap 1.214285714 19295892 2.081112399 19295892 3.13125 19295892 0 0 0 0 0 0 3 2 2 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_19519409_19519957 3L 19519409 19519957 CG9300 CG9300 transcript overlap 1.306418219 19519499 1.827346466 19519499 3.02875 19519499 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_19521696_19522811 3L 19521696 19522811 CG9300 CG9300 4015 1.891304348 19522324 6.126303592 19522061 6.96125 19522061 0 1 1 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_19523090_19523367 3L 19523090 19523367 CG9300 CG9300 5409 1.175983437 19523200 2.154113557 19523200 1.36 19523200 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_19525953_19526602 3L 19525953 19526602 CR33063 mir-9a 3797 1.34989648 19526432 4.800695249 19526432 6.3275 19526432 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_19527121_19528202 3L 19527121 19528202 CR33063 mir-9a 2197 3.775362319 19527752 16.202781 19527752 17.60375 19527752 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_19726608_19727167 3L 19726608 19727167 CG8742 Gyc76C transcript overlap 1.199792961 19727002 1.950173812 19726718 2.49125 19726718 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 3L_19741009_19741149 3L 19741009 19741149 CG8548 CG14104 Kap-alpha1 CG14104 TSS overlap 1.68426501 19741049 2.090382387 19741049 2.4075 19741049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_19804650_19805668 3L 19804650 19805668 CG8287 Rab8 TSS overlap 1.757763975 19804864 3.556199305 19805219 5.44 19805219 0 1 1 0 0 0 4 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 3L_19807684_19808031 3L 19807684 19808031 CG8334 CG8334 TSS overlap 1.298136646 19807724 1.841251448 19807864 2.4375 19807864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_19829010_19831007 3L 19829010 19831007 CG8103 CG32217 Mi-2 Su(Tpl) transcript overlap 2.308488613 19830350 2.828505214 19829612 4.21875 19829612 0 0 0 0 0 0 3 3 3 3 3 3 3 2 2 2 1 1 0 0 0 0 0 0 3L_19831493_19833425 3L 19831493 19833425 CG8103 CG32217 Mi-2 Su(Tpl) transcript overlap 3.263975155 19831882 3.772885284 19831882 5.46375 19831882 1 0 1 0 0 0 4 1 1 1 0 0 4 2 2 1 0 0 2 0 0 0 0 0 3L_19840207_19841522 3L 19840207 19841522 CG8103 CG32217 Mi-2 Su(Tpl) transcript overlap 1.32194617 19841368 2.453070684 19840296 3.03 19840296 0 0 0 0 0 0 3 1 1 1 1 1 5 3 3 1 1 1 0 0 0 0 0 0 3L_19847287_19847479 3L 19847287 19847479 CG8025 Mtr3 transcript overlap 1.534161491 19847397 2.206257242 19847397 2.30375 19847397 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_19940323_19940863 3L 19940323 19940863 CG7749 fat2 1813 1.16252588 19940427 2.515643105 19940427 2.87125 19940694 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 3L_20115132_20115700 3L 20115132 20115700 CG32223 CG32223 transcript overlap 1.459627329 20115242 2.097334878 20115242 2.76375 20115242 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_20215074_20215594 3L 20215074 20215594 CG32227 CG32227 transcript overlap 2.00931677 20215464 2.685979143 20215464 3.81 20215464 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_20226612_20227156 3L 20226612 20227156 CG32227 CG32227 transcript overlap 1.661490683 20226986 2.324449594 20226986 3.76 20226986 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 3L_20235805_20236305 3L 20235805 20236305 CG32226 CG6597 CG32226 CG6597 TSS overlap 3.403726708 20236192 1.794901506 20236084 2.63125 20236084 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3L_20247209_20247559 3L 20247209 20247559 CG6625 Snap TSS overlap 2.468944099 20247319 2.019698725 20247319 2.67375 20247459 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_20331761_20332809 3L 20331761 20332809 CG5408 trbl transcript overlap 1.988612836 20331900 1.480880649 20332642 2.5 20332390 0 0 0 0 0 1 "Casal and Leptin, 1996 " 3 1 1 0 0 0 2 2 0 0 0 0 2 1 0 0 0 0 3L_20334025_20334531 3L 20334025 20334531 CG5408 trbl transcript overlap 3.092132505 20334361 3.376593279 20334135 6.255 20334361 1 0 1 0 0 1 "Casal and Leptin, 1996 " 3 3 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_20336151_20337244 3L 20336151 20337244 CG5408 trbl 702 1.675983437 20336807 10.72885284 20336538 17.09 20336538 0 1 1 0 0 1 "Casal and Leptin, 1996 " 0 0 0 0 0 0 4 2 1 0 0 0 0 0 0 0 0 0 3L_20338381_20339810 3L 20338381 20339810 CG5408 trbl 2932 2.204968944 20339404 4.227114716 20339404 6.3075 20339404 1 0 1 0 0 1 "Casal and Leptin, 1996 " 4 2 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 3L_20340291_20340992 3L 20340291 20340992 CG13248 CG13248 3418 1.611801242 20340830 2.281575898 20340581 2.82625 20340581 0 0 0 0 0 0 3 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_20363780_20364257 3L 20363780 20364257 CG5262 CG5262 transcript overlap 1.224637681 20364165 2.453070684 20363886 4.2775 20363886 0 0 0 0 0 0 1 1 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 3L_20382443_20382690 3L 20382443 20382690 CG5910 CG5910 transcript overlap 0.947204969 20382531 1.475086906 20382531 1.785 20382531 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3L_20408395_20409445 3L 20408395 20409445 CG5976 CG5976 transcript overlap 1.612836439 20408715 3.572421784 20408715 4.78 20408715 0 0 0 0 0 0 3 1 1 1 1 1 3 1 1 1 1 1 1 0 0 0 0 0 3L_20450147_20451594 3L 20450147 20451594 CG5059 CG5059 transcript overlap 2.35610766 20451224 5.643105446 20451224 8.55625 20451224 1 0 1 0 0 0 3 1 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 3L_20460063_20460690 3L 20460063 20460690 CG4858 CG4858 TSS overlap 2.329192547 20460383 2.23986095 20460383 3.89875 20460383 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3L_20502861_20503442 3L 20502861 20503442 CG4786 CG4786 28606 3.010351967 20503273 3.076477404 20503273 2.86125 20503273 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_20556943_20557518 3L 20556943 20557518 CG4761 knrl 2566 1.303312629 20557333 2.880648899 20557333 3.77 20557333 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 3L_20562847_20563936 3L 20562847 20563936 CG13251 CG13251 7135 1.680124224 20563766 2.657010429 20563235 3.57625 20563235 0 0 0 0 0 0 1 1 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 3L_20568862_20569120 3L 20568862 20569120 CG13251 CG13251 1951 1.562111801 20568972 1.537659328 20568972 2.25 20568972 0 0 0 0 0 0 1 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3L_20627042_20628873 3L 20627042 20628873 CG4717 kni transcript overlap 2.363354037 20628187 4.31170336 20627907 7.01875 20628187 1 0 1 0 0 0 "Rothe et al., 1994" 4 2 2 0 0 0 1 1 1 0 0 0 4 1 0 0 0 0 3L_20630206_20630773 3L 20630206 20630773 CG4717 kni 1002 0.982401656 20630358 1.746234067 20630641 2.19625 20630641 0 0 0 0 0 0 "Rothe et al., 1994" 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_20631241_20631722 3L 20631241 20631722 CG4717 kni 2037 1.791925466 20631582 1.884125145 20631351 2.64125 20631351 0 0 0 0 0 0 "Rothe et al., 1994" 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_20633387_20634232 3L 20633387 20634232 CG4717 kni 4183 3.931677019 20633777 8.375434531 20633777 15.5325 20633777 1 0 1 0 0 0 "Rothe et al., 1994" 3 3 3 0 0 0 1 1 1 0 0 0 3 2 1 0 0 0 3L_20673874_20674269 3L 20673874 20674269 CG13252 CG13252 transcript overlap 1.557971014 20674182 1.720741599 20674182 2.3925 20673980 0 0 0 0 0 0 2 2 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3L_20718240_20719014 3L 20718240 20719014 CG11399 CG11399 transcript overlap 12.18426501 20718846 1.805330243 20718349 2.7925 20718349 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3L_20722985_20723521 3L 20722985 20723521 CG3871 Six4 transcript overlap 1.604554865 20723104 3.904982619 20723351 3.8775 20723351 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 3L_20724088_20724429 3L 20724088 20724429 CG3871 Six4 transcript overlap 1.33126294 20724190 1.667439166 20724259 2.81 20724259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_20729040_20729311 3L 20729040 20729311 CG3871 Six4 2431 1.254658385 20729150 1.396292005 20729150 2.105 20729150 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3L_20743232_20743774 3L 20743232 20743774 CG3680 CG3680 TSS overlap 2.504140787 20743445 3.548088065 20743445 5.2625 20743324 1 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_20852455_20852980 3L 20852455 20852980 CG10589 CG10589 8687 1.371635611 20852565 2.294322132 20852565 3.45625 20852565 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3L_20915214_20915530 3L 20915214 20915530 CG33283 CG33283 2608 1.625258799 20915306 2.163383546 20915306 2.9275 20915306 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3L_20941422_20941619 3L 20941422 20941619 CG9936 skd transcript overlap 1.892339545 20941450 2.146002317 20941450 1.46 20941450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_20942636_20943181 3L 20942636 20943181 CG9936 skd transcript overlap 2.137681159 20942746 3.32792584 20942746 3.80625 20942746 0 0 0 0 0 0 1 1 1 1 1 1 3 2 2 2 2 2 0 0 0 0 0 0 3L_20944693_20945474 3L 20944693 20945474 CG9936 skd transcript overlap 1.297101449 20944792 2.845886443 20945072 5.3875 20945072 0 1 1 0 0 0 1 1 1 1 1 0 2 1 1 1 1 1 0 0 0 0 0 0 3L_20959305_20959583 3L 20959305 20959583 CG9936 skd transcript overlap 1.851966874 20959415 2.061413673 20959415 1.36625 20959415 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_20961701_20962191 3L 20961701 20962191 CG10585 CG10585 TSS overlap 2.054865424 20961741 2.202780997 20961741 2.73 20961741 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_20980404_20980895 3L 20980404 20980895 CG32434 siz transcript overlap 1.962732919 20980753 3.412514484 20980753 4.0925 20980753 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_21000150_21002134 3L 21000150 21002134 CG32434 siz transcript overlap 2.273291925 21001659 5.298957126 21001379 7.6825 21001379 1 0 1 0 0 0 3 3 2 0 0 0 5 3 3 0 0 0 9 1 1 0 0 0 3L_21060688_21060954 3L 21060688 21060954 CG10573 ko transcript overlap 1.65320911 21060784 2.84820394 21060784 3.63125 21060784 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_21076484_21076710 3L 21076484 21076710 CG10564 Ac78C transcript overlap 1.683229814 21076572 1.76013905 21076572 1.79625 21076572 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21079670_21080452 3L 21079670 21080452 CG10564 Ac78C transcript overlap 1.761904762 21079751 6.805330243 21080031 10.88375 21080031 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21174820_21175037 3L 21174820 21175037 CG18023 Eip78C transcript overlap 1.064182195 21174901 1.171494786 21174901 2.15 21174901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21232370_21232926 3L 21232370 21232926 CG7673 Edg78E 726 1.191650854 21232760 2.613682093 21232760 4.028967254 21232760 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 3L_21279010_21279290 3L 21279010 21279290 CG12972 CG32436 CG12972 CG32436 transcript overlap 2.038899431 21279120 2.570422535 21279120 3.93324937 21279120 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3L_21280351_21281335 3L 21280351 21281335 CG32436 CG32436 transcript overlap 1.462049336 21280942 2.908450704 21280942 3.867758186 21280942 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_21382791_21383624 3L 21382791 21383624 CG5081 Syx7 3128 1.604364326 21383180 3.549295775 21383180 6.462216625 21383180 0 1 1 0 0 0 2 2 2 1 1 0 0 0 0 0 0 0 5 2 1 1 1 1 3L_21401494_21402219 3L 21401494 21402219 CG5069 croc 8178 1.925996205 21402086 2.517102616 21401602 4.945843829 21401807 0 0 0 0 0 0 1 1 1 0 0 0 2 2 2 1 1 0 0 0 0 0 0 0 3L_21410567_21411115 3L 21410567 21411115 CG5069 croc 170 2.032258065 21410667 2.176056338 21410667 3.267002519 21410947 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_21413789_21414814 3L 21413789 21414814 CG5069 croc 3392 4.520872865 21414366 3.867203219 21414366 5.734256927 21414366 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 2 2 1 0 0 3L_21430849_21431769 3L 21430849 21431769 CG7199 Hr78 TSS overlap 1.967741935 21431381 7.958752515 21430973 10.58060453 21430973 0 1 1 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3L_21498654_21498934 3L 21498654 21498934 CG7634 CG7634 333 0.509487666 21498764 2.340040241 21498764 3.680100756 21498764 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21513460_21513946 3L 21513460 21513946 CG14574 CG14574 1247 1.035104364 21513559 1.978873239 21513559 2.55163728 21513559 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_21532168_21532427 3L 21532168 21532427 CG7807 AP-2 272 1.688804554 21532276 2.737424547 21532276 1.827455919 21532276 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_21569196_21569406 3L 21569196 21569406 CG14577 ORMDL TSS overlap 1.090132827 21569236 2.132796781 21569236 3.87279597 21569236 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21661492_21661768 3L 21661492 21661768 CG11247 CG11247 transcript overlap 1.898481973 21661599 3.765593561 21661599 2.837531486 21661599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_21834530_21834783 3L 21834530 21834783 CG7437 mub transcript overlap 0.808349146 21834624 2.213279678 21834624 3.293450882 21834624 0 0 0 0 0 0 2 0 0 0 0 0 3 3 3 0 0 0 0 0 0 0 0 0 3L_22000182_22000993 3L 22000182 22000993 CG14561 CG14561 208 2.101518027 22000572 3.84305835 22000572 7.371536524 22000572 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22066512_22067071 3L 22066512 22067071 CG12673 olf413 2886 0.885199241 22066622 9.898390342 22066622 18.36649874 22066622 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_22069204_22070221 3L 22069204 22070221 CG12673 olf413 TSS overlap 1.54459203 22069809 3.687122736 22069809 7.060453401 22069809 0 1 1 0 0 0 3 1 1 1 1 0 4 1 1 0 0 0 1 0 0 0 0 0 3L_22115561_22115829 3L 22115561 22115829 CG12673 olf413 transcript overlap 1.122390892 22115659 1.746478873 22115659 2.389168766 22115659 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22201054_22201942 3L 22201054 22201942 CG6395 Csp TSS overlap 3.323529412 22201274 3.018108652 22201497 4.818639798 22201497 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3L_22283167_22283458 3L 22283167 22283458 CG5723 Ten-m transcript overlap 1.782732448 22283288 1.741448692 22283288 2.366498741 22283288 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3L_22333862_22335259 3L 22333862 22335259 CG5723 Ten-m transcript overlap 2.15654649 22334532 8.273641851 22333972 10.91435768 22334252 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22336263_22337863 3L 22336263 22337863 CG5723 Ten-m transcript overlap 2.617647059 22336894 22.76156942 22336894 22.97103275 22336894 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 3L_22341289_22341559 3L 22341289 22341559 CG5723 Ten-m transcript overlap 2.30455408 22341389 3.64889336 22341389 5.365239295 22341389 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22365279_22365559 3L 22365279 22365559 CG14460 CG14460 7519 1.066413662 22365389 3.234406439 22365389 2.853904282 22365389 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_22399707_22399987 3L 22399707 22399987 CG11438 CG11438 686 0.871916509 22399817 1.706237425 22399817 3.292191436 22399817 0 0 0 0 0 0 3 2 2 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3L_22520652_22520932 3L 22520652 22520932 CG14459 CG14459 3158 0.988614801 22520762 3.432595573 22520762 4.40302267 22520762 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3L_22521489_22522552 3L 22521489 22522552 CG14459 CG14459 3995 1.466793169 22522159 4.205231388 22522159 6.437027708 22522159 0 1 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3L_22547588_22547863 3L 22547588 22547863 CG6914 CG6914 7378 2.130929791 22547698 3.386317907 22547698 4.824937028 22547698 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3L_22651011_22651425 3L 22651011 22651425 CG6838 CG6838 TSS overlap 6.539848197 22651185 3.287726358 22651185 5.479848866 22651185 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22716809_22717342 3L 22716809 22717342 CG32451 SPoCk transcript overlap 1.330170778 22716892 3.85915493 22716892 5.976070529 22716892 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22717845_22718125 3L 22717845 22718125 CG32451 SPoCk transcript overlap 1.776091082 22717955 2.237424547 22717955 3.677581864 22717955 0 0 0 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3L_22790822_22791382 3L 22790822 22791382 CG32459 CG32459 906 1.157495256 22790932 2.132796781 22790932 3.297229219 22790932 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22844432_22844629 3L 22844432 22844629 CG12768 CG12768 transcript overlap 1.572106262 22844469 2.494969819 22844469 2.875314861 22844469 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22877354_22878024 3L 22877354 22878024 CG11100 Mes2 1031 1.990512334 22877464 4.213279678 22877464 1.804785894 22877464 0 0 0 0 0 1 "Stathopoulos et al., 2002 " 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3L_22881702_22881939 3L 22881702 22881939 CG11100 Mes2 transcript overlap 1.615749526 22881808 2.293762575 22881808 2.039042821 22881808 0 0 0 0 0 1 "Stathopoulos et al., 2002 " 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3L_22909979_22910672 3L 22909979 22910672 CG32457 CG32457 10679 0.787476281 22910128 1.834004024 22910392 3.938287154 22910392 0 0 0 0 0 0 2 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_-165_1322 3R -165 1322 CG12581 CG12581 TSS overlap 1.537950664 614 4.884305835 55 8.518891688 334 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_45263_45539 3R 45263 45539 CG1107 CG31516 auxillin CG31516 transcript overlap 2.04743833 45373 2.938631791 45373 4.200251889 45373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_137048_137901 3R 137048 137901 CG9791 CG9791 TSS overlap 1.685009488 137312 4.249496982 137451 6.468513854 137451 0 1 1 0 0 0 2 1 1 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 3R_165881_166419 3R 165881 166419 CG9772 CG9772 594 1.219165085 166267 2.028169014 166267 3.356423174 165991 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_173772_174862 3R 173772 174862 CG9768 hkb 1400 1.79886148 174162 5.618712274 174162 9.426952141 174162 0 1 1 0 0 0 "Hader et al.,2000" 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3R_278077_278573 3R 278077 278573 CG31522 CG31522 transcript overlap 1.636622391 278407 3.007042254 278407 3.369017632 278407 0 0 0 0 0 0 2 2 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_283990_284518 3R 283990 284518 CG31522 CG31522 4954 1.149905123 284100 2.403420523 284100 3.34256927 284100 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 3R_297985_299030 3R 297985 299030 CG31523 CG31523 transcript overlap 3.319734345 298647 4.675050302 298647 7.042821159 298367 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 3R_423850_424398 3R 423850 424398 CG12587 CG12587 3426 1.34914611 423967 2.259557344 423967 3.876574307 423967 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_429070_429605 3R 429070 429605 CG12587 CG12587 8646 1.875711575 429180 3.480885312 429180 4.474811083 429180 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 3R_434267_434801 3R 434267 434801 CG1056 5-HT2 3796 1.668880455 434353 2.274647887 434353 3.094458438 434353 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_439567_439762 3R 439567 439762 CG1056 5-HT2 transcript overlap 1.5056926 439595 2.841046278 439595 4.413098237 439595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_464010_464568 3R 464010 464568 CG9775 CG9775 transcript overlap 1.466793169 464399 1.968812877 464119 3.458438287 464119 0 0 0 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_465356_466472 3R 465356 466472 CG9775 CG9775 transcript overlap 1.813092979 465466 2.691146881 466023 4.069269521 466023 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 3R_485121_486140 3R 485121 486140 CG31531 CG31531 TSS overlap 2.722960152 485470 6.046277666 485470 10.82367758 485470 1 0 1 0 0 0 1 1 0 0 0 0 5 1 0 0 0 0 1 0 0 0 0 0 3R_488296_489090 3R 488296 489090 CG31531 CG31531 transcript overlap 1.375711575 488686 3.596579477 488686 3.758186398 488406 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 3R_627861_629291 3R 627861 629291 CG14656 CG14656 416 1.740986717 627971 3.46277666 627971 4.850125945 627971 0 0 0 0 0 0 1 1 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 3R_630070_630566 3R 630070 630566 CG31529 CG31529 transcript overlap 1.628083491 630180 2.349094567 630398 1.882871537 630180 0 0 0 0 0 0 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 3R_671775_672589 3R 671775 672589 CG1133 opa 5946 1.190702087 672163 6.352112676 672163 11.09949622 672163 0 1 1 0 0 0 1 1 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 3R_673147_673632 3R 673147 673632 CG1133 opa 4903 1.572106262 673462 3.549295775 673257 5.090680101 673257 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_674741_675542 3R 674741 675542 CG1133 opa 2993 1.350094877 675097 3.692152918 674851 5.793450882 674851 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_677966_679248 3R 677966 679248 CG1133 opa TSS overlap 2.395635674 678616 3.995975855 678616 6.55163728 678616 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_679745_680348 3R 679745 680348 CG1133 opa transcript overlap 2.722960152 679969 4.69416499 679969 6.978589421 679969 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4 3 3 2 0 0 3R_683739_684294 3R 683739 684294 CG1133 opa transcript overlap 2.338709677 683849 3.486921529 683849 7.136020151 683849 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_690452_690737 3R 690452 690737 CG1133 opa transcript overlap 1.84914611 690562 1.298792757 690562 1.768261965 690562 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_691579_692132 3R 691579 692132 CG1133 opa transcript overlap 2.964895636 691689 1.828973843 691689 3.102015113 691689 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_736099_737212 3R 736099 737212 CG31536 Cdep TSS overlap 2.079696395 736209 5.392354125 736841 10.87153652 736841 1 0 1 0 0 0 3 2 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_740212_740489 3R 740212 740489 CG31536 Cdep transcript overlap 1.287476281 740322 1.996981891 740322 2.001259446 740322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_748682_748944 3R 748682 748944 CG31536 Cdep transcript overlap 1.29316888 748792 1.824949698 748792 3.518891688 748792 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_773660_773823 3R 773660 773823 CR32862 snRNA:U1:82Eb transcript overlap 2.60626186 773713 1.969818913 773713 4.552896725 773713 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_785494_786023 3R 785494 786023 CG2016 CG2016 transcript overlap 1.221062619 785883 2.957746479 785604 4.424433249 785604 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_815525_816333 3R 815525 816333 CG2022 CG2022 1051 1.227703985 815896 5.857142857 816167 9.505037783 815896 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_820031_820852 3R 820031 820852 CG2022 CG2022 5557 4.051233397 820419 2.83501006 820419 4.294710327 820419 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_847349_847629 3R 847349 847629 CG2022 CG2022 32875 1.661290323 847459 3.242454728 847459 4.478589421 847459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_851407_851955 3R 851407 851955 CG2022 CG2022 36933 1.523719165 851506 2.720321932 851506 2.807304786 851506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_864269_865309 3R 864269 865309 CG2530 corto 47099 2.038899431 864860 7.899396378 865139 12.2418136 865139 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_881617_882175 3R 881617 882175 CG2530 corto 30233 1.366223909 882005 2.567404427 882005 2.780856423 882005 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_935176_936234 3R 935176 936234 CG12007 CG12007 17576 2.072106262 935797 6.565392354 935520 10.75314861 935520 1 0 1 0 0 0 3 1 1 1 0 0 3 3 2 2 0 0 2 0 0 0 0 0 3R_938895_940278 3R 938895 940278 CG12007 CG12007 13532 2.388994307 939269 3.95472837 939269 4.452141058 939269 0 0 0 0 0 0 1 0 0 0 0 0 4 2 1 1 0 0 3 0 0 0 0 0 3R_987022_987566 3R 987022 987566 CG12591 dpr16 transcript overlap 1.130929791 987132 6.559356137 987132 9.617128463 987132 0 1 1 0 0 0 4 3 0 0 0 0 3 2 2 0 0 0 1 0 0 0 0 0 3R_1037404_1038512 3R 1037404 1038512 CG2534 cno transcript overlap 3.028462998 1037794 6.498993964 1037794 11.08312343 1037794 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3 2 1 0 0 0 3R_1042936_1043289 3R 1042936 1043289 CG2534 cno TSS overlap 1.981973435 1043119 1.65694165 1042961 3.255667506 1043119 0 0 0 0 0 0 2 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3R_1193909_1194049 3R 1193909 1194049 CG16708 CG16708 TSS overlap 3.137571157 1193949 1.819919517 1193949 2.520151134 1193949 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_1342581_1343409 3R 1342581 1343409 CG2902 Nmdar1 transcript overlap 2.934535104 1342959 4.856136821 1342959 8.088161209 1342959 1 0 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_1473878_1474515 3R 1473878 1474515 CG2244 MTA1-like TSS overlap 1.418406072 1474420 2.072434608 1474290 2.425692695 1474010 0 0 0 0 0 0 1 1 1 1 1 1 2 2 2 0 0 0 0 0 0 0 0 0 3R_1484650_1485254 3R 1484650 1485254 CG2182 CG2182 transcript overlap 1.806451613 1484821 2.636820926 1485099 6.013853904 1484821 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_1495970_1496772 3R 1495970 1496772 CG1347 CG1347 transcript overlap 1.673624288 1496060 5.745472837 1496340 10.38161209 1496340 0 1 1 0 0 0 2 1 1 1 1 0 3 2 0 0 0 0 0 0 0 0 0 0 3R_1497350_1498441 3R 1497350 1498441 CG1347 CG1347 transcript overlap 9.554079696 1498272 3.218309859 1497994 3.444584383 1497994 0 0 0 0 0 0 3 1 1 0 0 0 6 5 4 1 1 0 1 0 0 0 0 0 3R_1509072_1509345 3R 1509072 1509345 CG2108 Rab23 transcript overlap 1.037001898 1509175 3.107645875 1509175 4.220403023 1509175 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 0 0 3R_1510161_1511458 3R 1510161 1511458 CG2108 Rab23 TSS overlap 1.853889943 1511291 5.598591549 1510262 9.841309824 1510262 0 1 1 0 0 0 5 2 2 2 1 1 4 3 3 1 1 1 1 0 0 0 0 0 3R_1546437_1546980 3R 1546437 1546980 CG2102 cas 3415 1.067362429 1546810 2.654929577 1546534 2.928211587 1546810 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_1553443_1554357 3R 1553443 1554357 CG1239 CG1239 4906 2.564516129 1553832 6.804828974 1553832 10.56171285 1553832 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 6 1 1 0 0 0 3R_1562273_1562890 3R 1562273 1562890 CG1236 CG1236 TSS overlap 2.932637571 1562441 5.019114688 1562441 8.963476071 1562441 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_1784225_1784789 3R 1784225 1784789 CG11373 CG11373 1918 1.143263757 1784637 2.810865191 1784637 3.983627204 1784637 0 0 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3R_1833171_1833466 3R 1833171 1833466 CG10279 Rm62 transcript overlap 3.300759013 1833384 2.57444668 1833384 2.068010076 1833384 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_1835795_1836073 3R 1835795 1836073 CG10279 Rm62 1494 1.043643264 1835904 1.632796781 1835904 4.170025189 1835904 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2034262_2034796 3R 2034262 2034796 CG1148 Osi2 1925 1.591081594 2034652 3.075452716 2034372 4.473551637 2034372 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3R_2041121_2041605 3R 2041121 2041605 CG1150 Osi3 TSS overlap 1.445920304 2041230 2.922535211 2041230 4.672544081 2041230 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 3R_2104209_2104420 3R 2104209 2104420 CG1154 Osi12 TSS overlap 1.980075901 2104249 2.564386318 2104249 5.173803526 2104249 0 1 1 0 0 0 2 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_2177374_2177635 3R 2177374 2177635 CG10295 Pak transcript overlap 1.277039848 2177484 2.794768612 2177484 3.044080605 2177484 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_2251147_2251661 3R 2251147 2251661 CG10272 gpp transcript overlap 1.058823529 2251257 1.742454728 2251492 2.979848866 2251492 0 0 0 0 0 0 2 2 2 2 0 0 2 2 1 1 0 0 0 0 0 0 0 0 3R_2253616_2254160 3R 2253616 2254160 CG10272 gpp transcript overlap 2.288425047 2253726 4.47082495 2253726 6.071788413 2253726 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_2488518_2489140 3R 2488518 2489140 CG1264 lab transcript overlap 1.358633776 2488909 2.100603622 2488628 3.620906801 2488628 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_2561389_2562207 3R 2561389 2562207 CG31481 pb transcript overlap 1.279886148 2561771 2.601609658 2561491 3.795969773 2561771 0 0 0 0 0 0 3 1 1 1 1 0 4 4 4 3 2 0 0 0 0 0 0 0 3R_2565178_2566035 3R 2565178 2566035 CG31481 pb transcript overlap 1.496204934 2565567 3.834004024 2565567 7.852644836 2565567 0 1 1 0 0 0 3 2 2 2 2 2 2 1 1 1 1 1 2 1 0 0 0 0 3R_2567605_2568185 3R 2567605 2568185 CG31481 pb TSS overlap 1.876660342 2567995 2.189134809 2567855 1.22418136 2567715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2576084_2576623 3R 2576084 2576623 CG1046 zen 3298 1.209677419 2576193 2.38028169 2576193 4.366498741 2576193 0 0 0 0 0 1 "Doyle et al., 1989; Jiang et al., 1991" 2 1 1 1 1 1 3 3 2 1 1 1 2 0 0 0 0 0 3R_2577181_2578190 3R 2577181 2578190 CG1046 zen 1731 1.741935484 2577291 5.391348089 2577291 5.647355164 2577291 0 1 1 0 0 1 "Doyle et al., 1989; Jiang et al., 1991" 2 2 2 0 0 0 2 2 2 2 1 0 2 1 1 0 0 0 3R_2579787_2581714 3R 2579787 2581714 CG1046 zen TSS overlap 2.658444023 2581323 5.487927565 2581323 10.0465995 2580251 1 0 1 1 0 1 "Doyle et al., 1989; Jiang et al., 1991" 4 2 2 2 2 2 2 2 2 2 2 1 4 3 2 2 2 1 3R_2586618_2589105 3R 2586618 2589105 CG2198 Ama TSS overlap 1.887096774 2587998 4.812877264 2587254 7.710327456 2588278 0 1 1 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 2 1 1 1 1 1 3R_2630470_2630750 3R 2630470 2630750 CR33565 mir-10S 4506 1.443074004 2630580 1.698189135 2630580 3.044080605 2630580 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2671230_2672064 3R 2671230 2672064 CG1030 Scr transcript overlap 1.450664137 2671334 3.175050302 2671334 4.585642317 2671334 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3R_2684669_2685172 3R 2684669 2685172 CG2047 ftz 4874 1.188804554 2684746 2.235412475 2685008 3.931989924 2685008 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2689422_2690469 3R 2689422 2690469 CG2047 ftz TSS overlap 2.481973435 2690300 3.567404427 2689811 5.64861461 2689811 1 0 1 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3R_2691263_2692029 3R 2691263 2692029 CG2047 ftz 1217 2.39943074 2691863 5.912474849 2691607 9.153652393 2691607 1 0 1 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3R_2710901_2711435 3R 2710901 2711435 CG2047 ftz 20855 1.196394687 2711284 3.257545272 2711284 4.337531486 2711284 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2714300_2714825 3R 2714300 2714825 CG2047 ftz 24254 1.712523719 2714655 3.347082495 2714655 6.5 2714655 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2718739_2719479 3R 2718739 2719479 CG2047 ftz 28693 1.780834915 2719041 4.663983903 2719041 6.071788413 2719041 0 1 1 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_2729326_2729610 3R 2729326 2729610 CG1028 Antp transcript overlap 1.258064516 2729425 2.291750503 2729425 0.682619647 2729425 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_2733059_2733615 3R 2733059 2733615 CG1028 Antp transcript overlap 1.407020873 2733445 2.779678068 2733445 4.809823678 2733445 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_2738409_2738908 3R 2738409 2738908 CG1028 Antp transcript overlap 2.579696395 2738520 3.682092555 2738741 2.187657431 2738741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_2739808_2740062 3R 2739808 2740062 CG1028 Antp transcript overlap 0.978178368 2739892 2.204225352 2739892 2.282115869 2739892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2742247_2743075 3R 2742247 2743075 CG1028 Antp transcript overlap 2.221062619 2742632 5.220321932 2742632 9.889168766 2742632 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3R_2774633_2775201 3R 2774633 2775201 CG1028 Antp transcript overlap 1.172675522 2774743 3.412474849 2775022 5.379093199 2775022 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_2804069_2804582 3R 2804069 2804582 CG1028 Antp transcript overlap 1.235294118 2804179 2.509054326 2804179 1.498740554 2804179 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_2819923_2821134 3R 2819923 2821134 CG1028 Antp transcript overlap 3.123339658 2820885 7.047283702 2820604 14.01511335 2820604 1 0 1 0 0 0 2 1 1 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_2826341_2826934 3R 2826341 2826934 CG1028 Antp 1391 2.433586338 2826794 3.50804829 2826794 3.060453401 2826794 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_2832380_2833209 3R 2832380 2833209 CG1028 Antp 7430 1.992409867 2832760 3.42555332 2832760 6.700251889 2832760 0 1 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 3R_2859096_2859649 3R 2859096 2859649 CG1982 Sodh-1 18408 0.875711575 2859481 2.555331992 2859481 3.138539043 2859481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2861502_2861782 3R 2861502 2861782 CG1982 Sodh-1 16275 0.700189753 2861612 2.284708249 2861612 3.453400504 2861612 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2863205_2863727 3R 2863205 2863727 CG1982 Sodh-1 14330 1.545540797 2863315 3.181086519 2863315 4 2863315 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 3R_2869400_2870172 3R 2869400 2870172 CG1982 Sodh-1 7885 1.037950664 2870002 3.294768612 2870002 4.919395466 2870002 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_2914449_2915534 3R 2914449 2915534 CG1913 alphaTub84B 2189 2.869070209 2915086 2.707243461 2915366 3.152392947 2914819 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_2928538_2929005 3R 2928538 2929005 CG1070 Alh transcript overlap 1.227703985 2928648 2.985915493 2928648 3.007556675 2928648 0 0 0 0 0 0 1 1 1 1 1 1 2 2 2 2 2 1 0 0 0 0 0 0 3R_2931113_2932162 3R 2931113 2932162 CG1070 Alh transcript overlap 1.344402277 2931473 5.609657948 2931752 10.45214106 2931752 0 1 1 0 0 0 2 2 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3R_2934761_2935055 3R 2934761 2935055 CG1070 Alh transcript overlap 0.941176471 2934891 1.697183099 2934891 1.411838791 2934891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2935336_2936125 3R 2935336 2936125 CG1070 Alh transcript overlap 1.297912713 2935955 2.730382294 2935717 3.522670025 2935717 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_2936965_2937990 3R 2936965 2937990 CG1070 Alh transcript overlap 1.632827324 2937570 5.004024145 2937570 7.25440806 2937570 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_2948287_2948561 3R 2948287 2948561 CG1070 Alh transcript overlap 1.113851992 2948391 1.407444668 2948391 1.442065491 2948391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_2949670_2949945 3R 2949670 2949945 CG1070 Alh TSS overlap 1.735294118 2949847 3.124748491 2949710 3.824937028 2949710 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_2987942_2988755 3R 2987942 2988755 CG2507 sas TSS overlap 1.740037951 2988476 4.826961771 2988476 6.76070529 2988476 0 1 1 0 0 0 3 2 2 2 1 0 2 2 2 2 1 0 0 0 0 0 0 0 3R_3451756_3452282 3R 3451756 3452282 CG14597 CG14597 22293 1.743833017 3452119 2.804828974 3452119 4.272040302 3452119 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_3550441_3550723 3R 3550441 3550723 CG2616 CG2616 2302 1.75711575 3550551 1.901408451 3550551 3.20906801 3550551 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_3581193_3581450 3R 3581193 3581450 CG10919 CG10919 2443 1.404174573 3581280 2.799798793 3581280 4.602015113 3581280 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_3737026_3737627 3R 3737026 3737627 CG2867 Prat TSS overlap 1.416508539 3737416 3.055331992 3737136 5.818639798 3737136 0 1 1 0 0 0 3 3 3 1 1 0 3 2 1 1 1 1 0 0 0 0 0 0 3R_3762424_3762643 3R 3762424 3762643 CG11094 dsx transcript overlap 1.519924099 3762505 1.788732394 3762505 1.361460957 3762505 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_3939141_3939926 3R 3939141 3939926 CG7850 puc transcript overlap 1.74288425 3939493 4.173038229 3939493 5.863979849 3939493 0 1 1 0 0 0 2 1 1 1 0 0 2 1 1 1 1 0 1 1 1 1 1 0 3R_3942101_3942380 3R 3942101 3942380 CG7850 puc transcript overlap 1.590132827 3942211 2.489939638 3942211 5.042821159 3942211 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_3976922_3977199 3R 3976922 3977199 CG9656 grn transcript overlap 2.347248577 3977029 3.783702213 3977029 5.98488665 3977029 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4006062_4006341 3R 4006062 4006341 CG9656 grn transcript overlap 1.057874763 4006171 2.107645875 4006171 3.505037783 4006171 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_4007263_4007706 3R 4007263 4007706 CG9656 grn 99 3.074952562 4007303 3.822937626 4007303 4.59697733 4007303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4016730_4017499 3R 4016730 4017499 CG9656 grn 9566 2.223908918 4016803 2.408450704 4017076 3.953400504 4017076 0 0 0 0 0 0 2 2 2 2 0 0 3 3 3 2 0 0 0 0 0 0 0 0 3R_4018801_4019331 3R 4018801 4019331 CG33779 CG33779 11213 1.294117647 4019161 2.247484909 4019161 4.137279597 4019161 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_4030906_4032188 3R 4030906 4032188 CG33779 CG33779 362 1.10626186 4032018 3.740442656 4031558 4.636020151 4031759 0 0 0 0 0 0 2 1 1 1 1 0 1 1 1 1 1 0 2 0 0 0 0 0 3R_4100751_4101308 3R 4100751 4101308 CG7508 ato 2206 1.133776091 4101141 2.548289738 4100861 3.943324937 4100861 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_4102290_4103667 3R 4102290 4103667 CG7508 ato TSS overlap 1.587286528 4103371 2.76861167 4102391 4.44836272 4103371 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_4109991_4110247 3R 4109991 4110247 CG11671 CG11671 3414 1.423149905 4110094 2.261569416 4110094 4.020151134 4110094 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 3R_4111518_4112051 3R 4111518 4112051 CG11671 CG11671 1610 1.381404175 4111883 4.649899396 4111883 2.41813602 4111883 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_4114368_4115170 3R 4114368 4115170 CG11671 CG11671 707 1.320683112 4114478 2.567404427 4115000 1.906801008 4115000 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 3R_4129191_4129676 3R 4129191 4129676 CG9620 Gfr transcript overlap 1.302656546 4129581 1.998993964 4129581 3.358942065 4129301 0 0 0 0 0 0 2 2 1 1 0 0 2 1 1 0 0 0 1 1 1 0 0 0 3R_4162208_4162757 3R 4162208 4162757 CG9603 CG9603 4006 2.15085389 4162587 4.309859155 4162587 5.056675063 4162587 1 0 1 0 0 0 2 2 2 1 1 0 2 2 2 0 0 0 1 0 0 0 0 0 3R_4183018_4183226 3R 4183018 4183226 CG7954 stck transcript overlap 10.0341556 4183057 2.254527163 4183057 3.086901763 4183057 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_4190487_4191030 3R 4190487 4191030 CG7963 CG7963 1885 0.986717268 4190586 2.753521127 4190862 4.117128463 4190586 0 0 0 0 0 0 2 2 2 0 0 0 3 3 1 0 0 0 0 0 0 0 0 0 3R_4293544_4293817 3R 4293544 4293817 CG31369 CG31369 23997 1.84629981 4293647 2.497987928 4293647 4.34256927 4293647 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4340847_4341089 3R 4340847 4341089 CG17911 Or85c 2103 1.883301708 4340919 3.479879276 4340919 3.732997481 4340919 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_4410703_4410983 3R 4410703 4410983 CG7994 CG7994 6227 1.131878558 4410813 1.986921529 4410813 3.617128463 4410813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_4520244_4520584 3R 4520244 4520584 CG9786 hb transcript overlap 2.162239089 4520414 2.56639839 4520414 4.08186398 4520414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4524571_4525394 3R 4524571 4525394 CG9786 hb 1031 1.124288425 4524681 2.105633803 4524950 5.217884131 4524950 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4526517_4527310 3R 4526517 4527310 CG8112 CG8112 TSS overlap 1.629981025 4526739 3.393360161 4526879 6.356423174 4526879 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_4574262_4574456 3R 4574262 4574456 CG8223 CG8223 transcript overlap 1.427893738 4574290 2.237424547 4574290 2.523929471 4574290 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_4618096_4618716 3R 4618096 4618716 CG33720 CG33719 Pif1B Pif1A TSS overlap 1.166034156 4618266 2.815895372 4618266 4.244332494 4618266 0 0 0 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4633622_4634930 3R 4633622 4634930 CG9837 CG9837 603 3.183111954 4634008 5.674044266 4634008 7.811083123 4634458 1 0 1 0 0 0 3 1 1 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 3R_4645411_4645680 3R 4645411 4645680 CG9821 CG9821 transcript overlap 1.711574953 4645515 1.967806841 4645515 3.036523929 4645515 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_4665944_4667003 3R 4665944 4667003 CG31349 pyd transcript overlap 1.848197343 4666054 2.095573441 4666334 3.379093199 4666334 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_4667547_4668085 3R 4667547 4668085 CG31349 pyd transcript overlap 3.269449715 4667665 7.23943662 4667665 11.80982368 4667665 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_4675469_4676017 3R 4675469 4676017 CG31349 pyd transcript overlap 3.672675522 4675852 3.585513078 4675852 4.869017632 4675852 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 3R_4682860_4684183 3R 4682860 4684183 CG31349 pyd transcript overlap 2.111005693 4683746 3.45472837 4683746 5.585642317 4683746 1 0 1 0 0 0 3 2 2 2 2 2 3 1 0 0 0 0 0 0 0 0 0 0 3R_4757435_4757696 3R 4757435 4757696 CG31349 pyd 457 5.44971537 4757515 1.518108652 4757515 2.4697733 4757515 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4801472_4802274 3R 4801472 4802274 CG11967 CG11967 4369 1.90512334 4802104 3.400402414 4802104 5.981108312 4802104 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_4845495_4845965 3R 4845495 4845965 CG11987 tgo TSS overlap 6.320683112 4845605 2.383299799 4845605 3.974811083 4845605 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_4847408_4849288 3R 4847408 4849288 CG11988 neur transcript overlap 3.892789374 4848281 3.393360161 4847770 6.273299748 4847770 1 0 1 0 0 0 4 3 2 0 0 0 4 4 4 4 2 2 0 0 0 0 0 0 3R_4849848_4851522 3R 4849848 4851522 CG11988 neur transcript overlap 3.60341556 4849958 4.988933602 4850797 8.070528967 4850797 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_4854176_4854709 3R 4854176 4854709 CG11988 neur transcript overlap 2.158444023 4854539 1.557344064 4854539 3.19395466 4854539 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_4855544_4856298 3R 4855544 4856298 CG11988 neur transcript overlap 2.989563567 4855912 2.552313883 4855912 5.24559194 4855912 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_4858824_4859668 3R 4858824 4859668 CG11988 neur transcript overlap 8.982922201 4859490 2.713279678 4858933 4.85138539 4858933 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_4863101_4864713 3R 4863101 4864713 CG11988 neur transcript overlap 3.960151803 4863728 10.9305835 4863728 15.49874055 4863728 1 0 1 0 0 0 6 3 2 1 1 0 5 4 3 2 2 0 0 0 0 0 0 0 3R_4983690_4983963 3R 4983690 4983963 CG9755 pum transcript overlap 1.797912713 4983793 1.942655936 4983793 4.861460957 4983793 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 3R_5056261_5056807 3R 5056261 5056807 CG9755 pum transcript overlap 1.131878558 5056358 3.133802817 5056638 3.384130982 5056358 0 0 0 0 0 0 5 2 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 3R_5084149_5084348 3R 5084149 5084348 CG9740 CG9740 TSS overlap 1.295066414 5084188 6.331991952 5084188 7.838790932 5084188 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5164468_5164985 3R 5164468 5164985 CG33936 CG33936 2607 0.891840607 5164851 2.608651911 5164851 4.083123426 5164851 0 0 0 0 0 0 2 1 1 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 3R_5170087_5170656 3R 5170087 5170656 CG33936 CG33936 transcript overlap 2.028462998 5170477 2.639839034 5170477 2.48488665 5170477 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_5180544_5180822 3R 5180544 5180822 CG33936 CG33936 transcript overlap 1.256166983 5180653 2.024144869 5180653 3.216624685 5180653 0 0 0 0 0 0 2 2 2 2 2 0 3 3 3 3 3 1 0 0 0 0 0 0 3R_5182994_5183274 3R 5182994 5183274 CG33937 CG33936 CG33937 CG33936 transcript overlap 2.14800759 5183104 2.041247485 5183104 3.571788413 5183104 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_5226886_5227453 3R 5226886 5227453 CG9354 CG8132 RpL34b CG8132 TSS overlap 1.753320683 5227016 3.3138833 5227149 6.167506297 5227149 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_5253932_5254286 3R 5253932 5254286 CG16765 l(3)10615 transcript overlap 1.261859583 5254042 2.845070423 5254042 3.890428212 5254042 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5323786_5324066 3R 5323786 5324066 CG9366 RhoL transcript overlap 1.690702087 5323896 2.737424547 5323896 3.434508816 5323896 0 0 0 0 0 1 "Casal and Leptin, 1996; Stathopoulos et al., 2002 " 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_5328885_5329680 3R 5328885 5329680 CG9366 RhoL 586 1.112903226 5329230 5.112676056 5329230 5.934508816 5329230 0 1 1 0 0 1 "Casal and Leptin, 1996; Stathopoulos et al., 2002 " 3 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_5340864_5341395 3R 5340864 5341395 CG9378 Rlc1 transcript overlap 1.142314991 5340953 2.173038229 5340953 4.069269521 5340953 0 0 0 0 0 0 5 5 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_5399532_5399676 3R 5399532 5399676 CG9399 CG9399 transcript overlap 3.060721063 5399575 2.368209256 5399575 2.716624685 5399575 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_5416677_5417844 3R 5416677 5417844 CG9424 CG8312 bocksbeutel CG8312 TSS overlap 1.951612903 5416714 14.37122736 5417135 22.58186398 5417135 0 1 1 0 0 0 3 2 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_5420989_5421542 3R 5420989 5421542 CG8312 CG8312 transcript overlap 3.299810247 5421372 3.754527163 5421372 5.799748111 5421372 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_5430268_5430544 3R 5430268 5430544 CG8312 CG8312 transcript overlap 1.89373814 5430384 2.129778672 5430384 3.420654912 5430384 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5453706_5454247 3R 5453706 5454247 CG8319 CG8319 transcript overlap 2.631878558 5453805 1.490945674 5453805 2.690176322 5453805 0 0 0 0 0 0 2 1 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 3R_5500030_5501423 3R 5500030 5501423 CG8358 CG8358 TSS overlap 1.116698292 5500680 25.69014085 5500680 36.83753149 5500680 0 1 1 0 0 0 8 1 1 1 0 0 8 0 0 0 0 0 1 0 0 0 0 0 3R_5595914_5596193 3R 5595914 5596193 CG9471 CG9471 1071 0.834914611 5596023 1.952716298 5596023 3.119647355 5596023 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_5657371_5657911 3R 5657371 5657911 CG12806 CG12806 transcript overlap 1.336812144 5657721 1.910462777 5657481 3.408060453 5657481 0 0 0 0 0 0 2 2 2 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_5699426_5700721 3R 5699426 5700721 CG12418 CG12418 142 3.631878558 5700069 8.911468813 5700069 13.74685139 5700069 1 0 1 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_5705308_5706141 3R 5705308 5706141 CG12802 CG12802 3911 1.828273245 5705698 4.989939638 5705698 7.070528967 5705698 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_5707261_5707899 3R 5707261 5707899 CG12802 CG12802 5864 1.488614801 5707371 3.204225352 5707371 3.726700252 5707371 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_5712236_5712706 3R 5712236 5712706 CG12802 CG12802 10839 1.527514231 5712536 6.150905433 5712336 10.07808564 5712336 0 1 1 0 0 0 1 1 1 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 3R_5905181_5905680 3R 5905181 5905680 CG5361 CG5361 4093 1.062618596 5905275 2.988933602 5905275 3.850125945 5905275 0 0 0 0 0 0 2 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5928890_5929293 3R 5928890 5929293 CG6203 Fmr1 transcript overlap 1.421252372 5928917 3.621730382 5928917 5.909319899 5928917 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_5969673_5970410 3R 5969673 5970410 CG6241 CG6241 TSS overlap 2.296963947 5970170 5.516096579 5969962 8.273299748 5969962 1 0 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_5980645_5981203 3R 5980645 5981203 CG3953 l(3)IX-14 transcript overlap 1.375711575 5980753 1.93360161 5980753 3.0302267 5980753 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_5990697_5991230 3R 5990697 5991230 CG6264 Best1 transcript overlap 1.35199241 5990807 2.814889336 5990807 5.395465995 5990807 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_6048226_6048774 3R 6048226 6048774 CG12420 CG12420 TSS overlap 1.657495256 6048324 3.122736419 6048324 5.0302267 6048324 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_6177419_6178996 3R 6177419 6178996 CG4029 jumu transcript overlap 2.167931689 6177809 3.204225352 6177529 3.450881612 6177809 0 0 0 0 0 0 1 0 0 0 0 0 7 1 1 0 0 0 0 0 0 0 0 0 3R_6196424_6197445 3R 6196424 6197445 CG6312 Rfx transcript overlap 1.269449715 6197275 2.577464789 6196534 4.705289673 6196763 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_6200350_6200904 3R 6200350 6200904 CG6312 Rfx transcript overlap 1.127134725 6200723 2.749496982 6200723 3.867758186 6200723 0 0 0 0 0 0 2 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_6379711_6379980 3R 6379711 6379980 CG17117 hth transcript overlap 1.163187856 6379810 2.330985915 6379810 3.400503778 6379810 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 3R_6419986_6420532 3R 6419986 6420532 CG17117 hth transcript overlap 2.130929791 6420362 2.237424547 6420096 3.695214106 6420096 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_6425355_6426322 3R 6425355 6426322 CG17117 hth transcript overlap 3.196394687 6425890 4.14084507 6425890 6.943324937 6425890 1 0 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 3R_6427960_6428471 3R 6427960 6428471 CG17117 hth transcript overlap 1.880455408 6428070 3.358148893 6428070 3.85768262 6428301 0 0 0 0 0 0 1 1 1 1 1 1 3 3 3 3 3 3 0 0 0 0 0 0 3R_6429420_6430103 3R 6429420 6430103 CG17117 hth transcript overlap 1.870018975 6429947 1.614688129 6429676 2.710327456 6429947 0 0 0 0 0 0 2 2 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3R_6439800_6440941 3R 6439800 6440941 CG17117 hth transcript overlap 2.443074004 6440207 5.488933602 6440207 12.25692695 6440207 1 0 1 0 0 0 0 0 0 0 0 0 3 2 2 2 2 1 0 0 0 0 0 0 3R_6442333_6443741 3R 6442333 6443741 CG17117 hth transcript overlap 1.944971537 6442439 4.65694165 6442936 5.617128463 6442936 0 1 1 0 0 0 0 0 0 0 0 0 3 2 1 1 1 1 0 0 0 0 0 0 3R_6444298_6444856 3R 6444298 6444856 CG17117 hth transcript overlap 1.407969639 6444406 3.489939638 6444406 4.136020151 6444406 0 0 0 0 0 0 1 1 1 1 1 0 2 2 2 2 2 1 1 1 0 0 0 0 3R_6449495_6450053 3R 6449495 6450053 CG17117 hth transcript overlap 1.129032258 6449884 1.80583501 6449605 3.355163728 6449605 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_6451897_6452930 3R 6451897 6452930 CG17117 hth transcript overlap 1.55028463 6451993 3.492957746 6452507 2.833753149 6451993 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_6484139_6485212 3R 6484139 6485212 CG6465 CG6465 17680 1.323529412 6484798 5.052313883 6484249 6.647355164 6484249 0 1 1 0 0 0 4 3 1 1 1 1 7 5 5 4 3 2 1 0 0 0 0 0 3R_6507318_6507587 3R 6507318 6507587 CG14688 CG14688 2419 1.575901328 6507428 2.488933602 6507428 3.183879093 6507428 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_6688248_6688858 3R 6688248 6688858 CG6574 CG6574 TSS overlap 1.479127135 6688695 3.42555332 6688695 4.523929471 6688695 0 0 0 0 0 0 2 1 1 0 0 0 3 2 2 0 0 0 0 0 0 0 0 0 3R_6722113_6722572 3R 6722113 6722572 CG6621 CG6621 2861 1.151802657 6722404 4.269617706 6722404 7.118387909 6722404 0 1 1 0 0 0 5 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_7047752_7047879 3R 7047752 7047879 CG4863 RpL3 transcript overlap 2.79316888 7047787 1.505030181 7047787 2.443324937 7047787 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_7053905_7054461 3R 7053905 7054461 CG17726 CG17726 1419 1.258064516 7054295 2.062374245 7054015 3.350125945 7054015 0 0 0 0 0 0 4 4 4 4 2 0 1 1 1 1 0 0 1 0 0 0 0 0 3R_7060551_7061432 3R 7060551 7061432 CG17184 CG17721 CG17184 CG17721 TSS overlap 3.996204934 7060731 5.427565392 7060871 9.550377834 7060871 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_7064676_7065203 3R 7064676 7065203 CG31388 CG31388 transcript overlap 1.374762808 7065033 2.655935614 7064753 2.748110831 7065033 0 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 3R_7128846_7129339 3R 7128846 7129339 CG31386 CG31386 transcript overlap 1.546489564 7129186 2.071428571 7128920 1.944584383 7128920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_7146990_7147782 3R 7146990 7147782 CG31386 CG31386 15660 1.213472486 7147369 3.015090543 7147631 4.457178841 7147369 0 0 0 0 0 0 2 0 0 0 0 0 3 1 1 0 0 0 2 0 0 0 0 0 3R_7177333_7178851 3R 7177333 7178851 CG6715 KP78a 966 2.969639469 7177632 2.902414487 7177632 3.425692695 7177632 0 0 0 0 0 0 4 4 4 1 1 0 4 3 3 1 1 0 1 0 0 0 0 0 3R_7204035_7204856 3R 7204035 7204856 CG17228 pros transcript overlap 2.880455408 7204425 8.188128773 7204425 12.43198992 7204425 1 0 1 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_7215099_7215924 3R 7215099 7215924 CG17228 pros transcript overlap 1.720113852 7215490 3.944668008 7215490 8.229219144 7215490 0 1 1 0 0 0 1 1 0 0 0 0 5 4 3 2 1 0 0 0 0 0 0 0 3R_7256995_7257831 3R 7256995 7257831 CG5276 CG6764 CG5276 CG6764 TSS overlap 16.38614801 7257385 6.82193159 7257385 17.08312343 7257385 1 0 1 0 0 0 1 0 0 0 0 0 4 2 2 2 0 0 1 0 0 0 0 0 3R_7465300_7465856 3R 7465300 7465856 CG17309 Csk transcript overlap 0.836812144 7465686 2.120724346 7465686 3.623425693 7465686 0 0 0 0 0 0 3 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_7472791_7473277 3R 7472791 7473277 CG17309 Csk transcript overlap 1.183111954 7472831 2.071428571 7472831 2.521410579 7472831 0 0 0 0 0 0 2 2 1 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3R_7475645_7475914 3R 7475645 7475914 CG17309 Csk transcript overlap 1.659392789 7475753 2.828973843 7475753 4.619647355 7475753 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_7518363_7518607 3R 7518363 7518607 CG18765 CG18765 842 1.30455408 7518445 2.802816901 7518445 3.449622166 7518445 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2 1 0 0 0 0 3R_7600996_7602638 3R 7600996 7602638 CG31364 l(3)neo38 2188 2.971537002 7602170 5.642857143 7601087 9.269521411 7601087 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_7603946_7606551 3R 7603946 7606551 CG31364 l(3)neo38 TSS overlap 1.866223909 7604056 2.971830986 7605640 3.346347607 7605640 0 0 0 0 0 0 2 0 0 0 0 0 5 1 0 0 0 0 2 0 0 0 0 0 3R_7612072_7612798 3R 7612072 7612798 CG17360 CG17360 TSS overlap 1.936432638 7612402 2.893360161 7612402 4.343828715 7612402 0 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_7638388_7638914 3R 7638388 7638914 CG31116 CG31116 6105 1.314041746 7638485 3.197183099 7638485 5.444584383 7638485 0 1 1 0 0 0 3 3 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_7702729_7703467 3R 7702729 7703467 CG14728 sad TSS overlap 1.5 7702952 6.122736419 7702952 10.16624685 7702952 0 1 1 0 0 0 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_7819421_7819680 3R 7819421 7819680 CG3359 mfas 384 1.590132827 7819511 3.055331992 7819511 4.192695214 7819511 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_7824016_7824210 3R 7824016 7824210 CG14734 Tk transcript overlap 1.609108159 7824040 2.707243461 7824040 2.701511335 7824040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_7949314_7949863 3R 7949314 7949863 CG4702 CG4702 transcript overlap 1.878557875 7949695 3.135814889 7949415 5.153652393 7949415 0 1 1 0 0 0 3 3 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 3R_7954225_7954773 3R 7954225 7954773 CG4702 CG4702 306 5.811195446 7954323 3.055331992 7954323 4.979848866 7954323 0 0 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8077290_8078916 3R 8077290 8078916 CG3942 CG3942 993 1.499051233 8077674 5.791750503 8078466 9.304785894 8078466 0 1 1 0 0 0 3 2 2 0 0 0 3 2 2 0 0 0 2 0 0 0 0 0 3R_8086663_8086943 3R 8086663 8086943 CG11502 svp transcript overlap 1.078747628 8086773 2.285714286 8086773 3.268261965 8086773 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_8208036_8208821 3R 8208036 8208821 CG10035 CG10035 TSS overlap 1.552182163 8208116 3.226358149 8208658 6.05163728 8208518 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8256336_8257203 3R 8256336 8257203 CG5266 Pros25 TSS overlap 4.122390892 8256673 7.802816901 8256673 13.15365239 8256673 1 0 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 3R_8270003_8270263 3R 8270003 8270263 CG5887 desat1 transcript overlap 1.507590133 8270093 3.245472837 8270093 2.982367758 8270093 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_8293500_8293640 3R 8293500 8293640 CG31449 Hsp70Ba 0 1.491461101 8293528 2.077464789 8293528 0.77581864 8293528 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8467255_8467528 3R 8467255 8467528 CG6753 CG6753 transcript overlap 0.882352941 8467365 3.031187123 8467365 5.010075567 8467365 0 1 1 0 0 0 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8473684_8474006 3R 8473684 8474006 CG6234 CG6234 TSS overlap 1.643263757 8473750 1.965794769 8473838 2.756926952 8473750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8474816_8475569 3R 8474816 8475569 CG6234 CG6234 transcript overlap 1.981973435 8475400 4.411468813 8474915 4.409319899 8474915 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 3R_8538077_8538603 3R 8538077 8538603 CG6019 mus308 148 6.478178368 8538176 2.516096579 8538456 1.750629723 8538456 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8580256_8580816 3R 8580256 8580816 CG14390 beat-Vc TSS overlap 2.517077799 8580646 3.012072435 8580646 5.079345088 8580646 1 0 1 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3R_8614773_8615028 3R 8614773 8615028 CG31345 CG31345 27723 1.255218216 8614858 2.707243461 8614858 2.25440806 8614858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8752794_8753069 3R 8752794 8753069 CG31298 beat-Vb transcript overlap 1.975659229 8752904 2.780590717 8752904 3.12125 8752904 0 0 0 0 0 0 2 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 3R_8757597_8757834 3R 8757597 8757834 CG31298 beat-Vb transcript overlap 0.89959432 8757668 1.879746835 8757668 1.9975 8757668 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_8797911_8798380 3R 8797911 8798380 CG7381 CG7381 transcript overlap 1.157200811 8797951 2.017932489 8798091 2.3775 8798091 0 0 0 0 0 0 2 2 2 2 2 0 1 1 1 1 1 0 1 0 0 0 0 0 3R_8811650_8812280 3R 8811650 8812280 CG31342 CG31342 TSS overlap 3.360040568 8811830 5.564345992 8811830 7.42875 8811830 1 0 1 0 0 0 3 2 1 1 1 1 2 1 0 0 0 0 1 0 0 0 0 0 3R_8836705_8837013 3R 8836705 8837013 CG8031 CG8031 TSS overlap 1.761663286 8836927 3.068565401 8836814 4.5325 8836814 0 0 0 0 0 0 1 1 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_8858093_8858884 3R 8858093 8858884 CG7642 ry TSS overlap 1.65010142 8858482 1.564345992 8858715 2.14125 8858482 0 0 0 0 0 1 "Doyle et al., 1989" 1 1 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_8861814_8862097 3R 8861814 8862097 CG7642 ry transcript overlap 2.707910751 8861924 2.534810127 8861924 3.05875 8861924 0 0 0 0 0 1 "Doyle et al., 1989" 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_8892820_8893688 3R 8892820 8893688 CG7771 sim transcript overlap 1.709939148 8893509 3.918776371 8893509 3.3575 8893229 0 0 0 0 0 1 "Kasai et al., 1992, Kasai et al., 1998; Markstein et al., 2004" 4 1 1 1 1 0 4 1 0 0 0 0 1 0 0 0 0 0 3R_8895104_8898505 3R 8895104 8898505 CG7771 sim transcript overlap 5.260649087 8896153 17.13607595 8895879 18.3575 8895879 1 0 1 1 0 1 "Kasai et al., 1992, Kasai et al., 1998; Markstein et al., 2004" 4 2 2 2 2 1 5 5 5 4 3 2 6 2 1 1 0 0 3R_9118697_9120519 3R 9118697 9120519 CG8458 wntD TSS overlap 5.836713996 9119078 24.19620253 9119078 35.4475 9119078 1 0 1 0 1 1 "Gordon et al., 2005" 1 0 0 0 0 0 3 3 3 2 2 2 3 2 2 1 0 0 3R_9124460_9124600 3R 9124460 9124600 CG8774 CG8774 TSS overlap 0.809330629 9124500 1.444092827 9124500 1.83125 9124500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_9124740_9124880 3R 9124740 9124880 CG8774 CG8774 transcript overlap 0.922920892 9124780 1.021097046 9124780 1.17875 9124780 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_9230447_9231250 3R 9230447 9231250 CG17045 yellow-e3 TSS overlap 1.685598377 9230557 2.034810127 9230557 3.04125 9230557 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_9251526_9251666 3R 9251526 9251666 CG18290 Act87E 41 1.464503043 9251566 2.018987342 9251566 1.2325 9251566 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_9265992_9266516 3R 9265992 9266516 CG9764 yrt 5288 2.335699797 9266102 2.778481013 9266102 4.16 9266102 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 0 0 1 0 0 0 0 0 3R_9310771_9311025 3R 9310771 9311025 CG17025 CG17025 18943 1.037525355 9310876 2.095991561 9310876 2.875 9310876 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_9332160_9332422 3R 9332160 9332422 CG12538 CG12538 16835 1.15010142 9332270 1.425105485 9332270 3.23 9332270 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_9454095_9454931 3R 9454095 9454931 CG10841 CG10841 2733 1.572008114 9454204 3.900843882 9454481 5.99125 9454481 0 1 1 0 0 0 2 2 2 1 0 0 3 3 3 2 0 0 0 0 0 0 0 0 3R_9456603_9457088 3R 9456603 9457088 CG10841 CG10841 576 1.554766734 9456638 2.004219409 9456918 3.17125 9456918 0 0 0 0 0 0 3 2 2 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_9471259_9471818 3R 9471259 9471818 CG16901 sqd transcript overlap 2.284989858 9471648 2.251054852 9471648 2.51125 9471368 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_9540497_9541943 3R 9540497 9541943 CG34044 CG34044 571 4.10040568 9540887 7.21835443 9541722 9.75375 9541722 1 0 1 0 0 0 3 3 3 3 1 1 0 0 0 0 0 0 4 4 2 1 0 0 3R_9544795_9545367 3R 9544795 9545367 CG9602 CG9602 907 1.882352941 9544902 6.943037975 9544902 5.91625 9544902 0 1 1 0 0 0 2 2 2 2 2 0 2 2 2 2 2 0 0 0 0 0 0 0 3R_9614089_9614823 3R 9614089 9614823 CG14363 CG14363 transcript overlap 1.452332657 9614447 3.36814346 9614447 4.2075 9614447 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 2 1 0 0 0 0 3R_9628503_9629055 3R 9628503 9629055 CR31331 CR31331 4511 3.056795132 9628885 2.761603376 9628885 3.12875 9628885 0 0 0 0 0 0 3 3 1 1 1 0 4 3 2 2 1 1 2 0 0 0 0 0 3R_9637322_9637859 3R 9637322 9637859 CR33327 pncr001:3R 982 1.096348884 9637712 2.573839662 9637432 2.55375 9637432 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 3R_9638396_9638942 3R 9638396 9638942 CR33327 pncr001:3R TSS overlap 1.237322515 9638492 2.682489451 9638492 3.59625 9638492 0 0 0 0 0 0 2 2 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 3R_9705141_9705664 3R 9705141 9705664 CG9930 E5 5240 1.652129817 9705228 3.879746835 9705228 5.15 9705228 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 3R_9719372_9719652 3R 9719372 9719652 CG2988 ems 7929 1.417849899 9719482 1.859704641 9719482 2.01625 9719482 0 0 0 0 0 0 3 3 3 2 0 0 2 2 2 1 1 1 1 0 0 0 0 0 3R_9725409_9725851 3R 9725409 9725851 CG2988 ems 1730 1.246450304 9725720 4.377637131 9725720 6.3625 9725720 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_9735145_9735985 3R 9735145 9735985 CG2988 ems 7564 1.497971602 9735535 3.401898734 9735535 5.33875 9735535 0 1 1 0 0 0 0 0 0 0 0 0 2 2 2 2 2 2 0 0 0 0 0 0 3R_9761943_9762494 3R 9761943 9762494 CG9929 Art9 6630 1.722109533 9762325 2.697257384 9762325 2.6675 9762325 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_9795589_9798248 3R 9795589 9798248 CG9924 CG9924 transcript overlap 1.753549696 9797849 4.191983122 9797849 4.18625 9797849 0 0 0 0 0 0 5 2 2 2 0 0 3 2 1 0 0 0 5 2 1 1 0 0 3R_9809383_9809915 3R 9809383 9809915 CG9924 CG9924 transcript overlap 2.935091278 9809466 2.635021097 9809466 3.3725 9809466 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_9810475_9811017 3R 9810475 9811017 CG9924 CG9924 transcript overlap 1.557809331 9810585 1.970464135 9810880 2.39875 9810880 0 0 0 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_9814450_9814985 3R 9814450 9814985 CG9924 CG9924 transcript overlap 1.526369168 9814559 4.435654008 9814824 7.6275 9814824 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_9933142_9933492 3R 9933142 9933492 CG12402 CG12402 transcript overlap 1.319472617 9933392 1.958860759 9933392 2.55125 9933392 0 0 0 0 0 0 3 2 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_10104606_10105122 3R 10104606 10105122 CG8651 trx transcript overlap 4.287018256 10104864 3.570675105 10104864 3.67375 10104864 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 2 1 0 0 0 3R_10287624_10288383 3R 10287624 10288383 CG31330 CG31330 28722 2.148073022 10288248 4.301687764 10287968 9.0475 10287968 1 0 1 0 0 0 5 4 2 2 0 0 2 2 1 1 1 0 0 0 0 0 0 0 3R_10292935_10293184 3R 10292935 10293184 CG31330 CG31330 34033 1.626774848 10293041 2.667721519 10293041 2.64 10293041 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_10303295_10304417 3R 10303295 10304417 CG8464 CG8464 32997 1.453346856 10303685 2.567510549 10303685 2.92 10303685 0 0 0 0 0 0 1 1 1 1 1 0 3 2 2 1 1 0 0 0 0 0 0 0 3R_10309968_10310796 3R 10309968 10310796 CG8464 CG8464 26618 1.26673428 10310077 3.378691983 10310346 4.915 10310346 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 3R_10394849_10395500 3R 10394849 10395500 CG8050 Cys TSS overlap 2.271805274 10394959 3.387130802 10395353 4.09 10395353 0 0 0 0 0 0 2 2 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_10396069_10396881 3R 10396069 10396881 CG8050 Cys 706 1.535496957 10396711 6.137130802 10396711 11.12125 10396711 0 1 1 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_10412302_10413370 3R 10412302 10413370 CG31317 stumps 4815 1.773833671 10413204 6.006329114 10412924 7.11375 10412924 0 1 1 0 0 1 "Casal and Leptin, 1996, unpublished" 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 3R_10415243_10415969 3R 10415243 10415969 CG31317 stumps 2216 2.472616633 10415596 4.861814346 10415596 3.4175 10415596 0 0 0 0 0 1 "Casal and Leptin, 1996, unpublished" 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_10416494_10417042 3R 10416494 10417042 CG31317 stumps 1143 1.879310345 10416596 2.792194093 10416596 2.8 10416596 0 0 0 0 0 1 "Casal and Leptin, 1996, unpublished" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_10420819_10421635 3R 10420819 10421635 CG31317 stumps transcript overlap 2.401622718 10420929 1.541139241 10420929 3.9025 10421202 0 0 0 0 0 1 "Casal and Leptin, 1996, unpublished" 3 3 3 3 2 0 3 3 3 3 1 0 0 0 0 0 0 0 3R_10429041_10430080 3R 10429041 10430080 CG31317 stumps transcript overlap 2.50811359 10429151 1.743670886 10429702 2.42875 10429151 0 0 0 0 0 1 "Casal and Leptin, 1996, unpublished" 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_10467737_10467994 3R 10467737 10467994 CG7886 CG7886 transcript overlap 3.086206897 10467847 2.619198312 10467847 2.35875 10467847 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_10473159_10473437 3R 10473159 10473437 CG7832 CG7832 transcript overlap 1.377281947 10473269 2.706751055 10473269 4.125 10473269 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_10477887_10478717 3R 10477887 10478717 CG7832 CG7832 transcript overlap 1.988843813 10478276 3.817510549 10478276 4.0575 10478276 0 0 0 0 0 0 1 1 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 3R_10500612_10500869 3R 10500612 10500869 CG7649 Neu3 transcript overlap 1.623732252 10500718 1.77742616 10500718 1.5425 10500718 0 0 0 0 0 1 "Stathopoulos et al., 2002 " 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_10504881_10506240 3R 10504881 10506240 CG7649 Neu3 transcript overlap 4.520283976 10505551 13.907173 10505551 16.14125 10505551 1 0 1 0 0 1 "Stathopoulos et al., 2002 " 2 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_10522271_10522717 3R 10522271 10522717 CG7649 Neu3 transcript overlap 2.039553753 10522632 2.061181435 10522632 2.25375 10522632 0 0 0 0 0 1 "Stathopoulos et al., 2002 " 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_10539965_10540215 3R 10539965 10540215 CG33967 CG33967 transcript overlap 1.719066937 10540046 1.67721519 10540046 2.69 10540046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_10542824_10543650 3R 10542824 10543650 CG33967 CG33967 transcript overlap 1.726166329 10543214 4.14978903 10543214 3.745 10543214 0 0 0 0 0 0 1 1 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 3R_10544832_10545570 3R 10544832 10545570 CG33967 CG33967 transcript overlap 1.364097363 10545200 1.799578059 10545200 2.73625 10545200 0 0 0 0 0 0 1 1 1 1 1 0 2 2 2 2 1 0 0 0 0 0 0 0 3R_10547531_10547811 3R 10547531 10547811 CG33967 CG33967 transcript overlap 1.545638945 10547641 2.521097046 10547641 2.26375 10547641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_10643285_10644393 3R 10643285 10644393 CG33555 btsz transcript overlap 2.975659229 10643931 14.67405063 10643931 16.42625 10643931 1 0 1 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_10679446_10680058 3R 10679446 10680058 CG33555 btsz TSS overlap 1.868154158 10679626 3.969409283 10679626 6.19125 10679626 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_10729620_10729887 3R 10729620 10729887 CG7007 VhaPPA1-1 TSS overlap 15.22819473 10729701 2.957805907 10729701 4.24125 10729701 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3R_10864817_10865387 3R 10864817 10865387 CG3843 RpL10Aa 1729 2.378296146 10865219 2.260548523 10864927 3.635 10865219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 3R_10972321_10972866 3R 10972321 10972866 CG6904 CG6904 transcript overlap 1.72515213 10972696 2.503164557 10972696 2.2875 10972696 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_11035295_11035792 3R 11035295 11035792 CG4203 CG4203 transcript overlap 1.781947262 11035622 2.510548523 11035622 3.47875 11035622 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_11048641_11048828 3R 11048641 11048828 CG31155 Rpb7 TSS overlap 1.388438134 11048751 1.920886076 11048751 1.84875 11048751 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11055151_11055906 3R 11055151 11055906 CG6563 CG4247 Art3 mRpS10 TSS overlap 1.3336714 11055330 2.209915612 11055330 4.75375 11055480 0 0 0 0 0 0 3 1 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_11059388_11059653 3R 11059388 11059653 CG6535 tefu transcript overlap 1.145030426 11059484 2.180379747 11059484 3.1225 11059484 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11088478_11089036 3R 11088478 11089036 CG6476 Su(var)3-9 transcript overlap 3.400608519 11088728 3.541139241 11088728 3.365 11088728 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 3R_11093275_11093784 3R 11093275 11093784 CG14864 CG14864 transcript overlap 1.630831643 11093640 2.76371308 11093640 4.1675 11093640 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 3R_11094388_11095158 3R 11094388 11095158 CG4334 CG4334 TSS overlap 1.615618661 11094428 1.831223629 11094708 3.585 11094708 0 0 0 0 0 0 1 1 1 1 1 0 2 2 2 2 2 0 0 0 0 0 0 0 3R_11106412_11106900 3R 11106412 11106900 CG4898 Tm1 354 0.707910751 11106517 1.829113924 11106517 2.9625 11106517 0 0 0 0 0 0 1 1 1 1 1 0 2 1 1 1 1 0 0 0 0 0 0 0 3R_11115923_11116804 3R 11115923 11116804 CG4898 Tm1 transcript overlap 2.557809331 11116701 2.455696203 11116313 2.98125 11116313 0 0 0 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_11183002_11183142 3R 11183002 11183142 CG5044 CG5044 transcript overlap 1.441176471 11183042 2.25 11183042 3.02 11183042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11228473_11229001 3R 11228473 11229001 CG6125 CG6125 3788 1.254563895 11228565 1.551687764 11228845 2.7925 11228845 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_11388605_11388874 3R 11388605 11388874 CG18516 CG18516 10111 1.514198783 11388715 1.835443038 11388715 2.7025 11388715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11409969_11410557 3R 11409969 11410557 CG18516 CG18516 31475 1.697768763 11410387 4.070675105 11410387 2.55375 11410387 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_11465489_11466251 3R 11465489 11466251 CG5302 CG5302 6884 1.014198783 11465599 4.175105485 11465867 5.0125 11465867 0 1 1 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_11472543_11473275 3R 11472543 11473275 CG5302 CG5302 13938 1.068965517 11472828 2.697257384 11472828 3.785 11473108 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_11474631_11475720 3R 11474631 11475720 CG5302 CG5302 16026 1.970588235 11475011 3.520042194 11475554 3.80125 11474734 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 2 0 0 5 3 1 0 0 0 3R_11479375_11480964 3R 11479375 11480964 CG33207 pxb 10944 1.893509128 11479745 2.684599156 11479745 4.95125 11479745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11496975_11497255 3R 11496975 11497255 CG33207 pxb transcript overlap 1.050709939 11497085 1.318565401 11497085 1.135 11497085 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_11503929_11504191 3R 11503929 11504191 CG33207 pxb transcript overlap 1.12474645 11504017 1.716244726 11504017 2.3775 11504017 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 2 0 0 0 0 0 0 0 0 3R_11619795_11620308 3R 11619795 11620308 CG4699 CG4699 transcript overlap 1.990872211 11620138 2.682489451 11620138 1.7625 11620138 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3R_11627776_11628082 3R 11627776 11628082 CG9593 CG9593 TSS overlap 2.617647059 11627912 2.428270042 11627912 1.50625 11627801 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_11650176_11650736 3R 11650176 11650736 CG31293 rec transcript overlap 2.072008114 11650286 1.853375527 11650566 2.81375 11650566 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_11682884_11683367 3R 11682884 11683367 CG4225 CG4225 TSS overlap 1.892494929 11683197 2.171940928 11683095 2.6 11683095 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_11746585_11747990 3R 11746585 11747990 CG4221 CG4221 TSS overlap 2.946247465 11747552 2.238396624 11747552 3.18375 11746625 0 0 0 0 0 0 2 1 0 0 0 0 3 3 1 1 1 0 2 0 0 0 0 0 3R_11812031_11812569 3R 11812031 11812569 CG3992 srp transcript overlap 1.111561866 11812141 1.92721519 11812415 2.49375 11812415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11813893_11815212 3R 11813893 11815212 CG3992 srp transcript overlap 2.287018256 11814259 2.20464135 11814259 3.38375 11814259 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 4 0 0 0 0 0 3R_11854020_11855407 3R 11854020 11855407 CG3978 pnr transcript overlap 1.27484787 11854688 7.05907173 11854688 10.315 11854688 0 1 1 0 1 1 "Winick et al., 1993" 1 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_11859695_11860268 3R 11859695 11860268 CG3978 pnr transcript overlap 1.61663286 11860072 3.308016878 11860072 7.37375 11860072 0 1 1 0 0 1 "Winick et al., 1993" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_11875205_11875473 3R 11875205 11875473 CG5013 CG5013 TSS overlap 1.629817444 11875245 1.444092827 11875377 2.6625 11875245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_11925174_11925723 3R 11925174 11925723 CG4006 Akt1 transcript overlap 2.322515213 11925283 2.503164557 11925283 3.19875 11925582 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_12002194_12002474 3R 12002194 12002474 CG8925 CG8925 transcript overlap 0.626774848 12002304 2.050632911 12002304 3.06625 12002304 0 0 0 0 0 0 2 0 0 0 0 0 3 3 1 0 0 0 0 0 0 0 0 0 3R_12069133_12069725 3R 12069133 12069725 CG6889 tara transcript overlap 1.185598377 12069555 2.658227848 12069555 3.53375 12069555 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_12076449_12077512 3R 12076449 12077512 CG6889 tara transcript overlap 1.379310345 12077071 2.54535865 12077071 4.12875 12077071 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12081092_12081561 3R 12081092 12081561 CG6889 tara transcript overlap 2.296146045 12081206 3.011603376 12081206 1.66625 12081206 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_12100141_12100882 3R 12100141 12100882 CG6963 gish transcript overlap 1.618661258 12100712 3.814345992 12100506 7.49875 12100506 0 1 1 0 0 0 1 1 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 3R_12105736_12106563 3R 12105736 12106563 CG6963 gish transcript overlap 1.986815416 12106463 2.362869198 12106117 4.36875 12106117 0 0 0 0 0 0 1 1 1 1 1 1 2 2 2 2 1 0 1 0 0 0 0 0 3R_12162647_12163417 3R 12162647 12163417 CG6987 SF2 4289 1.269776876 12163033 3.748945148 12162753 4.52125 12162753 0 0 0 0 0 0 2 1 1 1 0 0 2 1 1 1 0 0 1 1 0 0 0 0 3R_12174661_12175141 3R 12174661 12175141 CG14879 CG7013 CG14879 ARP-like TSS overlap 1.65010142 12175041 2.071729958 12175041 3.00375 12174906 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_12267293_12267396 3R 12267293 12267396 CG12753 CG12753 TSS overlap 2.314401623 12267315 1.148734177 12267315 2.2 12267315 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_12294305_12294557 3R 12294305 12294557 CG14897 CG14897 transcript overlap 1.54969574 12294412 3.058016878 12294412 1.98625 12294412 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_12352143_12352409 3R 12352143 12352409 CG11769 CG11769 12971 1.779918864 12352253 2.152953586 12352253 2.73875 12352253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12354090_12354646 3R 12354090 12354646 CG31448 CG31448 14694 1.269776876 12354200 2.928270042 12354477 3.95625 12354200 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12369191_12369718 3R 12369191 12369718 CG31448 CG31448 TSS overlap 1.939148073 12369410 3.158227848 12369410 3.9775 12369410 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 3R_12377405_12378366 3R 12377405 12378366 CG14888 CG14888 1646 1.944219067 12377683 5.110759494 12377683 7.32125 12377683 0 1 1 0 0 0 4 4 4 3 2 1 0 0 0 0 0 0 1 0 0 0 0 0 3R_12395969_12396778 3R 12395969 12396778 CG14891 CG14891 460 2.080121704 12396610 2.669831224 12396330 3.99625 12396330 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_12450878_12451252 3R 12450878 12451252 CG6588 Fas1 TSS overlap 2.034482759 12450918 1.599156118 12451058 2.6575 12451058 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12456296_12457091 3R 12456296 12457091 CG6588 Fas1 transcript overlap 1.304259635 12456924 3.892405063 12456680 5.41875 12456680 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12510685_12511237 3R 12510685 12511237 CG10388 Ubx transcript overlap 1.560851927 12511066 2.331223629 12511066 2.84375 12510795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_12526337_12527137 3R 12526337 12527137 CG10388 Ubx transcript overlap 1.871196755 12526967 3.398734177 12526967 3.61125 12526967 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 3R_12528516_12528767 3R 12528516 12528767 CG10388 Ubx transcript overlap 2.196754564 12528626 2.512658228 12528626 3.4925 12528626 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12541233_12541648 3R 12541233 12541648 CG10388 Ubx transcript overlap 3.532454361 12541343 4.540084388 12541343 4.83875 12541343 0 0 0 0 0 0 2 1 1 1 0 0 2 1 1 1 0 0 1 0 0 0 0 0 3R_12545317_12546139 3R 12545317 12546139 CG10388 Ubx transcript overlap 1.359026369 12545427 4.561181435 12545966 7.48 12545966 0 1 1 0 0 0 3 2 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_12555109_12555641 3R 12555109 12555641 CG10388 Ubx transcript overlap 1.215010142 12555217 2.897679325 12555493 4.29625 12555493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12581607_12582001 3R 12581607 12582001 CR31273 bxd transcript overlap 1.846855984 12581933 2.847046414 12581933 2.5525 12581717 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_12589652_12590212 3R 12589652 12590212 CR31273 bxd transcript overlap 2.49188641 12589762 1.987341772 12590042 2.5525 12589762 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12591655_12591931 3R 12591655 12591931 CR31273 bxd transcript overlap 1.079107505 12591761 1.352320675 12591761 2.5475 12591761 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12598586_12599426 3R 12598586 12599426 CR31273 bxd TSS overlap 1.558823529 12599256 6.489451477 12599256 8.325 12599256 0 1 1 0 0 0 1 1 1 1 0 0 2 2 2 1 1 0 1 0 0 0 0 0 3R_12618604_12619154 3R 12618604 12619154 CG3853 Glut3 4571 1.192697769 12618714 2.036919831 12618994 3.05125 12618994 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 3R_12635977_12637900 3R 12635977 12637900 CG10325 abd-A transcript overlap 1.645030426 12637730 4.130801688 12636358 4.87125 12636358 0 0 0 0 0 0 2 2 2 2 1 0 3 1 1 1 1 0 2 0 0 0 0 0 3R_12647549_12648328 3R 12647549 12648328 CG10325 abd-A transcript overlap 1.914807302 12647939 2.904008439 12647939 2.6975 12647939 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_12651654_12652410 3R 12651654 12652410 CG10325 abd-A transcript overlap 1.297160243 12652259 2.97257384 12652044 6.905 12652044 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 3R_12665155_12666228 3R 12665155 12666228 CG10325 abd-A 9386 1.672413793 12665545 2.457805907 12666086 3.51375 12665545 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12667628_12667908 3R 12667628 12667908 CR31271 iab-4 7818 0.957403651 12667738 2.861814346 12667738 2.88375 12667738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12690429_12690957 3R 12690429 12690957 CR33623 mir-iab-4-3p 8392 0.832657201 12690787 2.666666667 12690787 3.19875 12690787 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3R_12703928_12704767 3R 12703928 12704767 CG10349 CG10349 683 1.54969574 12704590 2.020042194 12704590 2.48375 12704310 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_12717786_12718335 3R 12717786 12718335 CG10349 CG10349 12336 1.031440162 12718176 1.410337553 12717896 2.6925 12717896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_12724547_12725072 3R 12724547 12725072 CG10349 CG10349 19097 1.321501014 12724892 2.511603376 12724892 4.03625 12724892 0 0 0 0 0 0 1 1 1 1 1 1 2 2 2 2 2 2 0 0 0 0 0 0 3R_12747077_12747611 3R 12747077 12747611 CG31270 CG31270 1896 0.90872211 12747455 1.366033755 12747187 2.4075 12747455 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_12767367_12768149 3R 12767367 12768149 CG11648 Abd-B transcript overlap 1.622718053 12767491 2.764767932 12767707 3.79625 12767707 0 0 0 0 0 0 3 2 2 2 2 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_12786070_12786253 3R 12786070 12786253 CG11648 Abd-B transcript overlap 1.739350913 12786153 2.614978903 12786153 1.42 12786153 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_12898330_12898470 3R 12898330 12898470 CG3983 CG3983 transcript overlap 1.772819473 12898370 1.734177215 12898370 2.24125 12898370 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_12904927_12905489 3R 12904927 12905489 CG3962 Keap1 transcript overlap 1.693711968 12905316 3.627637131 12905316 2.9075 12905316 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_12907399_12908501 3R 12907399 12908501 CG5175 kuk transcript overlap 2.133874239 12908356 3.588607595 12908076 4.75625 12907796 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_13211691_13212151 3R 13211691 13212151 CG31256 CG5319 Brf CG5319 transcript overlap 1.965517241 13211729 2.095991561 13211729 2.21 13211984 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_13219990_13220715 3R 13219990 13220715 CG5413 CREG TSS overlap 1.656186613 13220170 4.539029536 13220300 5.57125 13220170 0 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_13275167_13275303 3R 13275167 13275303 CG5400 Eh TSS overlap 2.535496957 13275205 1.555907173 13275205 1.95 13275205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_13356068_13356275 3R 13356068 13356275 CG5823 CG5823 4022 2.303245436 13356095 2.969409283 13356095 3.32 13356095 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_13430240_13431277 3R 13430240 13431277 CG7623 sll 547 14.74543611 13430875 4.273206751 13430595 5.21375 13430595 1 0 1 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 3R_13651437_13652519 3R 13651437 13652519 CG31246 CG31246 transcript overlap 1.588235294 13652107 4.729957806 13652107 7.8325 13652107 0 1 1 0 0 0 3 2 2 2 2 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_13766740_13767272 3R 13766740 13767272 CG31243 cpo transcript overlap 1.010141988 13766843 2.017932489 13767112 3.5725 13767112 0 0 0 0 0 0 3 2 1 1 1 0 1 1 0 0 0 0 2 0 0 0 0 0 3R_13782984_13783543 3R 13782984 13783543 CG31243 cpo transcript overlap 1.205882353 13783094 2.040084388 13783094 3.53 13783094 0 0 0 0 0 0 3 3 3 3 0 0 3 3 3 2 0 0 0 0 0 0 0 0 3R_13874578_13875050 3R 13874578 13875050 CG7223 htl transcript overlap 1.565922921 13874682 1.864978903 13874956 2.25875 13874956 0 0 0 0 0 1 "Shishido et al., 1993" 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_13875558_13876595 3R 13875558 13876595 CG7223 htl transcript overlap 1.81643002 13875590 4.493670886 13876145 2.8575 13876145 0 0 0 1 0 1 "Shishido et al., 1993" 2 2 2 2 1 0 4 4 3 3 3 2 1 0 0 0 0 0 3R_13906490_13908163 3R 13906490 13908163 CG14317 CG14317 TSS overlap 2.789046653 13907158 7.232067511 13907158 7.94 13907158 1 0 1 0 0 0 4 3 2 1 0 0 4 4 3 1 1 0 0 0 0 0 0 0 3R_13994263_13994807 3R 13994263 13994807 CG7913 PP2A-B' transcript overlap 1.42494929 13994357 1.887130802 13994637 2.43375 13994357 0 0 0 0 0 0 2 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 3R_14023725_14024270 3R 14023725 14024270 CG7187 Ssdp transcript overlap 1.112576065 14023832 2.044303797 14023832 3.055 14023832 0 0 0 0 0 0 3 2 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3R_14118346_14118608 3R 14118346 14118608 CG7129 l(3)05822 transcript overlap 1.31643002 14118438 1.98628692 14118438 1.8375 14118438 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 3R_14224181_14224699 3R 14224181 14224699 CG31232 CG18617 CG31232 Vha100-2 transcript overlap 0.976673428 14224530 1.558016878 14224258 2.87125 14224530 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_14225258_14225538 3R 14225258 14225538 CG31232 CG31232 transcript overlap 1.431034483 14225368 2.660337553 14225368 3.45 14225368 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_14228412_14229261 3R 14228412 14229261 CG31232 CG31232 transcript overlap 1.489858012 14229010 2.406118143 14229010 2.82 14229010 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 3R_14230725_14231075 3R 14230725 14231075 CG7685 CG7685 TSS overlap 1.865111562 14230905 1.833333333 14230905 2.14625 14230905 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_14352775_14353027 3R 14352775 14353027 CG14307 fru transcript overlap 1.676470588 14352881 2.753164557 14352881 3.21125 14352881 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_14402612_14402849 3R 14402612 14402849 CG7693 CG7694 fray CG7694 transcript overlap 0.995943205 14402701 1.715189873 14402701 1.92 14402701 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_14449881_14450521 3R 14449881 14450521 CR31228 CR31228 3739 1.034482759 14450225 2.046413502 14450225 2.9 14450225 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_14489025_14489235 3R 14489025 14489235 CG7698 CG7698 transcript overlap 1.560851927 14489135 3.157172996 14489135 7.64875 14489135 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_14739584_14739858 3R 14739584 14739858 CG17836 CG17836 832 4.270791075 14739694 2.699367089 14739694 2.43875 14739694 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_14748795_14749869 3R 14748795 14749869 CG17836 CG17836 transcript overlap 1.670385396 14749637 2.936708861 14749637 3.5825 14748961 0 0 0 0 0 0 3 1 1 1 0 0 3 3 1 0 0 0 2 0 0 0 0 0 3R_14811335_14812461 3R 14811335 14812461 CG31043 gukh transcript overlap 2.19979716 14812281 4.002109705 14812281 3.8375 14812281 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 3R_14812884_14814118 3R 14812884 14814118 CG31043 gukh transcript overlap 3.807302231 14813390 15.00949367 14813668 18.1025 14813668 1 0 1 0 0 0 4 4 0 0 0 0 4 3 0 0 0 0 1 0 0 0 0 0 3R_14815637_14817461 3R 14815637 14817461 CG31043 gukh transcript overlap 5.045638945 14815966 11.10759494 14815966 18.6675 14815966 1 0 1 0 0 0 3 3 1 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 3R_14818989_14820109 3R 14818989 14820109 CG31043 gukh transcript overlap 1.863083164 14819939 4.176160338 14819659 4.25 14819659 0 0 0 0 0 0 2 1 0 0 0 0 4 4 0 0 0 0 1 0 0 0 0 0 3R_15015624_15015972 3R 15015624 15015972 CG31475 CG31475 transcript overlap 1.262677485 15015803 1.251054852 15015803 1.10625 15015803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_15131038_15131876 3R 15131038 15131876 CG3619 Dl transcript overlap 2.179513185 15131706 1.911392405 15131706 2.57375 15131706 0 0 0 0 0 0 3 3 3 3 2 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_15140852_15141125 3R 15140852 15141125 CG3619 Dl transcript overlap 2.131845842 15140957 2.710970464 15140957 3.3175 15140957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 3R_15146804_15147051 3R 15146804 15147051 CG3619 Dl transcript overlap 1.206896552 15146914 1.521097046 15146914 2.32875 15146914 0 0 0 0 0 0 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 3R_15151378_15151986 3R 15151378 15151986 CG3619 Dl TSS overlap 2.14198783 15151884 1.610759494 15151884 1.99625 15151749 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_15155533_15156312 3R 15155533 15156312 CG3619 Dl 3598 1.831643002 15155643 6.760548523 15155862 7.8525 15155862 0 1 1 0 0 0 3 2 2 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_15157497_15158780 3R 15157497 15158780 CG3619 Dl 5562 1.951318458 15158363 2.974683544 15158363 3.09 15158363 0 0 0 0 0 0 4 4 4 1 0 0 3 2 2 0 0 0 1 0 0 0 0 0 3R_15160250_15160530 3R 15160250 15160530 CG3619 Dl 8315 1.168356998 15160360 1.425105485 15160360 2.22625 15160360 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_15164424_15165483 3R 15164424 15165483 CG3619 Dl 12489 2.011156187 15164827 4.683544304 15164827 7.66 15164827 1 0 1 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 1 1 1 1 0 0 3R_15166283_15168070 3R 15166283 15168070 CG3619 Dl 14348 3.319472617 15167620 14.00949367 15167620 19.34625 15167620 1 0 1 0 0 0 3 2 2 2 2 0 2 2 2 1 1 0 2 2 0 0 0 0 3R_15170820_15172829 3R 15170820 15172829 CG3619 Dl 18885 1.516227181 15170930 5.386075949 15170930 9.0825 15170930 0 1 1 0 0 0 5 3 2 0 0 0 6 6 4 2 2 0 1 0 0 0 0 0 3R_15175796_15176900 3R 15175796 15176900 CG3581 CG3581 23571 4.708924949 15176218 28.87763713 15176218 27.0875 15176218 1 0 1 0 0 0 0 0 0 0 0 0 3 2 2 2 2 1 2 1 0 0 0 0 3R_15178516_15179066 3R 15178516 15179066 CG3581 CG3581 21405 1.667342799 15178623 2.764767932 15178623 3.0675 15178903 0 0 0 0 0 0 2 2 2 1 1 1 2 2 1 1 1 0 1 1 1 1 0 0 3R_15180125_15180403 3R 15180125 15180403 CG3581 CG3581 20068 0.797160243 15180235 1.878691983 15180235 2.475 15180235 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3R_15317983_15318237 3R 15317983 15318237 CG31175 Dys transcript overlap 1.367139959 15318093 2.838607595 15318093 3.71375 15318093 0 0 0 0 0 0 1 1 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_15356849_15357124 3R 15356849 15357124 CG31175 Dys transcript overlap 2.00811359 15356956 3.001054852 15356956 3.8075 15356956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_15616127_15616518 3R 15616127 15616518 CR31215 CR31215 176 1.439148073 15616237 3.183544304 15616237 3.415 15616237 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_15625264_15625823 3R 15625264 15625823 CG4608 bnl transcript overlap 1.247464503 15625374 3.002109705 15625653 3.295 15625653 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_15684586_15685630 3R 15684586 15685630 CG4583 ire-1 1070 1.90872211 15684975 3.94092827 15684975 3.23375 15684975 0 0 0 0 0 0 4 2 2 0 0 0 4 3 2 2 0 0 2 0 0 0 0 0 3R_15703176_15703539 3R 15703176 15703539 CG4703 Arc42 TSS overlap 2.087221095 15703439 2.044303797 15703439 2.88625 15703439 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_15730888_15731426 3R 15730888 15731426 CG4755 RhoGAP92B transcript overlap 1.122718053 15730928 1.811181435 15730928 2.4525 15731286 0 0 0 0 0 0 3 2 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_15756297_15757578 3R 15756297 15757578 CG4451 Hs6st transcript overlap 7.867139959 15756920 15.00527426 15756920 20.24 15756920 1 0 1 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 3 3 1 0 0 0 3R_15760265_15761892 3R 15760265 15761892 CG4451 Hs6st transcript overlap 5.710953347 15760787 8.0907173 15760787 12.305 15760787 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3R_15814071_15814622 3R 15814071 15814622 CG4451 Hs6st transcript overlap 1.272819473 15814461 2.193037975 15814181 3.52125 15814181 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_15820958_15821724 3R 15820958 15821724 CG4451 Hs6st transcript overlap 1.563894523 15821348 2.776371308 15821348 3.72375 15821348 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_15846367_15846646 3R 15846367 15846646 CG4433 CG4433 transcript overlap 0.989858012 15846477 2.385021097 15846477 3.0025 15846477 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_16101619_16101899 3R 16101619 16101899 CG5060 CG5060 transcript overlap 1.339756592 16101729 1.987341772 16101729 3.2575 16101729 0 0 0 0 0 0 3 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_16117563_16118996 3R 16117563 16118996 CG5067 cic TSS overlap 1.637931034 16117946 6.676160338 16117946 9.07 16117946 0 1 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 3R_16368496_16369600 3R 16368496 16369600 CG4257 Stat92E transcript overlap 2.801217039 16369161 7.081223629 16369161 7.78625 16369161 1 0 1 0 0 0 2 2 2 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 3R_16375977_16376973 3R 16375977 16376973 CG4257 Stat92E transcript overlap 2.698782961 16376766 7.601265823 16376247 10.845 16376247 1 0 1 0 0 0 2 1 0 0 0 0 5 5 1 1 0 0 0 0 0 0 0 0 3R_16377677_16378027 3R 16377677 16378027 CG4257 Stat92E transcript overlap 1.882352941 16377787 2.575949367 16377787 3.39 16377927 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_16387015_16387273 3R 16387015 16387273 CG5191 CG5191 transcript overlap 0.911764706 16387103 1.715189873 16387103 2.18 16387103 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_16388891_16389155 3R 16388891 16389155 CG5191 CG10877 CG5191 CG10877 transcript overlap 0.726166329 16388987 1.929324895 16388987 2.71625 16388987 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_16399276_16400886 3R 16399276 16400886 CG5412 CG5412 1844 2.922920892 16399386 3.516877637 16399386 5.26375 16399386 1 0 1 0 0 0 0 0 0 0 0 0 3 2 2 1 1 0 3 0 0 0 0 0 3R_16420382_16420620 3R 16420382 16420620 CG5206 bon transcript overlap 1.377281947 16420490 1.411392405 16420490 2.18875 16420490 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_16432913_16433193 3R 16432913 16433193 CG5206 bon transcript overlap 0.874239351 16433023 1.758438819 16433023 3.55375 16433023 0 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_16587936_16588274 3R 16587936 16588274 CG17838 CG17838 transcript overlap 1.850912779 16588104 1.716244726 16587972 2.89375 16588104 0 0 0 0 0 0 2 1 1 1 1 1 2 1 1 1 1 1 0 0 0 0 0 0 3R_16646890_16647405 3R 16646890 16647405 CG17271 CG17271 transcript overlap 0.892494929 16647305 2.833333333 16647305 3.89125 16647305 0 0 0 0 0 0 5 4 3 2 1 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_16655229_16656192 3R 16655229 16656192 CG17273 CG17273 transcript overlap 9.997971602 16655535 4.815400844 16655535 4.30875 16655535 0 0 0 0 0 0 4 3 3 2 2 2 3 3 3 1 0 0 1 0 0 0 0 0 3R_16693671_16693951 3R 16693671 16693951 CG3822 CG3822 1720 1.329614604 16693781 1.420886076 16693781 2.19 16693781 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_16922171_16922713 3R 16922171 16922713 CG3421 RhoGAP93B transcript overlap 3.351926978 16922279 2.260548523 16922279 2.15125 16922279 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_16926666_16928066 3R 16926666 16928066 CG7044 CG5745 CG7044 CG5745 TSS overlap 2.598377282 16927525 3.946202532 16927525 6.81375 16927525 1 0 1 0 0 0 4 1 1 0 0 0 3 3 2 1 1 0 1 0 0 0 0 0 3R_16953240_16953602 3R 16953240 16953602 CG5793 CG5793 TSS overlap 2.628803245 16953280 2.182489451 16953280 2.43375 16953420 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_16964058_16964579 3R 16964058 16964579 CG5802 CG5802 TSS overlap 14.27991886 16964363 3.050632911 16964363 4.24 16964363 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_17024741_17024875 3R 17024741 17024875 CG17299 SNF4Agamma transcript overlap 1.163286004 17024778 2.237341772 17024778 5.3425 17024778 0 1 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_17122239_17122792 3R 17122239 17122792 CR31400 Hsromega TSS overlap 2.626774848 17122623 2.039029536 17122345 2.3875 17122623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_17123625_17124405 3R 17123625 17124405 CR31400 Hsromega transcript overlap 3.081135903 17123735 1.535864979 17123958 2.19375 17123735 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_17125452_17125978 3R 17125452 17125978 CR31400 Hsromega transcript overlap 2.290060852 17125808 1.688818565 17125808 2.3025 17125808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_17126533_17126810 3R 17126533 17126810 CR31400 Hsromega transcript overlap 2.03346856 17126642 1.432489451 17126642 2.135 17126642 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17127366_17127896 3R 17127366 17127896 CR31400 Hsromega transcript overlap 2.121703854 17127726 1.622362869 17127476 2.24875 17127726 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_17128448_17129568 3R 17128448 17129568 CR31400 Hsromega transcript overlap 2.231237323 17128838 1.603375527 17129118 2.3075 17129118 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 3R_17130093_17131583 3R 17130093 17131583 CR31400 Hsromega transcript overlap 2.321501014 17130854 1.641350211 17131414 2.17375 17131134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 0 3R_17132665_17135611 3R 17132665 17135611 CR31400 Hsromega transcript overlap 2.470588235 17134710 1.797468354 17133590 2.48 17133590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_17136863_17137061 3R 17136863 17137061 CR31400 Hsromega 14518 1.698782961 17136919 1.549578059 17136919 1.81875 17136919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_17198966_17200017 3R 17198966 17200017 CG32491 mod(mdg4) transcript overlap 5.902636917 17199847 1.581223629 17199645 3.94125 17199645 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17205687_17206209 3R 17205687 17206209 CG7895 tin transcript overlap 1.69168357 17205790 4.595991561 17205790 2.05875 17205790 0 0 0 1 0 1 "Bodmer et al., 1990; Yin et al., 1997" 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17216798_17217334 3R 17216798 17217334 CG7902 bap 2193 0.931034483 17217167 2.610759494 17216888 2.7775 17216888 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_17238722_17239002 3R 17238722 17239002 CG6570 lbl transcript overlap 1.542596349 17238832 2.402953586 17238832 2.62 17238832 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_17273329_17273849 3R 17273329 17273849 CG6545 lbe 1287 1.04969574 17273679 1.518987342 17273399 2.79125 17273679 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_17284012_17284852 3R 17284012 17284852 CG6545 lbe 11970 1.361054767 17284402 5.042194093 17284402 7.0225 17284402 0 1 1 0 0 0 1 1 1 1 1 1 2 2 2 2 2 1 1 0 0 0 0 0 3R_17303737_17304268 3R 17303737 17304268 CG7922 CG7922 3779 1.409736308 17303847 1.760548523 17304127 3.3075 17303847 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17325003_17325554 3R 17325003 17325554 CG31179 CG31179 transcript overlap 2.395537525 17325384 4.203586498 17325384 4.045 17325384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3R_17360707_17360987 3R 17360707 17360987 CG15499 CG15499 2818 1.210953347 17360817 4.791139241 17360817 5.5625 17360817 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17415410_17415965 3R 17415410 17415965 CG18402 InR 9159 2.447261663 17415800 3.501054852 17415800 3.92625 17415800 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_17430948_17431753 3R 17430948 17431753 CR32929 mir-11 16493 3.126774848 17431588 3.453586498 17431299 3.13125 17431299 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17432445_17432924 3R 17432445 17432924 CR32929 mir-11 15322 2.118661258 17432649 3.067510549 17432791 3.20375 17432649 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_17439028_17439308 3R 17439028 17439308 CR32929 mir-11 8938 1.318458418 17439138 1.323839662 17439138 2.20125 17439138 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_17441707_17442420 3R 17441707 17442420 CR32929 mir-11 5826 2.745436105 17442103 8.493670886 17442103 10.6075 17442103 1 0 1 0 0 0 2 2 2 2 0 0 4 3 2 1 0 0 0 0 0 0 0 0 3R_17467679_17468767 3R 17467679 17468767 CG6376 E2f transcript overlap 1.879310345 17468048 2.597046414 17468320 2.86875 17468048 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_17479804_17480084 3R 17479804 17480084 CG6376 E2f transcript overlap 0.771805274 17479914 1.829113924 17479914 3.50875 17479914 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3R_17491269_17491902 3R 17491269 17491902 CG15497 CG15497 TSS overlap 2.623732252 17491456 3.934599156 17491456 4.9725 17491456 0 0 0 0 0 0 5 5 5 4 0 0 2 2 2 2 0 0 0 0 0 0 0 0 3R_17492669_17493206 3R 17492669 17493206 CG6349 DNApol-alpha180 transcript overlap 1.661257606 17493036 4.467299578 17493036 5.62 17493036 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_17540001_17540272 3R 17540001 17540272 CG31176 CG31176 transcript overlap 1.305273834 17540102 3.592827004 17540102 3.47875 17540102 0 0 0 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 1 1 1 0 0 0 3R_17545259_17546040 3R 17545259 17546040 CG31176 CG31176 TSS overlap 0.953346856 17545905 2.654008439 17545426 3.7925 17545426 0 0 0 0 0 0 2 2 1 1 0 0 2 1 1 1 1 0 1 0 0 0 0 0 3R_17575801_17576054 3R 17575801 17576054 CG31233 CG31233 transcript overlap 0.998985801 17575884 1.432489451 17575884 2.52125 17575884 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 3R_17584520_17584859 3R 17584520 17584859 CG31177 CG31177 transcript overlap 1.120689655 17584700 3.103375527 17584700 5.27125 17584700 0 1 1 0 0 0 3 3 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_17648159_17648489 3R 17648159 17648489 CG6703 Caki TSS overlap 2.364097363 17648339 2.058016878 17648339 2.89125 17648339 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17667418_17668507 3R 17667418 17668507 CG13416 CG13416 791 1.138945233 17668365 2.970464135 17667803 4.34125 17668085 0 0 0 0 0 0 2 2 2 1 1 1 2 2 2 2 1 1 1 0 0 0 0 0 3R_17680617_17681006 3R 17680617 17681006 CG6575 glec transcript overlap 1.663286004 17680727 1.843881857 17680727 2.0075 17680943 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_17861552_17861680 3R 17861552 17861680 CG6375 pit transcript overlap 2.205882353 17861586 1.824894515 17861586 1.1525 17861586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17870137_17870676 3R 17870137 17870676 CG10293 how transcript overlap 3.079107505 17870507 5.511603376 17870507 3.37125 17870507 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_17905870_17906220 3R 17905870 17906220 CG13408 CG13408 TSS overlap 2.855983773 17906120 1.487341772 17905980 2.6 17906120 0 0 0 0 0 0 1 1 1 1 0 0 2 1 1 1 1 0 1 0 0 0 0 0 3R_17924049_17924587 3R 17924049 17924587 CG13407 CG13407 4549 1.395537525 17924331 2.842827004 17924331 3.525 17924331 0 0 0 0 0 0 4 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 3R_17959578_17960721 3R 17959578 17960721 CG31163 CG31163 TSS overlap 2.287018256 17959618 2.563291139 17960275 2.8425 17960555 0 0 0 0 0 0 1 0 0 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 3R_17973222_17973730 3R 17973222 17973730 CG31163 CG31163 transcript overlap 1.511156187 17973588 2.363924051 17973588 3.8225 17973588 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_17978680_17979223 3R 17978680 17979223 CG31163 CG31163 transcript overlap 1.550709939 17979070 2.869198312 17978790 4.71375 17978790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_17989183_17989742 3R 17989183 17989742 CG31163 CG31163 transcript overlap 1.896551724 17989292 1.888185654 17989292 2.565 17989292 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18049111_18049382 3R 18049111 18049382 CG31163 CG31163 transcript overlap 1.555780933 18049221 2.504219409 18049221 2.985 18049221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18353300_18353849 3R 18353300 18353849 CG5346 CG5346 transcript overlap 1.603448276 18353410 3.261603376 18353410 4.7275 18353410 0 0 0 0 0 0 1 1 1 1 1 0 3 2 2 1 1 1 1 0 0 0 0 0 3R_18354246_18354375 3R 18354246 18354375 CG5346 CG5346 transcript overlap 1.96653144 18354276 2.431434599 18354276 2.72 18354276 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18373406_18373604 3R 18373406 18373604 CG5315 CG5315 TSS overlap 1.448275862 18373518 1.612869198 18373518 2.31125 18373518 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_18400079_18400342 3R 18400079 18400342 CG33110 CG33110 transcript overlap 1.004056795 18400172 1.099156118 18400172 1.93125 18400172 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_18406355_18407161 3R 18406355 18407161 CG6932 CSN6 TSS overlap 1.680527383 18406465 2.114978903 18406712 3.635 18406992 0 0 0 0 0 0 3 2 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_18492502_18493050 3R 18492502 18493050 CG17623 CG17623 2031 2.846855984 18492607 1.566455696 18492607 3.62375 18492607 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_18498743_18500676 3R 18498743 18500676 CG6954 CG6954 TSS overlap 3.312373225 18499676 4.380801688 18499951 3.90875 18499860 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 1 1 0 0 0 3R_18512019_18512221 3R 18512019 18512221 CG4919 Gclm transcript overlap 1.344827586 18512129 1.965189873 18512129 3.22625 18512129 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_18576083_18576390 3R 18576083 18576390 CG31152 CG31152 TSS overlap 2.229208925 18576285 1.746835443 18576170 2.06625 18576170 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18608928_18609480 3R 18608928 18609480 CG7029 CG7029 726 1.596348884 18609038 2.621308017 18609038 2.74375 18609038 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18614876_18615667 3R 18614876 18615667 CG7029 CG7029 transcript overlap 2.106490872 18614986 3.16350211 18614986 4.52875 18614986 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3R_18712454_18713010 3R 18712454 18713010 CG6669 klg 12014 1.321501014 18712561 2.626582278 18712841 2.3 18712561 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_18720022_18720597 3R 18720022 18720597 CG6669 klg 4427 1.973630832 18720147 1.863924051 18720147 2.19625 18720427 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_18853087_18853560 3R 18853087 18853560 CG4677 lmd 652 1.377281947 18853400 3.872362869 18853400 4.87375 18853400 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 3R_18863618_18864423 3R 18863618 18864423 CG13833 CG13833 2389 1.268762677 18863728 2.768987342 18863975 3.71375 18863975 0 0 0 0 0 0 3 2 1 1 1 0 2 1 1 0 0 0 2 0 0 0 0 0 3R_18864982_18865739 3R 18864982 18865739 CG13838 CG13838 2224 1.872210953 18865366 2.723628692 18865366 3.0675 18865366 0 0 0 0 0 0 0 0 0 0 0 0 3 3 1 0 0 0 1 0 0 0 0 0 3R_18868739_18869017 3R 18868739 18869017 CG13837 CG13837 695 1.312373225 18868847 2.726793249 18868847 5.26125 18868847 0 1 1 0 0 0 1 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_18870661_18870939 3R 18870661 18870939 CG17121 CG17121 transcript overlap 1.149087221 18870771 2.178270042 18870771 3.1125 18870771 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_18881463_18882233 3R 18881463 18882233 CG17119 CG17119 transcript overlap 2.090263692 18881853 2.670886076 18881853 2.71875 18881853 0 0 0 0 0 0 1 1 0 0 0 0 2 2 0 0 0 0 3 0 0 0 0 0 3R_18943301_18943651 3R 18943301 18943651 CG4656 CG4656 transcript overlap 6.001014199 18943551 2.48628692 18943551 2.95125 18943551 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 3R_18955463_18956452 3R 18955463 18956452 CG4637 hh transcript overlap 1.389452333 18955573 3.302742616 18955844 4.70625 18955844 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 3R_18957147_18957694 3R 18957147 18957694 CG4637 hh transcript overlap 2.096348884 18957245 8.003164557 18957245 9.1 18957245 1 0 1 0 0 0 2 1 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 3R_18959269_18959829 3R 18959269 18959829 CG4637 hh transcript overlap 1.435091278 18959379 2.335443038 18959379 2.57625 18959379 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_18964123_18964375 3R 18964123 18964375 CG4637 hh transcript overlap 1.820486815 18964231 2.024261603 18964231 2.76875 18964231 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_18967358_18968115 3R 18967358 18968115 CG4637 hh TSS overlap 2.297160243 18967849 3.734177215 18967849 3.2125 18967849 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 3R_18982632_18983194 3R 18982632 18983194 CG4620 unk transcript overlap 1.835699797 18983024 2.890295359 18982794 3.185 18982794 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 3R_19018827_19019617 3R 19018827 19019617 CG17894 cnc transcript overlap 2.45841785 19019204 12.46518987 19019204 14.1525 19019204 1 0 1 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 3R_19021189_19022009 3R 19021189 19022009 CG17894 cnc transcript overlap 1.385395538 19021540 5.506329114 19021540 7.505 19021540 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_19029093_19029578 3R 19029093 19029578 CG17894 CG4568 cnc fzo transcript overlap 0.910750507 19029479 1.621308017 19029479 2.86625 19029199 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_19077463_19078194 3R 19077463 19078194 CG6755 EloA transcript overlap 1.653144016 19077518 3.310126582 19078024 5.74125 19078024 0 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_19083981_19084582 3R 19083981 19084582 CG13827 CG13827 TSS overlap 7.125398512 19084040 2.3246878 19084414 2.869772999 19084040 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_19104489_19105228 3R 19104489 19105228 CG10868 orb transcript overlap 1.931987248 19104778 2.734870317 19104778 5.265232975 19104778 0 1 1 0 0 0 0 0 0 0 0 0 2 2 2 2 2 2 1 1 1 1 1 1 3R_19124440_19127283 3R 19124440 19127283 CG17077 pnt transcript overlap 1.939426142 19126273 9.065321806 19126043 12.78733572 19126043 0 1 1 0 0 0 6 4 4 2 2 0 7 5 3 3 2 0 2 1 0 0 0 0 3R_19129144_19129309 3R 19129144 19129309 CG17077 pnt transcript overlap 1.162592986 19129176 2.085494717 19129176 1.694145759 19129176 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_19140049_19141016 3R 19140049 19141016 CG17077 pnt transcript overlap 6.809776833 19140094 2.995196926 19140569 4.464755078 19140298 0 0 0 0 0 0 4 3 3 3 2 2 4 4 4 4 3 2 2 0 0 0 0 0 3R_19141296_19141574 3R 19141296 19141574 CG17077 pnt transcript overlap 1.674814028 19141406 1.748318924 19141406 1.964157706 19141406 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 3R_19169083_19170192 3R 19169083 19170192 CG17077 pnt transcript overlap 2.81402763 19169479 7.872238232 19169479 9.186379928 19169479 1 0 1 0 0 0 2 1 1 1 0 0 3 3 3 2 1 0 1 0 0 0 0 0 3R_19171281_19172083 3R 19171281 19172083 CG17077 pnt TSS overlap 1.767268863 19171681 2.921229587 19171681 3.928315412 19171681 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_19172275_19173633 3R 19172275 19173633 CG6768 DNApol-epsilon 280 2.972369819 19173451 6.821325648 19173451 7.864994026 19172921 1 0 1 0 0 0 0 0 0 0 0 0 3 3 3 2 1 0 1 0 0 0 0 0 3R_19459333_19459885 3R 19459333 19459885 CG31145 CG31145 transcript overlap 1.47077577 19459709 1.777137368 19459709 3.894862605 19459709 0 0 0 0 0 0 1 1 1 1 1 0 3 3 3 1 0 0 0 0 0 0 0 0 3R_19554629_19555182 3R 19554629 19555182 CG10365 CG10365 transcript overlap 1.95642933 19555019 4.083573487 19554739 4.762246117 19555019 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_19561275_19561608 3R 19561275 19561608 CG10367 Hmgcr transcript overlap 1.858660999 19561420 1.774255524 19561420 2.145758662 19561420 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_19584168_19584693 3R 19584168 19584693 CG10371 Plip transcript overlap 1.102019129 19584523 2.694524496 19584383 5.093189964 19584383 0 1 1 0 0 0 2 1 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_19607930_19608964 3R 19607930 19608964 CG10379 mbc transcript overlap 1.781083953 19608308 5.878001921 19608308 5.857825568 19608308 0 1 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_19652053_19652457 3R 19652053 19652457 CR31185 snRNA:U1:95Cc TSS overlap 2.015940489 19652164 1.856868396 19652291 2.72520908 19652291 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_19653502_19654229 3R 19653502 19654229 CR32866 snRNA:U1:95Cb TSS overlap 2.348565356 19653613 2.432276657 19654063 3.753882915 19654063 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 0 0 1 0 0 0 0 0 3R_19694717_19695486 3R 19694717 19695486 CG5212 Pli transcript overlap 1.361317747 19695104 2.132564841 19695104 4.894862605 19695104 0 0 0 0 0 0 3 2 2 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_19712130_19712969 3R 19712130 19712969 CG5212 Pli transcript overlap 2.244420829 19712800 6.297790586 19712520 8.33572282 19712520 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_19732364_19733135 3R 19732364 19733135 CG13598 sba transcript overlap 1.074388948 19732765 2.939481268 19732765 4.971326165 19732765 0 0 0 0 0 0 6 5 4 3 3 3 1 1 1 1 1 0 0 0 0 0 0 0 3R_19742964_19743953 3R 19742964 19743953 CG13598 sba transcript overlap 2.074388948 19743537 2.994236311 19743809 5.154121864 19743537 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 1 1 0 0 0 0 3R_19746448_19747000 3R 19746448 19747000 CG13598 sba transcript overlap 1.017003188 19746830 1.406340058 19746830 1.708482676 19746830 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 3R_19747830_19748314 3R 19747830 19748314 CG13598 sba transcript overlap 1.904357067 19748152 2.327569645 19748152 2.612903226 19748152 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 3R_19774109_19774319 3R 19774109 19774319 CG12268 CG12268 TSS overlap 1.431455898 19774149 1.616714697 19774149 2.397849462 19774149 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_19827154_19827414 3R 19827154 19827414 CG5405 KrT95D transcript overlap 1.52816153 19827264 2.988472622 19827264 1.707287933 19827264 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_19975213_19975491 3R 19975213 19975491 CG33338 p38c transcript overlap 1.239107333 19975323 1.658981748 19975323 2.271206691 19975323 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_19983102_19983880 3R 19983102 19983880 CG5501 Myo95E transcript overlap 1.298618491 19983212 2.634966378 19983436 4.778972521 19983436 0 0 0 0 0 0 4 3 3 3 0 0 2 2 2 0 0 0 2 1 0 0 0 0 3R_20046611_20046976 3R 20046611 20046976 CG31137 twin transcript overlap 1.702444208 20046882 3.443804035 20046754 4.937873357 20046754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_20085252_20085464 3R 20085252 20085464 CG5695 jar transcript overlap 1.417640808 20085294 2.009606148 20085294 2.973715651 20085294 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_20093869_20094116 3R 20093869 20094116 CG5695 jar transcript overlap 1.581296493 20093979 2.853025937 20093979 2.502986858 20093979 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_20120909_20121724 3R 20120909 20121724 CG6383 crb TSS overlap 1.741764081 20120996 2.342939481 20121276 2.903225806 20120996 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_20123036_20123872 3R 20123036 20123872 CG6383 crb transcript overlap 5.148777896 20123426 6.314121037 20123426 9.524492234 20123426 1 0 1 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 2 2 0 0 0 0 3R_20134728_20135267 3R 20134728 20135267 CG6383 crb transcript overlap 1.094580234 20134838 2.1882805 20134838 3.317801673 20134838 0 0 0 0 0 0 2 2 2 0 0 0 1 1 1 1 0 0 3 1 1 0 0 0 3R_20329480_20330266 3R 20329480 20330266 CG6798 nAcRbeta-96A 10557 1.31455898 20329590 2.195004803 20329590 2.814814815 20329816 0 0 0 0 0 0 3 3 1 1 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3R_20364345_20364624 3R 20364345 20364624 CG5789 CG5789 transcript overlap 1.367693943 20364455 2.504322767 20364455 3.002389486 20364455 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 3R_20365991_20366252 3R 20365991 20366252 CG5789 CG5789 transcript overlap 1.133900106 20366089 1.432276657 20366089 2.148148148 20366089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_20408224_20408568 3R 20408224 20408568 CG13624 CG13624 transcript overlap 1.954303932 20408477 1.972142171 20408477 3.326164875 20408477 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_20410888_20411042 3R 20410888 20411042 CG13625 CG13625 33 2.620616366 20410935 1.550432277 20410935 1.716845878 20410935 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_20445398_20445958 3R 20445398 20445958 CG13620 CG13620 transcript overlap 1.134962806 20445508 2.002881844 20445508 3.21385902 20445508 0 0 0 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 3R_20446465_20446730 3R 20446465 20446730 CG13620 CG13620 transcript overlap 1.121147715 20446575 1.8117195 20446575 2.246117085 20446575 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_20455646_20456228 3R 20455646 20456228 CG6668 atl transcript overlap 2.533475027 20455919 3.903938521 20455919 5.749103943 20455919 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_20552122_20552610 3R 20552122 20552610 CG6863 tok transcript overlap 1.84272051 20552206 2.171950048 20552206 2.759856631 20552206 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 1 0 0 1 0 0 0 0 0 3R_20574726_20575587 3R 20574726 20575587 CG6868 tld TSS overlap 2.413390011 20575112 4.362151777 20575112 9.102747909 20575112 1 0 1 1 0 1 "Kirov et al., 1994" 1 1 1 1 1 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_20702750_20703025 3R 20702750 20703025 CG31381 CG11089 CG31381 CG11089 TSS overlap 1.408076514 20702785 1.641690682 20702785 2.369175627 20702925 0 0 0 0 0 0 1 1 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3R_20808610_20809112 3R 20808610 20809112 CG13647 CG13647 12426 1.473963868 20808720 2.604226705 20808720 3.479091995 20808720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_20882052_20882766 3R 20882052 20882766 CG11819 CG11819 46 1.447396387 20882123 2.375600384 20882375 3.703703704 20882375 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 3R_20903153_20903433 3R 20903153 20903433 CG11920 CG11920 2549 0.646121148 20903263 2.109510086 20903263 2.235364397 20903263 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_20923765_20924045 3R 20923765 20924045 CG33096 CG33096 transcript overlap 1.488841658 20923875 2.065321806 20923875 4.016726404 20923875 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_20952928_20953222 3R 20952928 20953222 CG10238 CG10238 TSS overlap 2.374070138 20953090 1.833813641 20952962 3.204301075 20953090 0 0 0 0 0 0 1 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 3R_20963488_20964047 3R 20963488 20964047 CG13651 danr TSS overlap 1.390010627 20963871 2.215177714 20963871 3.377538829 20963734 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_20997965_20999868 3R 20997965 20999868 CG13661 CG13661 TSS overlap 1.544102019 20999698 4.131604227 20998624 6.927120669 20998624 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_21005313_21005807 3R 21005313 21005807 CG11849 dan 4928 1.493092455 21005637 1.667627281 21005637 2.158900836 21005423 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_21006611_21007590 3R 21006611 21007590 CG11849 dan 3145 1.089266738 21007111 2.325648415 21007111 2.456391876 21007111 0 0 0 0 0 0 3 2 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3R_21007899_21009043 3R 21007899 21009043 CG11849 dan 1692 2.709883103 21008313 3.251681076 21008313 3.580645161 21008593 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_21009439_21011031 3R 21009439 21011031 CG11849 dan TSS overlap 2.252922423 21009727 2.834774256 21009727 3.259259259 21009727 0 0 0 0 0 0 1 1 0 0 0 0 3 1 1 0 0 0 3 1 0 0 0 0 3R_21282412_21283234 3R 21282412 21283234 CG10772 Fur1 transcript overlap 1.98618491 21282799 2.74543708 21282799 4.219832736 21282799 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 3R_21297898_21298610 3R 21297898 21298610 CG10772 Fur1 transcript overlap 2.065887354 21298440 1.634005764 21298204 2.308243728 21298204 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21330112_21330391 3R 21330112 21330391 CG5107 CG5107 544 1.442082891 21330221 2.587896254 21330221 3.317801673 21330221 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_21441079_21441349 3R 21441079 21441349 CG4673 CG4673 transcript overlap 1.276301807 21441180 2.050912584 21441180 2.806451613 21441180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21458552_21459392 3R 21458552 21459392 CG17383 CG17383 4157 1.277364506 21458662 2.327569645 21459222 3.193548387 21458942 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_21462570_21462835 3R 21462570 21462835 CG17383 CG17383 714 2.296493092 21462680 1.963496638 21462680 2.637992832 21462680 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21487117_21488180 3R 21487117 21488180 CG5053 CG5053 TSS overlap 1.759829968 21487346 5.261287224 21487450 6.555555556 21487590 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 1 1 1 1 0 3R_21808777_21809204 3R 21808777 21809204 CG8318 Nf1 transcript overlap 1.12858661 21808817 3.173871278 21809038 3.161290323 21809038 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_21828182_21828480 3R 21828182 21828480 CG8333 HLHmgamma 2602 0.807651435 21828310 2.827089337 21828310 2.183990442 21828310 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21831646_21832397 3R 21831646 21832397 CG14548 HLHmbeta TSS overlap 2.004250797 21831667 3.067243036 21831947 3.256869773 21831947 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_21835665_21836994 3R 21835665 21836994 CG8337 malpha TSS overlap 5.167906482 21836308 15.05379443 21836308 14.72640382 21836554 1 0 1 0 0 0 2 2 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 3R_21840795_21841342 3R 21840795 21841342 CG8342 m1 348 1.198724761 21840905 1.81364073 21840905 3.249701314 21840905 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21843311_21843988 3R 21843311 21843988 CG6104 m2 119 1.906482465 21843350 2.551392891 21843557 3.372759857 21843350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21848865_21849386 3R 21848865 21849386 CG6099 m4 829 1.866099894 21849255 3.016330451 21849255 4.414575866 21849255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_21849908_21851022 3R 21849908 21851022 CG6099 m4 TSS overlap 5.173219979 21850298 11.73583093 21850578 16.40740741 21850578 1 0 1 0 0 0 2 2 2 2 2 1 2 1 1 1 1 1 2 1 0 0 0 0 3R_21852499_21854111 3R 21852499 21854111 CG6096 HLHm5 1346 5.21466525 21852844 13.25840538 21852844 16.27001195 21852844 1 0 1 0 0 0 2 2 2 2 2 1 4 4 4 4 4 2 1 1 1 1 1 0 3R_21855212_21855637 3R 21855212 21855637 CG6096 HLHm5 TSS overlap 2.298618491 21855397 2.067243036 21855259 3.029868578 21855259 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_21856369_21856928 3R 21856369 21856928 CG6096 HLHm5 912 1.459086079 21856758 2.312199808 21856758 3.180406213 21856758 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_21858044_21858874 3R 21858044 21858874 CG8354 m6 TSS overlap 1.589798087 21858433 4.444764649 21858433 4.688172043 21858433 0 0 0 0 0 0 5 4 4 4 2 1 4 4 4 4 4 4 1 1 0 0 0 0 3R_21861181_21862991 3R 21861181 21862991 CG8365 E(spl) TSS overlap 5.516471838 21862064 15.61767531 21862064 16.41696535 21862064 1 0 1 1 0 1 0 8 6 5 5 3 2 3 2 2 2 2 1 6 4 1 1 1 1 3R_21865619_21866301 3R 21865619 21866301 CG8365 E(spl) TSS overlap 1.925611052 21866069 3.494716619 21866131 5.605734767 21866131 0 1 1 0 0 1 unpublished 1 1 1 1 1 1 2 2 2 2 2 2 0 0 0 0 0 0 3R_21877881_21878719 3R 21877881 21878719 CG14542 CG6095 CG14542 CG6095 TSS overlap 3.060573858 21878413 3.292026897 21878271 5.338112306 21878271 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_22297985_22298252 3R 22297985 22298252 CG6490 CG6490 transcript overlap 1.708820404 22298095 1.540826129 22298095 1.941457587 22298095 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_22373137_22373641 3R 22373137 22373641 CG5462 scrib transcript overlap 1.413390011 22373247 2.800192123 22373247 3.29390681 22373247 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_22376022_22376557 3R 22376022 22376557 CG5462 scrib transcript overlap 2.18597237 22376108 3.172910663 22376108 3.630824373 22376108 0 0 0 0 0 0 3 2 2 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 3R_22378149_22378389 3R 22378149 22378389 CG5462 scrib transcript overlap 1.301806589 22378259 2.826128722 22378259 2.964157706 22378259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_22487783_22488316 3R 22487783 22488316 CG14249 beat-VII transcript overlap 1.041445271 22488146 3.428434198 22488146 3.967741935 22488146 0 0 0 0 0 0 1 1 1 1 0 0 2 2 1 1 1 0 2 1 0 0 0 0 3R_22541130_22541648 3R 22541130 22541648 CG6425 CG6425 transcript overlap 1.005313496 22541479 2.918347743 22541241 4.131421744 22541241 0 0 0 0 0 0 3 2 2 1 0 0 3 2 1 0 0 0 0 0 0 0 0 0 3R_22621405_22623312 3R 22621405 22623312 CG5490 Tl 1453 2.78639745 22622879 3.492795389 22622358 3.78255675 22622358 0 0 0 0 0 0 2 2 2 2 2 0 5 5 4 4 4 1 4 1 0 0 0 0 3R_22623855_22624134 3R 22623855 22624134 CG5490 Tl 631 0.968119022 22623965 2.04418828 22623965 3.204301075 22623965 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_22624600_22624707 3R 22624600 22624707 CG5490 Tl 58 1.401700319 22624618 1.426512968 22624618 2.456391876 22624618 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_22627175_22627616 3R 22627175 22627616 CG5490 Tl transcript overlap 1.718384697 22627473 2.008645533 22627473 1.794504182 22627286 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_22701558_22701826 3R 22701558 22701826 CG14251 ms(3)K81 TSS overlap 1.737513284 22701598 1.814601345 22701730 2.240143369 22701730 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_22708371_22709105 3R 22708371 22709105 CG5507 T48 transcript overlap 2.140276302 22708657 4.028818444 22708936 2.752688172 22708657 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 3R_22712665_22713438 3R 22712665 22713438 CG5507 T48 transcript overlap 1.792773645 22712775 3.984630163 22712775 4.493428913 22712775 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_22735660_22736216 3R 22735660 22736216 CG5507 T48 transcript overlap 1.863974495 22735770 2.277617675 22736050 3.146953405 22735770 0 0 0 0 0 0 3 3 3 1 1 0 2 1 1 1 1 0 0 0 0 0 0 0 3R_22737897_22738806 3R 22737897 22738806 CG6338 Ets97D TSS overlap 2.082890542 22738544 2.414985591 22738544 4.189964158 22738544 0 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_22917123_22917400 3R 22917123 22917400 CG15884 CG15884 278 1.191285866 22917233 5.314121037 22917233 5.350059737 22917233 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_23064038_23065079 3R 23064038 23065079 CG5923 CG31064 DNApol-alpha73 CG31064 TSS overlap 2.651434644 23064791 2.242074928 23064791 3.37037037 23064791 0 0 0 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_23078581_23079176 3R 23078581 23079176 CG5930 TfIIA-L transcript overlap 1.581296493 23078808 3.670509126 23078808 5.151732378 23078808 0 1 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_23266779_23268867 3R 23266779 23268867 CG13978 CG13978 21044 2.530286929 23267379 3.648414986 23267379 4.61051374 23267099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_23270862_23271421 3R 23270862 23271421 CG13978 CG13978 18490 1.726886291 23271252 5.711815562 23271252 7.971326165 23271252 0 1 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 3R_23504979_23505325 3R 23504979 23505325 CG12883 CG12883 TSS overlap 1.469713071 23505159 1.987512008 23505019 2.876941458 23505019 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_23742413_23742776 3R 23742413 23742776 CG12261 mRpS22 TSS overlap 3.447396387 23742542 1.620557157 23742542 2.548387097 23742678 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_23756702_23757514 3R 23756702 23757514 CG5508 CG5508 transcript overlap 2.437832094 23757092 2.965417867 23757092 3.131421744 23757092 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 3R_23784493_23784754 3R 23784493 23784754 CG4884 CG4884 519 1.869287991 23784603 1.799231508 23784603 2.708482676 23784603 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_23786316_23786652 3R 23786316 23786652 CG31054 CG31054 TSS overlap 3.04357067 23786351 2.323727185 23786482 2.850657109 23786351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_23788827_23789298 3R 23788827 23789298 CG4849 CG31131 CG4849 CG31131 TSS overlap 3.181721573 23789128 2.375600384 23789128 2.427718041 23789128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_23933902_23934143 3R 23933902 23934143 CG12425 CG12425 38403 0.726886291 23934011 1.185398655 23934011 1.859020311 23934011 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_24013429_24013716 3R 24013429 24013716 CG12425 CG12425 40883 1.495217853 24013537 3.74351585 24013537 4.53046595 24013537 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_24142415_24142695 3R 24142415 24142695 CG14066 larp 11310 1.448459086 24142525 3.017291066 24142525 4.09916368 24142525 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_24146659_24146877 3R 24146659 24146877 CG14066 larp transcript overlap 1.602550478 24146747 2.003842459 24146747 2.346475508 24146747 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_24152375_24152930 3R 24152375 24152930 CG14066 larp transcript overlap 1.673751328 24152485 2.169068204 24152762 2.46953405 24152485 0 0 0 0 0 0 2 2 1 1 1 0 4 2 2 1 1 0 0 0 0 0 0 0 3R_24161932_24162177 3R 24161932 24162177 CG14065 CG14065 1692 2.692879915 24162038 2.62920269 24162038 2.489844683 24162038 0 0 0 0 0 0 1 1 1 1 1 0 2 1 1 1 1 0 1 0 0 0 0 0 3R_24351589_24352148 3R 24351589 24352148 CG33103 Ppn transcript overlap 1.284803401 24351699 4.337175793 24351699 5.3130227 24351699 0 1 1 0 0 0 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_24366358_24366915 3R 24366358 24366915 CG33103 Ppn 305 1.420828905 24366468 2.496637848 24366468 2.3739546 24366748 0 0 0 0 0 0 2 2 2 1 0 0 3 3 2 2 0 0 0 0 0 0 0 0 3R_24372795_24373287 3R 24372795 24373287 CG12413 CG12413 2271 2.436769394 24372897 3.183477426 24373119 3.721624851 24373119 0 0 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 3R_24380701_24380971 3R 24380701 24380971 CG14063 CG14063 616 1.121147715 24380801 3.514889529 24380801 3.470728793 24380801 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 3R_24399740_24400296 3R 24399740 24400296 CG10002 fkh 10509 2.062699256 24400126 1.814601345 24400126 2.682198327 24399850 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 2 0 1 1 1 1 1 0 3R_24411900_24412445 3R 24411900 24412445 CG10002 fkh 1095 2.360255048 24412280 3.444764649 24412280 5.063321386 24412001 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 3R_24419083_24419327 3R 24419083 24419327 CG10009 Noa36 5674 1.282678002 24419161 1.916426513 24419161 2.150537634 24419161 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_24420789_24421287 3R 24420789 24421287 CG10009 Noa36 3714 1.145589798 24420899 1.878962536 24420899 3.005973716 24420899 0 0 0 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_24422106_24422386 3R 24422106 24422386 CG10009 Noa36 2615 1.246546227 24422216 2.413064361 24422216 2.925925926 24422216 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 3R_24425828_24426178 3R 24425828 24426178 CG9983 Hrb98DE transcript overlap 3.193411265 24426078 2.110470701 24425938 1.603345281 24426078 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_24457342_24457859 3R 24457342 24457859 CG10011 CG10011 transcript overlap 1.712008502 24457452 3.352545629 24457452 5.231780167 24457452 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_24569884_24570320 3R 24569884 24570320 CG10001 AR-2 29 1.374070138 24570151 2.083573487 24570151 2.464755078 24570151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_24657191_24657375 3R 24657191 24657375 CG1520 WASp transcript overlap 1.193411265 24657240 1.692603266 24657240 2.17562724 24657240 0 0 0 0 0 0 2 2 2 2 2 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_24684261_24684502 3R 24684261 24684502 CG31048 CG1448 CG31048 inx3 transcript overlap 2.550478215 24684333 1.567723343 24684333 1.84348865 24684333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_24684712_24684852 3R 24684712 24684852 CG31048 CG1448 CG31048 inx3 transcript overlap 1.706695005 24684752 1.317963497 24684752 1.635603345 24684752 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_24717424_24717783 3R 24717424 24717783 CG33553 Doa transcript overlap 1.334750266 24717534 1.963496638 24717693 2.273596177 24717693 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_24852827_24853442 3R 24852827 24853442 CG1951 CG1442 CG1951 CG1442 TSS overlap 1.793836344 24852873 2.225744476 24852992 3.062126643 24852992 0 0 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 3R_24864919_24866151 3R 24864919 24866151 CG1954 Pkc98E transcript overlap 2.617428268 24864959 3.761767531 24865499 5.295101553 24865499 1 0 1 0 0 0 2 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 3R_24898471_24900384 3R 24898471 24900384 CG1401 cul-5 9590 2.469713071 24898581 3.148895293 24899934 3.781362007 24898861 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_24912390_24913996 3R 24912390 24913996 CG11873 CG11873 8713 1.888416578 24912773 2.830931796 24912773 5.04181601 24913546 0 1 1 0 0 0 3 1 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3R_24972381_24972941 3R 24972381 24972941 CG14511 CG14511 TSS overlap 1.221041445 24972631 3.035542747 24972491 5.17921147 24972631 0 1 1 0 0 0 1 1 1 1 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3R_25041340_25041676 3R 25041340 25041676 CR33590 mir-279 TSS overlap 1.412327311 25041506 1.756003842 25041375 2.135005974 25041375 0 0 0 0 0 0 2 2 2 0 0 0 3 3 3 1 0 0 0 0 0 0 0 0 3R_25080569_25081647 3R 25080569 25081647 CG1395 stg TSS overlap 3.482465462 25080672 2.195004803 25081355 2.676224612 25080951 0 0 0 0 0 1 "Casal and Leptin, 1996 " 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_25083771_25084051 3R 25083771 25084051 CG1395 stg 2269 1.713071201 25083881 3.097982709 25083881 3.063321386 25083881 0 0 0 0 0 1 "Casal and Leptin, 1996 " 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_25085366_25086203 3R 25085366 25086203 CG1395 stg 3864 2.054197662 25085755 4.439000961 25085755 3.966547192 25085755 0 0 0 0 0 1 "Casal and Leptin, 1996 " 1 1 1 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_25088278_25090346 3R 25088278 25090346 CG1395 stg 6776 9.156216791 25089092 4.089337176 25088388 4.369175627 25089364 0 0 0 0 0 1 "Casal and Leptin, 1996 " 1 0 0 0 0 0 3 2 2 2 0 0 3 1 1 0 0 0 3R_25111297_25112152 3R 25111297 25112152 CG14506 CG14506 10799 1.381509033 25111687 2.471661864 25111957 3.063321386 25111957 0 0 0 0 0 0 2 2 2 2 0 0 2 2 2 2 0 0 4 3 2 1 0 0 3R_25123112_25123945 3R 25123112 25123945 CG14506 CG14506 161 1.773645058 25123500 8.199807877 25123500 13.08482676 25123500 0 1 1 0 0 0 3 3 2 1 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3R_25129411_25130489 3R 25129411 25130489 CG14506 CG14506 6460 1.210414453 25130043 4.892411143 25130043 5.743130227 25130043 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 4 4 3 1 0 0 3R_25131044_25131499 3R 25131044 25131499 CG14506 CG14506 8093 1.380446334 25131357 2.888568684 25131357 2.795698925 25131357 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 3R_25132592_25135295 3R 25132592 25135295 CG14506 CG14506 9641 3.810839532 25134594 8.472622478 25134594 10.34767025 25132702 1 0 1 0 0 0 2 2 2 1 0 0 7 7 7 4 0 0 0 0 0 0 0 0 3R_25231968_25232209 3R 25231968 25232209 CG11516 CG11516 20215 1.083953241 25232039 1.741594621 25232039 2.04181601 25232039 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_25283329_25283539 3R 25283329 25283539 CG2005 Ptp99A transcript overlap 1.564293305 25283369 2.964457253 25283369 4.004778973 25283369 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_25285478_25285943 3R 25285478 25285943 CG2005 Ptp99A transcript overlap 2.438894793 25285795 2.187319885 25285795 2.005973716 25285585 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_25286761_25287064 3R 25286761 25287064 CG2005 Ptp99A transcript overlap 1.739638682 25286871 3.544668588 25286871 2.246117085 25286871 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 3R_25318816_25319480 3R 25318816 25319480 CG2310 CG2310 TSS overlap 2.459086079 25319274 3.317963497 25318923 4.943847073 25318923 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_25329049_25329320 3R 25329049 25329320 CG2304 Trc8 transcript overlap 2.227417641 25329150 2.739673391 25329150 4.240143369 25329150 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_25342461_25343240 3R 25342461 25343240 CG2014 CG2014 894 1.503719447 25342545 2.322766571 25342821 2.474313023 25342545 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_25349578_25350107 3R 25349578 25350107 CG2014 CG2014 8011 1.658873539 25349968 2.878962536 25349968 3.181600956 25349968 0 0 0 0 0 0 2 2 2 2 2 2 2 1 1 1 1 1 0 0 0 0 0 0 3R_25373440_25374228 3R 25373440 25374228 CG1897 Dr 7881 1.546227418 25374065 6.063400576 25374065 8.585424134 25374065 0 1 1 0 0 1 "d'Alessio and Frasch, 1996; von Ohlen and Doe, 2000" 2 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 3R_25385114_25385923 3R 25385114 25385923 CG1897 Dr transcript overlap 2.469713071 25385780 2.558117195 25385504 3.158900836 25385504 0 0 0 0 0 1 "d'Alessio and Frasch, 1996; von Ohlen and Doe, 2000" 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 3R_25481649_25482183 3R 25481649 25482183 CG18741 DopR2 transcript overlap 1.448459086 25481741 2.168107589 25481741 3.03823178 25481741 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_25597554_25598076 3R 25597554 25598076 CG33956 kay transcript overlap 3.162592986 25597930 2.284341979 25597664 1.874551971 25597930 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 0 0 0 3R_25598659_25598846 3R 25598659 25598846 CG33956 kay transcript overlap 1.367693943 25598691 1.634005764 25598691 1.390681004 25598691 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_25600359_25600633 3R 25600359 25600633 CG33956 kay transcript overlap 2.001062699 25600468 3.292026897 25600468 4.150537634 25600468 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3R_25665581_25665861 3R 25665581 25665861 CG15510 CG15510 3909 1.149840595 25665691 1.340057637 25665691 1.861409797 25665691 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_25740099_25740222 3R 25740099 25740222 CG15520 capa 49 2.359192349 25740131 1.411143132 25740131 1.927120669 25740131 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_25811873_25812433 3R 25811873 25812433 CG7896 CG7896 transcript overlap 1.479277365 25812263 1.465898175 25812263 2.388291517 25812263 0 0 0 0 0 0 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_25833937_25834069 3R 25833937 25834069 CG7917 CG7912 Nlp CG7912 transcript overlap 1.236981934 25833973 1.935638809 25833973 1.933094385 25833973 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_25847557_25848231 3R 25847557 25848231 CG7921 Mgat2 TSS overlap 2.153028693 25848131 2.334293948 25847632 3.413381123 25847632 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3R_25866089_25867448 3R 25866089 25867448 CG17957 Sry-alpha TSS overlap 2.356004251 25867279 3.624399616 25866866 5.660692951 25866452 1 0 1 0 0 0 3 2 2 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 3R_25983124_25983391 3R 25983124 25983391 CG11498 CG11498 393 1.429330499 25983234 1.690682037 25983234 2.559139785 25983234 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_26077294_26078043 3R 26077294 26078043 CG9682 CG9682 transcript overlap 9.444208289 26077904 2.498559078 26077904 3.531660693 26077624 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_26101864_26102143 3R 26101864 26102143 CG15532 hdc 1513 1.356004251 26101974 2.491834774 26101974 2.894862605 26101974 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_26214327_26214579 3R 26214327 26214579 CG1469 Fer2LCH transcript overlap 1.824654623 26214433 2.919308357 26214433 1.82437276 26214433 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_26284446_26284704 3R 26284446 26284704 CG2224 CG2224 transcript overlap 1.334750266 26284534 2.751200768 26284534 4.344086022 26284534 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_26393760_26394792 3R 26393760 26394792 CG1539 tmod transcript overlap 2.130712009 26394623 3.035542747 26394094 4.401433692 26394374 0 0 0 0 0 0 1 1 1 1 0 0 2 2 0 0 0 0 1 1 0 0 0 0 3R_26580423_26581207 3R 26580423 26581207 CG11315 CG11315 8413 1.442082891 26580507 4.398655139 26580763 2.661887694 26580763 0 0 0 0 0 1 "Lai et al., 1991" 0 0 0 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 3R_26587892_26588448 3R 26587892 26588448 CG1322 zfh1 3200 1.781083953 26588000 3.550432277 26588000 4.715651135 26588000 0 0 0 0 0 1 "Lai et al., 1991" 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3R_26589558_26590308 3R 26589558 26590308 CG1322 zfh1 1340 0.916046759 26590162 4.405379443 26589932 5.591397849 26589932 0 1 1 0 0 1 "Lai et al., 1991" 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 0 0 3R_26591763_26591973 3R 26591763 26591973 CG1322 zfh1 transcript overlap 2.598299681 26591803 2.257444765 26591803 3.493428913 26591803 0 0 0 0 0 1 "Lai et al., 1991" 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 3R_26592529_26593072 3R 26592529 26593072 CG1322 zfh1 transcript overlap 2.01487779 26592636 3.538904899 26592916 6.640382318 26592916 1 0 1 0 0 1 "Lai et al., 1991" 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3R_26596029_26596781 3R 26596029 26596781 CG1322 zfh1 transcript overlap 1.902231668 26596337 3.195004803 26596137 1.847072879 26596337 0 0 0 0 0 1 "Lai et al., 1991" 3 2 2 1 1 1 4 3 2 2 2 2 1 0 0 0 0 0 3R_26607274_26608079 3R 26607274 26608079 CG1322 zfh1 transcript overlap 2.392136026 26607661 4.071085495 26607661 6.946236559 26607661 1 0 1 0 0 1 "Lai et al., 1991" 2 2 1 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 3R_26608328_26608606 3R 26608328 26608606 CG1322 zfh1 transcript overlap 1.066950053 26608438 1.450528338 26608438 1.289127838 26608438 0 0 0 0 0 1 "Lai et al., 1991" 0 0 0 0 0 0 3 2 2 2 2 2 0 0 0 0 0 0 3R_26675168_26675975 3R 26675168 26675975 CG1378 tll 2062 2.862911796 26675278 3.46685879 26675278 5.112305854 26675558 1 0 1 0 0 0 "Liawa and Lengyel, 1993" 1 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 1 1 3R_26677406_26678036 3R 26677406 26678036 CG1378 tll 1 1.670563231 26677796 2.744476465 26677796 3.799283154 26677516 0 0 0 0 0 0 "Liawa and Lengyel, 1993" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_26681533_26682349 3R 26681533 26682349 CG1378 tll 3496 1.921360255 26681906 4.04803074 26682186 6.284348865 26682186 0 1 1 0 0 0 "Liawa and Lengyel, 1993" 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_26729662_26730119 3R 26729662 26730119 CG33483 CG33483 2505 1.78639745 26729765 2.349663785 26729765 2.821983274 26729765 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 1 0 1 0 0 0 0 0 3R_26738195_26738359 3R 26738195 26738359 CG1447 Ptx1 251 5.507970244 26738216 2.848222863 26738216 2.032258065 26738216 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_26745336_26745612 3R 26745336 26745612 CG1447 Ptx1 transcript overlap 0.787460149 26745444 2.105667627 26745444 2.614097969 26745444 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 3R_26747171_26748512 3R 26747171 26748512 CG1447 Ptx1 transcript overlap 1.584484591 26748344 2.710854947 26747527 2.788530466 26747527 0 0 0 0 0 0 2 2 2 2 2 1 7 6 5 3 1 1 3 1 0 0 0 0 3R_26753641_26753921 3R 26753641 26753921 CG1447 Ptx1 transcript overlap 1.269925611 26753751 1.455331412 26753751 2.33213859 26753751 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 3R_26803733_26803975 3R 26803733 26803975 CG12073 5-HT7 transcript overlap 1.147715197 26803841 3.117195005 26803841 4.309438471 26803841 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_26825956_26826442 3R 26825956 26826442 CG12073 5-HT7 transcript overlap 1.168969182 26826054 2.585975024 26826054 2.547192354 26826054 0 0 0 0 0 0 2 2 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 3R_26886930_26887065 3R 26886930 26887065 CG2048 dco TSS overlap 9.435706695 26886968 1.639769452 26886968 0.927120669 26886968 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_27018398_27019514 3R 27018398 27019514 CG31004 CG31004 transcript overlap 2.405951116 27019344 3.1623439 27018786 4.082437276 27018786 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 3R_27020338_27020613 3R 27020338 27020613 CG31004 CG31004 transcript overlap 2.899043571 27020448 1.924111431 27020448 2.753882915 27020448 0 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 3R_27047168_27048003 3R 27047168 27048003 CG12054 CG12054 transcript overlap 1.54303932 27047278 2.710854947 27047557 3.719235364 27047557 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_27048807_27049570 3R 27048807 27049570 CG12054 CG12054 transcript overlap 1.307120085 27049190 2.833813641 27049190 4.162485066 27049190 0 0 0 0 0 0 3 1 1 1 1 1 3 3 3 1 1 1 1 0 0 0 0 0 3R_27077746_27078208 3R 27077746 27078208 CG31005 CG31005 transcript overlap 1.341126461 27077829 1.987512008 27078109 2.733572282 27077829 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3R_27098644_27099408 3R 27098644 27099408 CG15555 CG15555 7192 1.594048884 27098981 3.321805956 27098981 2.602150538 27098981 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 3R_27155347_27155597 3R 27155347 27155597 CG11339 CG11339 21196 1.604675877 27155457 1.368876081 27155457 2.382317802 27155457 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 3R_27221213_27222017 3R 27221213 27222017 CG1609 Gcn2 TSS overlap 1.386822529 27221427 2.840537944 27221567 3.580645161 27221427 0 0 0 0 0 0 2 1 1 0 0 0 2 1 1 0 0 0 2 0 0 0 0 0 3R_27280166_27280417 3R 27280166 27280417 CG17998 Gprk2 transcript overlap 1.003188098 27280276 1.759846302 27280276 2.039426523 27280276 0 0 0 0 0 0 3 3 1 1 0 0 2 2 2 1 0 0 0 0 0 0 0 0 3R_27376622_27377150 3R 27376622 27377150 CG1499 CG1499 transcript overlap 1.40063762 27376982 2.693563881 27376707 4.985663082 27376982 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_27414412_27414613 3R 27414412 27414613 CG1635 CG1635 transcript overlap 1.527098831 27414443 2.225744476 27414443 3.197132616 27414443 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 3R_27436327_27436513 3R 27436327 27436513 CG11525 CycG transcript overlap 1.579171095 27436413 1.958693564 27436413 2.145758662 27436413 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 3R_27511548_27511817 3R 27511548 27511817 CG11550 CG11550 5946 0.738575983 27511652 2.290105668 27511652 2.720430108 27511652 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3R_27515286_27515566 3R 27515286 27515566 CG11550 CG11550 9684 1.595111583 27515396 2.467819404 27515396 2.991636798 27515396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_27530794_27531066 3R 27530794 27531066 CG34046 CG34046 3788 1.12858661 27530896 2.007684918 27530896 2.84348865 27530896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3R_27564602_27565704 3R 27564602 27565704 CG1873 Ef1alpha100E transcript overlap 1.55685441 27564992 3.676272815 27564712 5.001194743 27564712 0 1 1 0 0 0 2 1 1 0 0 0 3 2 1 0 0 0 1 0 0 0 0 0 3R_27677890_27678730 3R 27677890 27678730 CG31000 heph transcript overlap 2.024442083 27678000 2.996157541 27678280 4.289127838 27678280 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_27688952_27689215 3R 27688952 27689215 CG31000 heph transcript overlap 1.18597237 27689045 2.053794428 27689045 2.292712067 27689045 0 0 0 0 0 0 2 2 2 2 1 1 3 3 3 3 3 3 0 0 0 0 0 0 3R_27727991_27728831 3R 27727991 27728831 CG31000 heph transcript overlap 1.911795962 27728648 2.317002882 27728648 2.534050179 27728648 0 0 0 0 0 0 1 0 0 0 0 0 3 2 2 2 1 0 1 0 0 0 0 0 3R_27763217_27764007 3R 27763217 27764007 CG31000 heph transcript overlap 1.797024442 27763837 3.286263208 27763837 3.892473118 27763837 0 0 0 0 0 0 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 3R_27817517_27817672 3R 27817517 27817672 CG31000 heph transcript overlap 1.110520723 27817589 9.066282421 27817589 11.72401434 27817589 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 3R_27837780_27838894 3R 27837780 27838894 CG31000 heph 18780 1.490967056 27837886 2.295869356 27837886 2.487455197 27838166 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 2 1 1 0 0 0 3R_27852142_27852422 3R 27852142 27852422 CG2053 CG2053 11673 1.503719447 27852252 1.935638809 27852252 2.166069295 27852252 0 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4_76522_77315 4 76522 77315 CG2125 ci transcript overlap 9.421891605 77162 4.349663785 77162 5.709677419 77162 1 0 1 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 4_79233_79865 4 79233 79865 CG2125 ci 1566 1.482465462 79698 2.848222863 79698 2.501792115 79698 0 0 0 0 0 0 2 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 4_170834_170971 4 170834 170971 CG32006 CG32006 46 0.909670563 170886 1.6753122 170886 1.842293907 170886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4_426404_426961 4 426404 426961 CG2052 CG2052 12764 1.379383634 426512 3.367915466 426792 4.72520908 426512 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4_521718_522277 4 521718 522277 CG1449 zfh2 1824 1.396386823 521827 2.207492795 521827 2.471923536 521827 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4_523376_524090 4 523376 524090 CG1449 zfh2 11 1.159404888 524004 2.334293948 523758 3.140979689 523758 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4_529936_530712 4 529936 530712 CG1449 zfh2 transcript overlap 1.337938363 530326 3.270893372 530326 3.887694146 530046 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 4_608747_609021 4 608747 609021 CG1909 CG1909 transcript overlap 1.244420829 608851 1.772334294 608851 2.026284349 608851 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4_646318_646567 4 646318 646567 CG1901 mav 38 1.573857598 646347 1.42074928 646347 2.181600956 646347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4_728700_728979 4 728700 728979 CG1464 ey transcript overlap 1.92879915 728809 2.534101825 728809 2.241338112 728809 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4_755730_756253 4 755730 756253 CG32019 bt transcript overlap 2.938363443 755819 2.349663785 755819 2.679808841 755819 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 4_853185_853715 4 853185 853715 CG11153 Sox102F transcript overlap 1.002125399 853556 1.702209414 853276 2.691756272 853276 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4_854204_854528 4 854204 854528 CG11153 Sox102F TSS overlap 1.591923486 854254 2.121998079 854375 2.808841099 854375 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 4_956512_956954 4 956512 956954 CG11144 Glu-RA 138 1.637619554 956624 1.667627281 956624 2.346475508 956624 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 4_1039078_1039612 4 1039078 1039612 CG11081 plexA transcript overlap 1.65674814 1039443 1.637848223 1039169 2.470728793 1039443 0 0 0 0 0 0 3 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 4_1147370_1147643 4 1147370 1147643 CG11155 CG11155 transcript overlap 1.227417641 1147473 2.887608069 1147473 3.219832736 1147473 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_135551_136107 X 135551 136107 CG3114 ewg transcript overlap 1.445270988 135659 1.390009606 135938 2.109916368 135659 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_225782_227200 X 225782 227200 CG3796 ac TSS overlap 1.538788523 226732 4.341018252 226847 6.272401434 226847 0 1 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 X_232059_232333 X 232059 232333 CG3796 ac 5206 1.267800213 232169 2.135446686 232169 3.103942652 232169 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_238392_238672 X 238392 238672 CG3796 ac 11539 0.675876727 238502 1.336215178 238502 1.819593787 238502 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_252640_252970 X 252640 252970 CG3827 sc TSS overlap 1.315621679 252726 2.893371758 252726 4.514934289 252726 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_256460_256999 X 256460 256999 CG3827 sc 3578 1.534537726 256835 1.785782901 256835 3.419354839 256835 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 1 1 1 0 0 X_259299_259575 X 259299 259575 CG3827 sc 6417 0.81402763 259405 2.681075889 259405 3.510155317 259405 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_266022_266824 X 266022 266824 CG3839 l(1)sc TSS overlap 5.081827843 266393 9.427473583 266393 15.00358423 266393 1 0 1 0 0 1 "Romani et al., 1987" 1 0 0 0 0 0 2 1 1 1 1 0 1 0 0 0 0 0 X_270025_270589 X 270025 270589 CG3839 l(1)sc 3480 2.72794899 270415 2.867435159 270415 3.78255675 270135 0 0 0 0 0 1 "Romani et al., 1987" 0 0 0 0 0 0 2 2 2 1 0 0 2 0 0 0 0 0 X_274210_274474 X 274210 274474 CG3839 l(1)sc 7665 1.373007439 274315 1.268011527 274315 2.032258065 274315 0 0 0 0 0 1 "Romani et al., 1987" 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 X_311212_311744 X 311212 311744 CG3258 ase 5578 0.90010627 311300 1.76945245 311300 2.162485066 311300 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_322642_323194 X 322642 323194 CG3972 Cyp4g1 2961 1.716259299 322752 1.646493756 322752 2.053763441 323032 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_375860_376141 X 375860 376141 CG18104 CG4262 arg elav transcript overlap 1.22848034 375992 1.419788665 375992 1.982078853 375992 0 0 0 0 0 0 2 2 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_385686_386246 X 385686 386246 CG4293 CG4293 transcript overlap 1.150903294 386076 5.886647454 386076 9.310633214 386076 0 1 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 X_440581_441651 X 440581 441651 CG6172 vnd 6212 5.154091392 440935 10.40057637 440935 10.22341697 440935 1 0 1 0 1 1 "McDonald et al., 1998; Stathopoulos et al., 2002; Markstein et al., 2004" 4 2 2 1 1 1 2 1 1 1 1 1 3 2 1 1 1 1 X_442754_443577 X 442754 443577 CG6172 vnd 4286 6.407013815 443144 11.10662824 443144 14.16367981 443144 1 0 1 0 1 1 "McDonald et al., 1998; Stathopoulos et al., 2002; Markstein et al., 2004" 0 0 0 0 0 0 2 1 1 1 1 1 1 1 0 0 0 0 X_448941_450341 X 448941 450341 CG6172 vnd transcript overlap 24.05526036 449611 33.99807877 449611 42.15531661 449611 1 0 1 1 0 1 "McDonald et al., 1998; Stathopoulos et al., 2002; Markstein et al., 2004" 2 2 2 2 2 1 2 2 2 2 2 2 5 3 3 3 2 2 X_473913_474715 X 473913 474715 CG13366 CG13366 transcript overlap 2.896918172 474265 3.677233429 474265 5.002389486 474265 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_538286_539090 X 538286 539090 CG5227 sdk 4571 1.295430393 538920 2.957732949 538664 4.302270012 538664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_543640_544822 X 543640 544822 CG5227 sdk TSS overlap 2.017003188 544389 2.497598463 544389 3.428912784 544389 0 0 0 0 0 0 4 3 2 2 1 0 3 2 1 0 0 0 0 0 0 0 0 0 X_575909_576469 X 575909 576469 CG5227 sdk transcript overlap 1.523910733 576299 3.283381364 576019 4.321385902 576019 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_594935_595672 X 594935 595672 CG5227 sdk transcript overlap 1.337938363 595036 2.897214217 595542 3.713261649 595542 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_615800_616356 X 615800 616356 CG5273 CG5273 60 2.80021254 615911 2.439000961 616159 3.531660693 616159 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_619974_620761 X 619974 620761 CG7434 RpL22 transcript overlap 1.912858661 620311 3.709894332 620311 5.597371565 620311 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_653503_653955 X 653503 653955 CG16989 CG16989 3514 2.289054198 653607 2.612872238 653607 3.334528076 653607 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_766510_767325 X 766510 767325 CG11663 CG11663 15207 2.205100956 766620 5.362151777 766620 5.310633214 766620 1 0 1 0 0 0 4 3 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 X_769262_769538 X 769262 769538 CG3711 CG3711 14846 1.531349628 769372 2.921229587 769372 2.891278375 769372 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 X_792038_792612 X 792038 792612 CG11642 CG11642 TSS overlap 2.223311547 792078 2.475780409 792180 2.44516129 792180 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_933010_933290 X 933010 933290 CG3655 CG3655 transcript overlap 1.138344227 933120 1.990312164 933120 2.926451613 933120 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_986682_987219 X 986682 987219 CG14628 CG14628 15280 1.434640523 986787 2.529601722 987062 1.246451613 987062 0 0 0 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_1089360_1090358 X 1089360 1090358 CG3638 CG3638 transcript overlap 5.266884532 1089720 2.953713671 1089440 2.406451613 1089995 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_1093371_1093511 X 1093371 1093511 CG3638 CG3638 TSS overlap 3.217864924 1093411 2.1065662 1093411 1.947096774 1093411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_1167018_1167841 X 1167018 1167841 CG14622 DAAM transcript overlap 1.355119826 1167671 4.586652314 1167396 6.894193548 1167396 0 1 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_1233640_1234197 X 1233640 1234197 CG3051 SNF1A transcript overlap 1.477124183 1234027 2.400430571 1234027 3.156129032 1233747 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_1243955_1244189 X 1243955 1244189 CG32813 CG32813 transcript overlap 0.410675381 1244035 1.71474704 1244035 2.420645161 1244035 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_1249941_1250437 X 1249941 1250437 CG11448 CG11448 transcript overlap 1.221132898 1249995 2.136706136 1249995 2.39483871 1249995 0 0 0 0 0 0 3 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_1333127_1333994 X 1333127 1333994 CG14791 CG14781 Rab27 CG14781 TSS overlap 2.54248366 1333758 8.101184069 1333478 10.71096774 1333618 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_1399251_1399818 X 1399251 1399818 CG14796 CG14796 14510 1.628540305 1399322 3.012917115 1399602 4.294193548 1399602 0 0 0 0 0 0 2 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_1502485_1502876 X 1502485 1502876 CG11491 br transcript overlap 1.734204793 1502725 1.986006459 1502491 2.650322581 1502491 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_1679850_1680621 X 1679850 1680621 CG14799 CG14799 1195 2.389978214 1680451 3.64262648 1680212 5.007741935 1680212 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_1755368_1756347 X 1755368 1756347 CG11579 arm transcript overlap 2.368191721 1755754 3.973089343 1755754 5.2 1755754 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_1797206_1797776 X 1797206 1797776 CG3587 CG3587 814 1.037037037 1797595 2.932185145 1797595 3.721290323 1797315 0 0 0 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 2 1 1 0 0 0 X_1804138_1804651 X 1804138 1804651 CG3587 CG3587 7746 1.276688453 1804241 2.599569429 1804241 2.580645161 1804241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_1865633_1866441 X 1865633 1866441 CG4406 CG4406 134 1.766884532 1865992 3.512378902 1866272 6.816774194 1865992 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 X_1929064_1929896 X 1929064 1929896 CG4061 CG4061 transcript overlap 2.009803922 1929587 3.093649085 1929727 4.398709677 1929727 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_1975673_1975966 X 1975673 1975966 CG3895 ph-d transcript overlap 1.224400871 1975783 1.133476857 1975783 2.569032258 1975783 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_1979539_1980618 X 1979539 1980618 CG3895 ph-d 1659 3.4291939 1979649 7.495156082 1979649 2.876129032 1979649 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_1985330_1985905 X 1985330 1985905 CG18412 ph-p transcript overlap 1.508714597 1985735 1.801937567 1985641 2.198709677 1985735 0 0 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_1992400_1993772 X 1992400 1993772 CG18412 ph-p TSS overlap 3.38453159 1993125 5.658772874 1993411 3.738064516 1992577 1 0 1 0 0 0 3 0 0 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 X_1994632_1995137 X 1994632 1995137 CG18412 ph-p 1931 1.399782135 1994967 4.147470398 1994737 5.458064516 1994737 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2045959_2046257 X 2045959 2046257 CG3457 CG3457 1981 0.726579521 2046040 4.184068891 2046118 3.890322581 2046118 0 0 0 0 0 0 3 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_2114857_2115386 X 2114857 2115386 CG3078 CG3078 transcript overlap 1.697167756 2114946 2.091496233 2114946 3.130322581 2114946 0 0 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2118503_2118822 X 2118503 2118822 CG3073 l(1)G0144 TSS overlap 13.2875817 2118682 2.716899892 2118682 2.24 2118682 0 0 0 0 0 0 1 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 X_2125662_2126448 X 2125662 2126448 CG2924 CG2924 transcript overlap 1.303921569 2125765 3.858988159 2126043 5.243870968 2126043 0 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 1 1 1 0 0 0 0 0 X_2148929_2149099 X 2148929 2149099 CG2865 CG2865 27 1.562091503 2148969 1.384284177 2148969 2.48516129 2148969 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2156466_2157268 X 2156466 2157268 CG2865 CG2865 7564 1.555555556 2157133 2.011840689 2157133 2.614193548 2156856 0 0 0 0 0 0 2 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 X_2162024_2162260 X 2162024 2162260 CG2865 CG2865 13122 1.603485839 2162106 2.711517761 2162106 1.926451613 2162106 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2175882_2176425 X 2175882 2176425 CG34052 CG34052 1995 2.187363834 2175975 3.400430571 2175975 4.576774194 2175975 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 X_2190208_2190991 X 2190208 2190991 CG14049 Ilp6 1913 1.747276688 2190281 2.461786868 2190557 2.60516129 2190557 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2196112_2196656 X 2196112 2196656 CG2845 phl TSS overlap 2.354030501 2196348 3.889128095 2196348 5.561290323 2196348 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2240509_2241046 X 2240509 2241046 CG14045 CG14045 transcript overlap 1.318082789 2240872 2.572658773 2240609 2.832258065 2240872 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_2244314_2244871 X 2244314 2244871 CG14045 CG14045 494 1.708061002 2244422 3.691065662 2244701 5.11483871 2244701 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2255676_2256269 X 2255676 2256269 CG12496 CG12496 10786 4.225490196 2255989 3.858988159 2255989 4.108387097 2255989 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 2 1 0 0 0 X_2264124_2265274 X 2264124 2265274 CG12496 CG12496 1781 6.942265795 2264344 7.433799785 2265104 10.58709677 2265104 1 0 1 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 X_2284769_2285526 X 2284769 2285526 CG7952 gt TSS overlap 3.142701525 2285034 2.488697524 2285034 3.376774194 2285034 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 X_2332068_2332348 X 2332068 2332348 CG33950 trol transcript overlap 0.960784314 2332178 2.006458558 2332178 2.184516129 2332178 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 X_2347403_2347683 X 2347403 2347683 CG33950 trol transcript overlap 0.885620915 2347513 1.917115178 2347513 2.616774194 2347513 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 X_2490612_2491308 X 2490612 2491308 CG2621 sgg transcript overlap 1.782135076 2490720 2.823466093 2490720 3.030967742 2490720 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 X_2540540_2541083 X 2540540 2541083 CG2647 per 653 2.64379085 2540923 3.658772874 2540923 5.48 2540650 1 0 1 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 X_2577744_2578024 X 2577744 2578024 CG2706 fs(1)Yb transcript overlap 1.274509804 2577854 2.456404736 2577854 2.305806452 2577854 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_2585216_2586509 X 2585216 2586509 CG2711 dwg 1360 1.611111111 2585842 3.003229279 2585842 7.397419355 2585842 0 1 1 0 0 0 5 4 1 0 0 0 5 1 1 1 0 0 0 0 0 0 0 0 X_2589522_2590356 X 2589522 2590356 CG2712 CG2712 transcript overlap 1.612200436 2589910 3.460710441 2589910 5.603870968 2589910 0 1 1 0 0 0 2 2 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_2805436_2805702 X 2805436 2805702 CG3603 CG3603 1244 1.513071895 2805532 1.981700753 2805532 2.677419355 2805532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2838831_2839067 X 2838831 2839067 CG4125 rst 8843 2.249455338 2838910 2.460710441 2838910 2.254193548 2838910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2841196_2842271 X 2841196 2842271 CG4125 rst 11208 1.574074074 2841306 3.091496233 2841619 3.250322581 2841619 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2938556_2939108 X 2938556 2939108 CG4116 CG4116 14838 1.347494553 2938666 2.822389666 2938666 2.416774194 2938666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 X_2991176_2991371 X 2991176 2991371 CG3936 N transcript overlap 2.729847495 2991225 2.18729817 2991225 2.107096774 2991225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2992423_2992958 X 2992423 2992958 CG3936 N transcript overlap 2.108932462 2992508 4.083961249 2992508 5.864516129 2992508 1 0 1 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 X_2993969_2994212 X 2993969 2994212 CG3936 N transcript overlap 1.821350763 2994042 3.146393972 2994042 2.947096774 2994042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_2995280_2996295 X 2995280 2996295 CG3936 N transcript overlap 2.005446623 2996115 3.631862217 2996115 5.166451613 2996115 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_3008126_3009129 X 3008126 3009129 CG3936 N transcript overlap 1.635076253 3008737 5.696447793 3008479 6.539354839 3008479 0 1 1 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3012003_3012747 X 3012003 3012747 CG3936 N transcript overlap 2.311546841 3012393 8.172228202 3012393 10.90580645 3012393 1 0 1 0 0 0 10 8 6 6 4 3 7 7 6 3 1 0 0 0 0 0 0 0 X_3018868_3019966 X 3018868 3019966 CG3936 N transcript overlap 16.51633987 3018978 4.347685684 3018978 3.236129032 3019798 0 0 0 0 0 0 3 1 1 1 0 0 3 1 1 1 0 0 1 0 0 0 0 0 X_3020512_3021841 X 3020512 3021841 CG3936 N transcript overlap 1.535947712 3021672 2.127018299 3021164 3.40516129 3020884 0 0 0 0 0 0 6 0 0 0 0 0 8 0 0 0 0 0 1 0 0 0 0 0 X_3159777_3160027 X 3159777 3160027 CG32498 dnc transcript overlap 1.776688453 3159858 4.996770721 3159858 6.607741935 3159858 0 1 1 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_3201256_3201778 X 3201256 3201778 CG10798 dm 27561 2.624183007 3201636 3.215285253 3201365 3.176774194 3201365 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_3204519_3205563 X 3204519 3205563 CG10798 dm 23776 4.452069717 3205150 6.179763186 3205150 7.369032258 3205150 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_3207440_3208164 X 3207440 3208164 CG10798 dm 21175 2.162309368 3207447 2.868675996 3207849 2.531612903 3207849 0 0 0 0 0 0 1 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_3223237_3223780 X 3223237 3223780 CG10798 dm 5559 2.983660131 3223342 3.306781485 3223342 3.745806452 3223342 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_3236246_3237270 X 3236246 3237270 CG10798 dm transcript overlap 1.972766885 3236569 3.604951561 3236569 2.779354839 3237103 0 0 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 X_3239202_3239656 X 3239202 3239656 CG10798 dm transcript overlap 1.892156863 3239291 1.516684607 3239503 2.508387097 3239291 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_3248384_3248611 X 3248384 3248611 CG12535 CG12535 959 0.904139434 3248473 1.584499462 3248473 1.981935484 3248473 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_3249961_3250233 X 3249961 3250233 CG12535 CG12535 391 0.978213508 3250071 1.622174381 3250071 2.326451613 3250071 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3292073_3292591 X 3292073 3292591 CG14269 CG14269 150 0.982570806 3292421 2.083961249 3292157 3.87483871 3292157 0 0 0 0 0 0 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3331055_3331251 X 3331055 3331251 CG12206 CG12206 379 1.156862745 3331081 0.96555436 3331081 2.278709677 3331081 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3414651_3414999 X 3414651 3414999 CG32792 CG32792 9560 1.751633987 3414842 3.810548977 3414842 6.823225806 3414842 0 1 1 0 0 0 3 2 1 1 1 0 3 2 2 2 2 0 0 0 0 0 0 0 X_3540195_3540975 X 3540195 3540975 CG13316 Mnt transcript overlap 1.34204793 3540585 4.127018299 3540585 4.149677419 3540585 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3549869_3550398 X 3549869 3550398 CG2849 Rala 14969 4.8583878 3549979 2.470398278 3549979 3.570322581 3550259 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 X_3564279_3564778 X 3564279 3564778 CG2849 Rala transcript overlap 1.576252723 3564341 2.503767492 3564514 2.870967742 3564650 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_3587478_3587760 X 3587478 3587760 CG12462 CG12462 4638 2.460784314 3587587 2.223896663 3587587 3.007741935 3587587 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3589776_3590308 X 3589776 3590308 CG12462 CG12462 2090 1.449891068 3589882 3.350914962 3589882 4.637419355 3589882 0 0 0 0 0 0 1 1 1 0 0 0 3 2 2 0 0 0 0 0 0 0 0 0 X_3622918_3623675 X 3622918 3623675 CG32782 tlk 1969 2.016339869 3623291 3.483315393 3623505 1.727741935 3623505 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 3 0 0 0 0 0 X_3682980_3683529 X 3682980 3683529 CG2904 ec transcript overlap 2.84204793 3683359 14.7050592 3683359 18.83870968 3683359 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_3686848_3687966 X 3686848 3687966 CG2904 ec transcript overlap 6.223311547 3686958 15.76533907 3686958 18.29677419 3686958 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4 2 2 0 0 0 X_3690307_3693013 X 3690307 3693013 CG2904 ec transcript overlap 3.030501089 3690954 12.03552207 3690954 12.03354839 3690954 1 0 1 0 0 0 2 2 1 0 0 0 5 2 0 0 0 0 3 2 0 0 0 0 X_3700696_3702349 X 3700696 3702349 CG2904 ec transcript overlap 8.431372549 3702183 2.148546825 3701371 3.541935484 3701371 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_3706615_3707672 X 3706615 3707672 CR32777 roX1 transcript overlap 3.506535948 3706725 2.939720129 3707229 2.558709677 3707229 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_3714243_3714796 X 3714243 3714796 CG2913 yin 680 2.375816993 3714630 3.57050592 3714630 4.24 3714630 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2 1 1 0 0 0 X_3752457_3752896 X 3752457 3752896 CG32776 CG32776 56 1.477124183 3752752 2.037674919 3752752 2.842580645 3752752 0 0 0 0 0 0 3 3 2 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 X_3764183_3764463 X 3764183 3764463 CG15240 CG15240 7171 2.87254902 3764293 4.467168999 3764293 6.815483871 3764293 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_3876194_3876767 X 3876194 3876767 CG33220 CG33220 38792 1.019607843 3876267 2.185145318 3876267 2.570322581 3876560 0 0 0 0 0 0 2 2 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_4056093_4056899 X 4056093 4056899 CG3665 Fas2 4766 2.654684096 4056449 7.613562971 4056449 10.07483871 4056449 1 0 1 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 X_4222518_4222798 X 4222518 4222798 CG12688 CG12688 3911 1.238562092 4222628 1.164693219 4222628 2.28 4222628 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_4228688_4229699 X 4228688 4229699 CG12688 CG12688 1979 1.245098039 4229529 2.513455328 4228811 2.940645161 4229311 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_4429628_4429908 X 4429628 4429908 CG12684 CG12684 12510 1.14379085 4429738 1.299246502 4429738 1.121290323 4429738 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_4466128_4466375 X 4466128 4466375 CG12212 peb transcript overlap 0.395424837 4466234 1.091496233 4466234 1.976774194 4466234 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_4492808_4493062 X 4492808 4493062 CG7038 mRpL30 52 2.251633987 4492950 2.621097955 4492950 3.338064516 4492950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_4784787_4786285 X 4784787 4786285 CG6899 Ptp4E transcript overlap 1.761437908 4785139 4.01722282 4785416 5.07483871 4785691 0 1 1 0 0 0 5 2 0 0 0 0 7 5 0 0 0 0 3 0 0 0 0 0 X_4791641_4792199 X 4791641 4792199 CG6899 Ptp4E transcript overlap 3.458605664 4792029 3.639397201 4792029 3.701935484 4791749 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_4813667_4813936 X 4813667 4813936 CG15468 SIP3 7430 0.815904139 4813769 1.456404736 4813769 2.263225806 4813769 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 X_4814439_4816043 X 4814439 4816043 CG15468 SIP3 8202 1.459694989 4815304 2.304628633 4815583 3.576774194 4815863 0 0 0 0 0 0 7 4 2 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_4878200_4878725 X 4878200 4878725 CG6824 ovo 14809 2.159041394 4878590 36.58449946 4878590 41.16258065 4878590 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_4889841_4890111 X 4889841 4890111 CG6824 ovo 3423 1.48583878 4889951 1.314316469 4889951 2.047741935 4889951 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_4891672_4893745 X 4891672 4893745 CG6824 ovo TSS overlap 2.88671024 4892315 16.23573735 4892315 18.19225806 4892315 1 0 1 0 0 0 8 8 5 0 0 0 6 4 4 1 0 0 2 0 0 0 0 0 X_4894342_4894910 X 4894342 4894910 CG6824 ovo transcript overlap 0.887799564 4894451 4.688912809 4894731 5.574193548 4894731 0 1 1 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_4897677_4898312 X 4897677 4898312 CG6824 ovo transcript overlap 1.652505447 4898032 3.229278794 4898032 3.878709677 4898032 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_5177601_5178037 X 5177601 5178037 CG4209 CanB TSS overlap 2.363834423 5177708 2.673842842 5177937 3.705806452 5177937 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_5253073_5253608 X 5253073 5253608 CG3252 CG3252 transcript overlap 2.039215686 5253438 2.593110872 5253438 2.726451613 5253438 0 0 0 0 0 0 1 0 0 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 X_5362359_5362859 X 5362359 5362859 CG12730 CG12730 TSS overlap 1.216775599 5362428 3.093649085 5362701 3.369032258 5362701 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_5375852_5376396 X 5375852 5376396 CG33980 CG33980 transcript overlap 1.270152505 5375947 2.940796555 5376227 2.312258065 5376227 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_5386344_5387141 X 5386344 5387141 CG33980 CG33980 transcript overlap 1.953159041 5386700 4.878363832 5386700 4.882580645 5386700 0 0 0 0 0 0 2 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 X_5396530_5396809 X 5396530 5396809 CG33980 CG33980 transcript overlap 1.027233115 5396640 2.745963402 5396640 1.878709677 5396640 0 0 0 0 0 0 1 1 1 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 X_5405766_5406307 X 5405766 5406307 CG33980 CG33980 346 6.300653595 5405865 3.624327234 5405865 3.340645161 5405865 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_5526625_5527184 X 5526625 5527184 CG15779 Tre transcript overlap 0.946623094 5526735 1.790096878 5527015 2.547096774 5527015 0 0 0 0 0 0 3 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_5553881_5554420 X 5553881 5554420 CG33080 CG33080 transcript overlap 0.918300654 5554250 2.508073197 5553970 3.578064516 5553970 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_5589511_5590138 X 5589511 5590138 CG3125 l(1)G0060 transcript overlap 3.035947712 5589972 2.741657696 5589711 3.544516129 5589711 0 0 0 0 0 0 3 2 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 X_5616185_5617002 X 5616185 5617002 CG3097 CG3097 170 1.727668845 5616573 3.57911733 5616573 4.096774194 5616573 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 X_5725256_5726009 X 5725256 5726009 CG16721 CG16721 transcript overlap 1.076252723 5725576 3.809472551 5725855 5.651612903 5725855 0 1 1 0 0 0 2 1 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 X_5744603_5745163 X 5744603 5745163 CG4027 Act5C 937 2.339869281 5744713 2.674919268 5744993 2.295483871 5744993 0 0 0 0 0 0 2 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 X_5747130_5747457 X 5747130 5747457 CG4027 Act5C transcript overlap 1.830065359 5747170 1.769644779 5747170 2.286451613 5747170 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_5795741_5796019 X 5795741 5796019 CG32755 CG32755 transcript overlap 1.154684096 5795851 2.778256189 5795851 2.042580645 5795851 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_5925846_5926566 X 5925846 5926566 CG4660 CG4660 transcript overlap 2.77124183 5926225 1.923573735 5926483 3.374193548 5926225 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_5936253_5936882 X 5936253 5936882 CG4317 Mipp2 TSS overlap 2.164488017 5936643 4.482238967 5936643 3.496774194 5936643 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_5954885_5955161 X 5954885 5955161 CG15899 Ca-alpha1T transcript overlap 1.01416122 5954992 2.192680301 5954992 2.36 5954992 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_6197580_6198104 X 6197580 6198104 CG3861 l(1)G0030 transcript overlap 2.272331155 6197612 3.419806243 6197970 4.553548387 6197769 0 0 0 0 0 0 1 1 1 1 1 0 2 1 1 1 1 0 0 0 0 0 0 0 X_6386417_6386697 X 6386417 6386697 CG3950 CG3950 transcript overlap 1.394335512 6386527 6.79547901 6386527 6.513548387 6386527 0 1 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_6446869_6447378 X 6446869 6447378 CG3973 CG3973 transcript overlap 1.583877996 6446957 2.998923574 6446957 1.87483871 6447208 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 X_6449287_6449564 X 6449287 6449564 CG3973 CG3973 transcript overlap 1.606753813 6449397 2.667384284 6449397 2.570322581 6449397 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_6609782_6610041 X 6609782 6610041 CG14438 CG14438 transcript overlap 0.852941176 6609871 1.92787944 6609871 2.141935484 6609871 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_6622847_6623396 X 6622847 6623396 CG3135 shf transcript overlap 1.677559913 6622955 2.353067815 6623234 2.335483871 6623234 0 0 0 0 0 0 1 1 1 0 0 0 4 1 1 0 0 0 0 0 0 0 0 0 X_6649406_6649980 X 6649406 6649980 CG4532 pod1 transcript overlap 1.183006536 6649511 5.457481163 6649790 6.958709677 6649790 0 1 1 0 0 0 1 0 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 X_6667484_6668837 X 6667484 6668837 CG4547 CG4547 TSS overlap 2.417211329 6668154 7.033369214 6668154 10.02709677 6668154 1 0 1 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_6704541_6704823 X 6704541 6704823 CG14434 CG14434 6682 0.67211329 6704651 2.83853606 6704651 4.732903226 6704651 0 0 0 0 0 0 1 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_6722976_6723765 X 6722976 6723765 CG33692 CG33691 CG33692 CG33691 transcript overlap 3.296296296 6723596 3.65123789 6723596 5.602580645 6723596 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_6830709_6831199 X 6830709 6831199 CG14430 CG14430 527 6.910675381 6831035 2.454251884 6830819 2.798709677 6830819 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_6833639_6834398 X 6833639 6834398 CG14430 CG14430 1913 3.371459695 6833990 5.069967707 6833990 2.580645161 6833990 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_6842383_6843419 X 6842383 6843419 CG2977 inx7 transcript overlap 2.479302832 6843280 7.664155005 6842755 9.503225806 6842755 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_6843668_6844493 X 6843668 6844493 CG2977 inx7 transcript overlap 3.404139434 6844044 2.218514532 6843911 3.147096774 6843911 0 0 0 0 0 0 3 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_6879905_6880394 X 6879905 6880394 CG12541 CG12541 1090 1.521786492 6880015 2.65123789 6880224 3.736774194 6880224 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 X_6881874_6882971 X 6881874 6882971 CG14427 CG14427 2873 8.139433551 6882263 9.864370291 6882263 14.40129032 6882263 1 0 1 0 0 0 6 5 2 1 0 0 4 4 3 2 0 0 0 0 0 0 0 0 X_6884332_6887229 X 6884332 6887229 CG14427 CG14427 TSS overlap 2.928104575 6886109 4.777179763 6885659 5.482580645 6885821 1 0 1 0 0 0 4 2 2 2 1 0 3 1 0 0 0 0 2 1 1 1 0 0 X_6904247_6904806 X 6904247 6904806 CG14426 nullo 9590 1.106753813 6904637 1.930032293 6904637 4.212903226 6904357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_6941115_6941878 X 6941115 6941878 CG18350 CG14425 Sxl CG14425 transcript overlap 2.674291939 6941493 4.434876211 6941493 5.356129032 6941493 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 X_6947085_6947226 X 6947085 6947226 CG4615 CG4615 transcript overlap 1.183006536 6947089 2.08073197 6947089 2.899354839 6947089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_6962936_6963222 X 6962936 6963222 CG4626 fz4 7408 1.631808279 6963046 3.051668461 6963046 1.763870968 6963046 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_7014211_7015554 X 7014211 7015554 CR32730 CR32730 19125 2.367102397 7014600 12.29817008 7014600 12.55612903 7014600 1 0 1 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_7034860_7035224 X 7034860 7035224 CG9650 CG9650 3088 1.664488017 7035054 3.524219591 7034937 1.250322581 7035054 0 0 0 0 0 0 1 1 1 1 0 0 2 2 2 2 2 0 0 0 0 0 0 0 X_7059149_7059920 X 7059149 7059920 CG9650 CG9650 transcript overlap 1.944444444 7059234 3.371367061 7059234 3.811612903 7059234 0 0 0 0 0 0 2 2 2 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 X_7066269_7066829 X 7066269 7066829 CG9650 CG9650 transcript overlap 1.260348584 7066659 3.121636168 7066659 2.76 7066379 0 0 0 0 0 0 0 0 0 0 0 0 4 2 1 0 0 0 0 0 0 0 0 0 X_7075855_7076151 X 7075855 7076151 CG9650 CG9650 transcript overlap 1.34422658 7075940 2.001076426 7075940 2.31483871 7075940 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_7081590_7082087 X 7081590 7082087 CG9650 CG9650 transcript overlap 1.640522876 7081948 3.269106566 7081703 2.558709677 7081703 0 0 0 0 0 0 3 3 3 1 1 0 5 5 5 4 2 1 0 0 0 0 0 0 X_7119317_7119816 X 7119317 7119816 CG1958 CG1958 7177 1.068627451 7119427 2.580193757 7119664 2.353548387 7119664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_7141851_7142904 X 7141851 7142904 CG9653 brk 5311 8.096949891 7142559 17.15931109 7142559 22.45677419 7142559 1 0 1 1 0 1 "Jazwinska et al., 1999; Markstein et al., 2004" 2 2 2 1 0 0 3 3 2 2 0 0 4 3 3 3 0 0 X_7145032_7145311 X 7145032 7145311 CG9653 brk 7866 1.145969499 7145142 1.649085038 7145142 2.750967742 7145142 0 0 0 0 0 1 "Jazwinska et al., 1999; Markstein et al., 2004" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_7151438_7151586 X 7151438 7151586 CG9653 brk 1591 1.628540305 7151441 1.869752422 7151441 2.357419355 7151441 0 0 0 0 0 1 "Jazwinska et al., 1999; Markstein et al., 2004" 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_7152768_7153593 X 7152768 7153593 CG9653 brk TSS overlap 2.281045752 7152873 3.469321851 7152873 3.60516129 7152873 0 0 0 0 0 1 "Jazwinska et al., 1999; Markstein et al., 2004" 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_7165446_7167592 X 7165446 7167592 CG1643 Atg5 transcript overlap 17.59912854 7165832 45.19375673 7166112 55.50064516 7166112 1 0 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 6 3 2 0 0 0 X_7169701_7170261 X 7169701 7170261 CG2079 l(1)G0331 transcript overlap 2.227668845 7169812 3.258342304 7169812 4.468387097 7169812 0 0 0 0 0 0 1 1 1 1 0 0 3 2 1 1 0 0 1 0 0 0 0 0 X_7280813_7281340 X 7280813 7281340 CG32726 CG32726 9834 1.364923747 7281199 1.744886975 7280921 2.620645161 7280921 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_7387679_7388238 X 7387679 7388238 CG32720 CG32720 5554 1.154684096 7387789 2.363832078 7388069 3.556129032 7388069 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_7401659_7402169 X 7401659 7402169 CG11369 CG11369 17665 1.091503268 7401762 3.001076426 7402015 4.069677419 7402015 0 0 0 0 0 0 2 2 2 2 2 2 2 2 2 2 2 2 1 0 0 0 0 0 X_7425032_7425289 X 7425032 7425289 CG11369 CG11369 5198 0.450980392 7425123 1.158234661 7425123 2.241290323 7425123 0 0 0 0 0 0 1 1 1 1 1 0 3 3 3 1 1 0 0 0 0 0 0 0 X_7535873_7536115 X 7535873 7536115 CG12690 CHES-1-like transcript overlap 1.37037037 7535945 2.777179763 7535945 3.91483871 7535945 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_7550304_7551054 X 7550304 7551054 CG12690 CHES-1-like 8374 1.185185185 7550660 2.61679225 7550660 1.443870968 7550896 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 0 0 0 0 0 0 0 0 0 X_7733892_7734263 X 7733892 7734263 CG10932 CG10932 TSS overlap 2.160130719 7733933 2.363832078 7734054 2.818064516 7733933 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_7736394_7738064 X 7736394 7738064 CG17256 Nek2 TSS overlap 9.555555556 7737113 4.721205597 7737113 5.952258065 7737391 1 0 1 0 0 0 3 2 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 X_7781115_7781391 X 7781115 7781391 CG1530 CG1530 814 3.823529412 7781225 2.767491927 7781225 3.042580645 7781225 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_7782758_7783591 X 7782758 7783591 CG1530 CG1530 transcript overlap 1.401960784 7782868 4.375672766 7783148 6.223225806 7783148 0 1 1 0 0 0 0 0 0 0 0 0 3 3 1 1 1 0 1 0 0 0 0 0 X_7792207_7792380 X 7792207 7792380 CG2206 l(1)G0193 TSS overlap 1.447712418 7792246 2.524219591 7792246 3.495483871 7792246 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_7804180_7804508 X 7804180 7804508 CG2212 sws transcript overlap 1.789760349 7804394 2.341227126 7804278 2.569032258 7804278 0 0 0 0 0 0 2 2 2 1 0 0 2 2 2 2 2 0 0 0 0 0 0 0 X_7810468_7811027 X 7810468 7811027 CG2212 CG32858 sws sn transcript overlap 1.664488017 7810860 3.735199139 7810860 3.379354839 7810860 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 X_8026941_8027522 X 8026941 8027522 CG32717 sdt transcript overlap 0.88671024 8027373 2.694294941 8027058 1.051612903 8027058 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_8027687_8027832 X 8027687 8027832 CG32717 sdt transcript overlap 0.925925926 8027704 1.149623251 8027704 0.990967742 8027704 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_8056279_8056561 X 8056279 8056561 CG32717 sdt transcript overlap 2.910675381 8056391 5.864370291 8056391 5.28516129 8056391 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 1 1 0 X_8059091_8062037 X 8059091 8062037 CG32717 sdt transcript overlap 2.122004357 8061368 7.165769645 8059506 10.53290323 8059506 1 0 1 0 0 0 2 0 0 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 X_8065013_8066065 X 8065013 8066065 CG32717 sdt transcript overlap 1.868191721 8065671 5.381054898 8065671 6.358709677 8065671 0 1 1 0 0 0 4 3 1 0 0 0 4 4 3 2 0 0 1 0 0 0 0 0 X_8253688_8253961 X 8253688 8253961 CG32711 CG32711 transcript overlap 0.933551198 8253798 2.256189451 8253798 2.629677419 8253798 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_8257946_8258224 X 8257946 8258224 CG32711 CG32711 2615 1.589324619 8258054 3.432723358 8258054 3.931612903 8258054 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_8282749_8283242 X 8282749 8283242 CG1440 CG1440 transcript overlap 2.687363834 8283072 3.842841765 8283072 3.681290323 8283072 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_8346960_8347506 X 8346960 8347506 CG32714 CG32714 transcript overlap 1.288671024 8347371 2.233584499 8347264 4.225806452 8347264 0 0 0 0 0 0 2 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_8378680_8379400 X 8378680 8379400 CG1634 Nrg transcript overlap 2.10130719 8379237 3.940796555 8379237 5.521290323 8379237 1 0 1 0 0 0 2 1 0 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 X_8406705_8407526 X 8406705 8407526 CG11265 CG11265 transcript overlap 2.15577342 8407094 5.6598493 8407094 6.089032258 8407094 1 0 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 X_8496029_8496299 X 8496029 8496299 CG12154 oc 143 3.782135076 8496135 3.190527449 8496135 2.76516129 8496135 0 0 0 0 0 0 "Gao and Finkelstein, 1998" 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_8498803_8500756 X 8498803 8500756 CG12154 oc 2917 1.956427015 8499791 5.803013994 8500045 7.172903226 8500045 0 1 1 0 0 0 "Gao and Finkelstein, 1998" 0 0 0 0 0 0 2 1 0 0 0 0 4 2 0 0 0 0 X_8534953_8535160 X 8534953 8535160 CG12108 Ppt1 transcript overlap 1.850762527 8535062 2.173304629 8535062 2.993548387 8535062 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_8555226_8555508 X 8555226 8555508 CG1787 Hexo2 transcript overlap 2.515250545 8555336 2.406889128 8555336 3.490322581 8555336 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_8559488_8560188 X 8559488 8560188 CG2004 CG1785 CG2004 CG1785 TSS overlap 5.630718954 8559869 3.827771798 8559869 5.232258065 8559731 1 0 1 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 X_8582522_8582797 X 8582522 8582797 CG1789 CG1789 16729 1.754901961 8582627 1.856835307 8582627 3.162580645 8582627 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_8611441_8611946 X 8611441 8611946 CG11354 Lim1 transcript overlap 1.752723312 8611551 3.110871905 8611551 2.990967742 8611551 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 X_8675990_8677030 X 8675990 8677030 CG32710 CG32710 11532 2.190631808 8676366 4.128094726 8676366 5.065806452 8676366 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_8687488_8688001 X 8687488 8688001 CG12075 CG12075 21348 1.131808279 8687833 2.782561895 8687833 3.161290323 8687833 0 0 0 0 0 0 2 2 0 0 0 0 3 3 0 0 0 0 2 0 0 0 0 0 X_8732066_8732332 X 8732066 8732332 CG10701 Moe transcript overlap 0.745098039 8732176 2.993541442 8732176 3.929032258 8732176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_8736655_8737101 X 8736655 8737101 CG10701 Moe transcript overlap 2.17211329 8736768 2.060279871 8736768 3.301935484 8736768 0 0 0 0 0 0 2 2 0 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 X_8770080_8770616 X 8770080 8770616 CG10966 rdgA TSS overlap 1.82788671 8770240 2.938643703 8770240 5.618064516 8770240 0 1 1 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 X_8886781_8888133 X 8886781 8888133 CG10962 CG10962 transcript overlap 2.60130719 8887712 23.73519914 8887712 34.33806452 8887712 1 0 1 0 0 0 4 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_8972551_8973390 X 8972551 8973390 CG12664 ld14 transcript overlap 1.749455338 8972940 5.010764263 8972940 6.732903226 8972940 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_8974223_8975336 X 8974223 8975336 CG12664 ld14 transcript overlap 4.969498911 8974868 10.8729817 8974868 10.71096774 8974868 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 X_8986210_8986982 X 8986210 8986982 CG7065 CG7065 791 4.343137255 8986563 3.574811625 8986563 4.552258065 8986563 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 X_9037656_9038765 X 9037656 9038765 CG12056 CG12056 TSS overlap 1.45751634 9037921 3.37459634 9037921 5.892903226 9038060 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_9139370_9139861 X 9139370 9139861 CG1689 lz transcript overlap 1.058823529 9139479 2.986006459 9139479 4.672258065 9139479 0 0 0 0 0 0 1 1 0 0 0 0 3 2 2 1 0 0 1 0 0 0 0 0 X_9147694_9148110 X 9147694 9148110 CG1689 lz transcript overlap 1.408496732 9147870 2.280947255 9147870 2.590967742 9147870 0 0 0 0 0 0 5 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_9340779_9342864 X 9340779 9342864 CG15316 CG15316 transcript overlap 1.617647059 9342734 7.696447793 9342468 8.731612903 9342468 0 1 1 0 0 0 3 2 1 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 X_9503363_9504029 X 9503363 9504029 CG32697 l(1)G0232 transcript overlap 1.778867102 9503667 2.911733046 9503667 2.538064516 9503667 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_9519705_9520817 X 9519705 9520817 CG15319 nej transcript overlap 1.786492375 9520095 8.520990312 9520309 9.547096774 9520309 0 1 1 0 0 0 3 3 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_9534555_9534800 X 9534555 9534800 CG12653 btd 4609 1.116557734 9534664 2.46393972 9534664 2.31483871 9534664 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_9539104_9539281 X 9539104 9539281 CG12653 btd 128 3.425925926 9539190 3.037674919 9539190 2.687741935 9539190 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_9539977_9540342 X 9539977 9540342 CG12653 btd transcript overlap 1.397603486 9540186 1.526372443 9540186 2.489032258 9540186 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_9576765_9577008 X 9576765 9577008 CG1343 Sp1 21172 1.388888889 9576870 0.937567277 9576870 2.550967742 9576870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_9594834_9595330 X 9594834 9595330 CG1343 Sp1 2850 1.474945534 9594915 2.654467169 9595161 3.710967742 9595161 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_9599656_9600261 X 9599656 9600261 CG1343 Sp1 transcript overlap 1.466230937 9600046 3.580193757 9600046 4.299354839 9600046 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 X_9853785_9854416 X 9853785 9854416 CG33557 CG33557 40 3.261437908 9853889 3.480086114 9854169 3.710967742 9854169 0 0 0 0 0 0 0 0 0 0 0 0 4 4 1 1 1 0 2 0 0 0 0 0 X_9931851_9932242 X 9931851 9932242 CG12094 CG12094 transcript overlap 2.673202614 9931907 2.066738428 9932098 3.148387097 9931907 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_9933054_9933768 X 9933054 9933768 CG12094 CG12094 transcript overlap 2.053376906 9933629 4.839612487 9933429 6.260645161 9933429 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10057245_10057560 X 10057245 10057560 CG15309 CG15309 transcript overlap 1.708061002 10057325 2.480086114 10057325 1.783225806 10057484 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10189817_10190343 X 10189817 10190343 CG12641 CG12641 1999 1.194989107 10190199 2.121636168 10189919 2.403870968 10189919 0 0 0 0 0 0 2 0 0 0 0 0 3 1 1 1 1 0 0 0 0 0 0 0 X_10193527_10193828 X 10193527 10193828 CR33662 snoRNA:U3:9B 136 2.765795207 10193535 2.05489774 10193535 3.331612903 10193535 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10273563_10273833 X 10273563 10273833 CG32683 CG32683 transcript overlap 0.704793028 10273663 2.314316469 10273663 2.144516129 10273663 0 0 0 0 0 0 4 3 2 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_10323268_10324164 X 10323268 10324164 CG2887 CG2890 CG2887 PPP4R2r TSS overlap 2 10323925 3.124865447 10323656 3.438709677 10323656 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10337998_10338259 X 10337998 10338259 CG32680 CG33175 CG32680 spri transcript overlap 1.135076253 10338108 1.102260495 10338108 2.446451613 10338108 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 X_10338981_10339618 X 10338981 10339618 CG33175 spri transcript overlap 3.011982571 10339161 4.411194833 10339021 5.830967742 10339021 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 X_10346922_10347385 X 10346922 10347385 CG33175 spri transcript overlap 1.04248366 10347215 2.453175457 10347013 3.483870968 10347013 0 0 0 0 0 0 4 3 3 0 0 0 4 3 2 0 0 0 0 0 0 0 0 0 X_10360554_10361344 X 10360554 10361344 CG33175 spri transcript overlap 2.464052288 10360664 3.441334769 10360902 3.683870968 10360664 0 0 0 0 0 0 0 0 0 0 0 0 3 2 2 0 0 0 1 0 0 0 0 0 X_10404668_10404944 X 10404668 10404944 CG33175 spri transcript overlap 1.555555556 10404777 2.110871905 10404777 2.743225806 10404777 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10463473_10463613 X 10463473 10463613 CG15295 CG15295 transcript overlap 1.308278867 10463584 2.334768568 10463584 2.465806452 10463584 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_10521763_10522040 X 10521763 10522040 CG12637 CG12637 3177 1.921568627 10521870 1.771797632 10521870 2.415483871 10521870 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_10576841_10577100 X 10576841 10577100 CG32676 CG32676 transcript overlap 1.660130719 10576951 2.791173305 10576951 3.238709677 10576951 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_10588858_10589647 X 10588858 10589647 CG32676 CG32676 transcript overlap 2.318082789 10589527 3.031216362 10589176 3.327741935 10589176 0 0 0 0 0 0 1 1 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 X_10609240_10609436 X 10609240 10609436 CG32675 CG32675 transcript overlap 2.645969499 10609350 2.444564047 10609350 2.606451613 10609350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_10612621_10612869 X 10612621 10612869 CG32672 Atg8a transcript overlap 2.812636166 10612728 1.770721206 10612728 2.939354839 10612728 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_10630124_10630612 X 10630124 10630612 CG1683 CG16944 Ant2 sesB transcript overlap 8.976034858 10630469 2.300322928 10630234 2.687741935 10630234 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_10647062_10647595 X 10647062 10647595 CG1691 Imp transcript overlap 2.117647059 10647156 7.96555436 10647435 10.3883871 10647435 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_10653527_10654757 X 10653527 10654757 CG1691 Imp transcript overlap 2.279956427 10653862 3.369214209 10654587 4.473548387 10654587 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 X_10668095_10668870 X 10668095 10668870 CG1691 Imp 95 2.594771242 10668700 2.648008611 10668700 3.161290323 10668420 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_10750801_10751391 X 10750801 10751391 CG15207 CG15207 TSS overlap 1.467320261 10750876 2.761033369 10751156 4.098064516 10751156 0 0 0 0 0 0 2 2 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_10775905_10776354 X 10775905 10776354 CG2145 CG2145 3288 1.407407407 10776018 2.692142088 10776018 3.44 10776018 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_10885250_10885518 X 10885250 10885518 CG12626 CG12626 2317 2.077342048 10885360 2.373519914 10885360 2.592258065 10885360 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_10931277_10931503 X 10931277 10931503 CG18085 sev transcript overlap 1.086056645 10931387 2.095801938 10931387 3.112258065 10931387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_10981899_10982097 X 10981899 10982097 CG1453 Klp10A transcript overlap 1.786492375 10981930 1.897739505 10981930 1.087741935 10981930 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_10985084_10985346 X 10985084 10985346 CG32667 CG32667 transcript overlap 1.205882353 10985194 2.122712594 10985194 3.372903226 10985194 0 0 0 0 0 0 3 1 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_10991751_10992246 X 10991751 10992246 CG1404 ran transcript overlap 1.623093682 10992080 3.074273412 10992080 4 10992080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_10999138_10999602 X 10999138 10999602 CG1938 Dlic2 17 2.782135076 10999248 3.167922497 10999248 3.12516129 10999517 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_11167469_11168367 X 11167469 11168367 CG1641 sisA TSS overlap 2.934640523 11168208 6.613562971 11168208 7.421935484 11167928 1 0 1 0 0 0 2 1 1 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 X_11184289_11185299 X 11184289 11185299 CG11759 Kap3 TSS overlap 12.06971678 11184909 6.275565124 11184909 9.494193548 11184909 1 0 1 0 0 0 3 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_11215843_11216146 X 11215843 11216146 CG1725 dlg1 transcript overlap 1.482570806 11216012 2.666307858 11216012 3.278709677 11216012 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_11257681_11257932 X 11257681 11257932 CG12622 Gr10b transcript overlap 1.522875817 11257762 2.234660926 11257762 3.189677419 11257762 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_11340079_11340639 X 11340079 11340639 CG32666 CG32666 transcript overlap 3.27124183 11340469 4.693218515 11340469 3.335483871 11340469 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_11459516_11459812 X 11459516 11459812 CG1817 Ptp10D TSS overlap 1.346405229 11459626 2.05489774 11459626 2.963870968 11459626 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_11532767_11533729 X 11532767 11533729 CG1830 PhKgamma TSS overlap 2.58360302 11532807 5.479690522 11533233 8.684137931 11533233 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_11677785_11679988 X 11677785 11679988 CG15740 CG15740 transcript overlap 1.870550162 11678420 78.2205029 11678420 75.55034483 11678420 0 1 1 0 0 0 17 11 4 1 0 0 9 7 2 0 0 0 0 0 0 0 0 0 X_11686248_11686556 X 11686248 11686556 CG1967 CG1967 TSS overlap 3.228694714 11686358 2.777562863 11686358 5.231724138 11686358 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_11690417_11690682 X 11690417 11690682 CG1886 ATP7 transcript overlap 1.243797195 11690527 2.040618956 11690527 3.027586207 11690527 0 0 0 0 0 0 4 2 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_11727691_11728004 X 11727691 11728004 CG15737 CG15737 TSS overlap 1.507011866 11727871 2.213733075 11727871 3.779310345 11727871 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_11770408_11770967 X 11770408 11770967 CG1522 cac transcript overlap 0.942826321 11770518 2.421663443 11770798 3.335172414 11770798 0 0 0 0 0 0 3 3 3 2 0 0 2 2 1 0 0 0 0 0 0 0 0 0 X_11841101_11841239 X 11841101 11841239 CG1806 CG1806 TSS overlap 1.98381877 11841108 1.615087041 11841108 2.11862069 11841108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_11969590_11970092 X 11969590 11970092 CG2750 CG2750 28453 1.908306365 11969700 2.362669246 11969700 3.187586207 11969700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12040181_12041502 X 12040181 12041502 CG12720 CG12720 10473 2.243797195 12040254 4.926499033 12040534 6.449655172 12041337 1 0 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 X_12064532_12064802 X 12064532 12064802 CG32659 Ten-a transcript overlap 0.928802589 12064632 1.943907157 12064632 1.542068966 12064632 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12072342_12072622 X 12072342 12072622 CG32659 Ten-a transcript overlap 1.774541532 12072452 1.99032882 12072452 2.857931034 12072452 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_12229082_12229240 X 12229082 12229240 CG32651 CG32651 13102 1.574973031 12229093 1.902321083 12229093 3.216551724 12229093 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12310265_12310855 X 12310265 12310855 CG15926 CG15926 transcript overlap 1.331175836 12310646 1.96615087 12310371 2.969655172 12310371 0 0 0 0 0 0 2 2 2 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_12413602_12413768 X 12413602 12413768 CG11138 CG11138 transcript overlap 1.088457389 12413671 1.378143133 12413671 2.165517241 12413671 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_12425271_12425879 X 12425271 12425879 CG1848 LIMK1 transcript overlap 1.77562028 12425374 2.732108317 12425722 4.497931034 12425722 0 0 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_12436057_12436614 X 12436057 12436614 CG32654 CG32654 transcript overlap 1.262135922 12436444 2.395551257 12436167 3.467586207 12436167 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_12488043_12488909 X 12488043 12488909 CG2028 CkIalpha transcript overlap 1.989212513 12488146 5.456479691 12488447 8.783448276 12488447 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 X_12493985_12494548 X 12493985 12494548 CR33963 CG4070 CR33963 Tis11 transcript overlap 2.070118662 12494227 2.823984526 12494227 2.946206897 12494227 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_12497277_12498687 X 12497277 12498687 CG4070 Tis11 transcript overlap 8.323624595 12498239 4.13926499 12498239 5.148965517 12498239 1 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_12500143_12500661 X 12500143 12500661 CG4070 Tis11 transcript overlap 2.45631068 12500278 5.424564797 12500278 3.242758621 12500278 1 0 1 0 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_12501444_12501691 X 12501444 12501691 CG4070 Tis11 transcript overlap 2.247033441 12501542 3.66827853 12501542 6.700689655 12501542 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12508065_12508345 X 12508065 12508345 CG4070 Tis11 transcript overlap 1.533980583 12508175 2.020309478 12508175 2.899310345 12508175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12554925_12555460 X 12554925 12555460 CG4013 Smr transcript overlap 1.35167206 12555298 2.047388781 12555298 3.107586207 12555298 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 X_12561505_12562076 X 12561505 12562076 CG4013 Smr transcript overlap 1.787486516 12561945 2.259187621 12561945 2.434482759 12561847 0 0 0 0 0 0 1 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 X_12568992_12570297 X 12568992 12570297 CG4013 Smr transcript overlap 2.126213592 12569363 5.800773694 12569851 8.52137931 12569851 1 0 1 0 0 0 5 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 X_12578340_12578548 X 12578340 12578548 CG4004 CG4004 TSS overlap 1.198489752 12578378 1.727272727 12578378 1.157241379 12578378 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12584172_12584686 X 12584172 12584686 CG4004 CG4004 5769 1.608414239 12584299 2.018375242 12584524 2.306206897 12584299 0 0 0 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_12585298_12586369 X 12585298 12586369 CG4004 CG4004 6895 1.723840345 12585947 3.216634429 12586214 3.092413793 12585404 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_12603757_12604297 X 12603757 12604297 CG3812 CG3812 transcript overlap 1.562028047 12603867 1.650870406 12603867 2.408275862 12603867 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 X_12698471_12699002 X 12698471 12699002 CG4661 CG4661 6812 1.213592233 12698860 1.457446809 12698581 3.216551724 12698581 0 0 0 0 0 0 3 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 X_12739361_12739650 X 12739361 12739650 CG4404 CG4404 transcript overlap 2.67206041 12739481 1.328820116 12739481 1.32137931 12739481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12759829_12760450 X 12759829 12760450 CR32646 CR32646 12022 1.696871629 12760143 3.684719536 12760143 6.154482759 12760143 0 1 1 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12774019_12774737 X 12774019 12774737 CR32646 CR32646 transcript overlap 1.84789644 12774357 3.473887814 12774357 4.805517241 12774357 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_12922635_12923030 X 12922635 12923030 CG4353 hep transcript overlap 0.754045307 12922860 2.143133462 12922860 2.830344828 12922860 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_12946029_12946234 X 12946029 12946234 CG12714 CG12714 transcript overlap 1.781014024 12946166 1.756286267 12946166 2.743448276 12946166 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_12948646_12948840 X 12948646 12948840 CG4346 rad 234 0.466019417 12948754 1.963249516 12948754 2.106206897 12948754 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_12962059_12962776 X 12962059 12962776 CR33657 CG32638 snmRNA:204 CG32638 TSS overlap 1.296655879 12962417 2.354932302 12962417 2.937931034 12962417 0 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 X_13044635_13044883 X 13044635 13044883 CG1903 sno transcript overlap 1.667745415 13044713 2.098646035 13044713 1 13044713 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_13061251_13062333 X 13061251 13062333 CG1771 mew transcript overlap 1.915857605 13061681 5.344294004 13061681 8.910344828 13061681 0 1 1 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_13063707_13064520 X 13063707 13064520 CG1771 mew transcript overlap 1.694714132 13064072 8.138297872 13064072 14.60551724 13064072 0 1 1 0 0 0 2 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_13067818_13068566 X 13067818 13068566 CG1771 mew transcript overlap 2.199568501 13068123 5.656673114 13068123 8.608275862 13068123 1 0 1 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 X_13118619_13119065 X 13118619 13119065 CG1770 HDAC4 transcript overlap 1.512405609 13118650 1.943907157 13118650 2.951724138 13118860 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 X_13202311_13202846 X 13202311 13202846 CG15749 dmrt11E transcript overlap 1.433656958 13202698 2.321083172 13202420 3.972413793 13202420 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_13203375_13203844 X 13203375 13203844 CG15749 dmrt11E transcript overlap 2.803667745 13203483 3.389748549 13203690 3.260689655 13203690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 1 1 0 0 X_13220420_13220980 X 13220420 13220980 CG1989 Yippee transcript overlap 1.085221143 13220810 2.352030948 13220810 4.43862069 13220810 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 X_13229149_13229627 X 13229149 13229627 CG1673 CG1673 1203 1.633225458 13229259 1.934235977 13229478 1.616551724 13229478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_13237785_13238066 X 13237785 13238066 CG1681 CG1681 627 2.44768069 13237896 2.624758221 13237896 3.884137931 13237896 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_13247049_13247290 X 13247049 13247290 CG1716 CG1716 TSS overlap 1.881337648 13247054 1.581237911 13247054 2.288275862 13247054 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_13264342_13264732 X 13264342 13264732 CG32635 CG32635 15111 2.489751888 13264562 6.525145068 13264562 9.849655172 13264562 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13267714_13268304 X 13267714 13268304 CG32635 CG32635 11539 1.186623517 13267823 2.735976789 13268169 3.868965517 13268169 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_13269870_13270074 X 13269870 13270074 CG32635 CG32635 9769 0.555555556 13269930 1.829787234 13269930 2.460689655 13269930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13270890_13271176 X 13270890 13271176 CG32635 CG32635 8667 1.235167206 13271006 2.205996132 13271006 2.393103448 13271006 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_13272418_13273226 X 13272418 13273226 CG32635 CG32635 6617 2.364617044 13272776 5.791102515 13272776 8.402758621 13272776 1 0 1 0 0 0 4 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 X_13382427_13382692 X 13382427 13382692 CG15757 CG15757 4847 2.059331176 13382522 4.664410058 13382522 6.913103448 13382522 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13450458_13450733 X 13450458 13450733 CG12175 tth 167 3.725997843 13450568 2.082205029 13450568 3.457931034 13450568 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13458514_13459113 X 13458514 13459113 CG11172 NFAT TSS overlap 2.014023732 13458962 2.124758221 13458962 2.682758621 13458686 0 0 0 0 0 0 2 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 X_13513751_13514689 X 13513751 13514689 CG12177 CG12177 TSS overlap 4.11218986 13514251 10.2040619 13514251 11.00827586 13514251 1 0 1 1 0 1 "Levine lab, unpublished" 0 0 0 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 X_13573614_13573748 X 13573614 13573748 CG10988 l(1)dd4 transcript overlap 1.955771305 13573651 2.088974855 13573651 2.689655172 13573651 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_13588262_13588501 X 13588262 13588501 CG10990 CG10990 transcript overlap 1.046386192 13588335 1.938104449 13588335 0.84137931 13588335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13828478_13829840 X 13828478 13829840 CG18319 ben 451 1.637540453 13829074 5.254352031 13828752 10.82758621 13828752 0 1 1 0 0 0 1 0 0 0 0 0 7 4 1 0 0 0 1 0 0 0 0 0 X_13863446_13863770 X 13863446 13863770 CR32607 tRNA:S7:12Ed 3862 2.921251348 13863601 1.936170213 13863601 2.706206897 13863601 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_13871932_13872202 X 13871932 13872202 CG33247 Ste:CG33247 9200 2.979503776 13872031 1.818181818 13872031 2.394482759 13872031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_14460856_14461863 X 14460856 14461863 CG18657 NetA transcript overlap 1.525350593 14461216 2.132495164 14460961 3.157241379 14460961 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_14463185_14464085 X 14463185 14464085 CG18657 NetA transcript overlap 1.713052859 14463917 2.79787234 14463917 4.457931034 14463917 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_14483279_14483873 X 14483279 14483873 CG18657 NetA transcript overlap 2.502696872 14483374 2.86073501 14483703 3.139310345 14483703 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 0 X_14484639_14485439 X 14484639 14485439 CG18657 NetA transcript overlap 1.752966559 14484753 1.791102515 14484753 2.642758621 14484753 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 X_14508419_14508699 X 14508419 14508699 CG5321 CG5321 4842 1.820927724 14508529 3.164410058 14508529 5.111724138 14508529 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_14516251_14516528 X 14516251 14516528 CG5321 CG5321 2710 2.626752967 14516359 2.408123791 14516359 3.215172414 14516359 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_14577471_14577770 X 14577471 14577770 CG10521 NetB transcript overlap 2.084142395 14577581 3.271760155 14577581 3.04137931 14577581 0 0 0 0 0 0 0 0 0 0 0 0 2 2 2 2 1 1 0 0 0 0 0 0 X_14671866_14672077 X 14671866 14672077 CG14407 CG14407 transcript overlap 1.265372168 14671974 1.208897485 14671974 1.267586207 14671974 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_14820682_14821223 X 14820682 14821223 CG10952 eag transcript overlap 1.325782093 14821071 1.615087041 14820791 2.482758621 14821071 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_14853226_14853785 X 14853226 14853785 CG32592 hiw transcript overlap 1.472491909 14853336 2.96131528 14853616 3.805517241 14853616 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 X_14861955_14862492 X 14861955 14862492 CG32594 CG32592 CG32594 hiw transcript overlap 2.045307443 14862063 2.225338491 14862336 2.046896552 14862063 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_14863799_14864076 X 14863799 14864076 CG32594 CG32592 CG32594 hiw transcript overlap 1.321467098 14863909 1.834622824 14863909 2.473103448 14863909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 X_14977329_14977581 X 14977329 14977581 CG9095 CG9095 transcript overlap 1.12837109 14977431 1.171179884 14977431 2.569655172 14977431 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_15154198_15154436 X 15154198 15154436 CG6146 Top1 transcript overlap 2.01618123 15154282 1.6827853 15154282 1.957241379 15154282 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_15162120_15162664 X 15162120 15162664 CG6157 dah TSS overlap 1.594390507 15162495 1.976789168 15162495 3.172413793 15162495 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 X_15189479_15190020 X 15189479 15190020 CG9151 acj6 transcript overlap 2.833872708 15189570 2.12959381 15189570 3.03862069 15189570 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_15208171_15208707 X 15208171 15208707 CG9151 acj6 transcript overlap 1.321467098 15208281 2.596711799 15208281 3.408275862 15208281 0 0 0 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 2 0 0 0 0 0 X_15270380_15271267 X 15270380 15271267 CG18210 CG18210 transcript overlap 1.961165049 15271031 2.984526112 15271031 2.993103448 15271031 0 0 0 0 0 0 1 0 0 0 0 0 5 2 1 1 0 0 2 1 0 0 0 0 X_15283346_15283604 X 15283346 15283604 CG9195 Scamp transcript overlap 4.453074434 15283454 2.185686654 15283454 1.4 15283454 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 X_15287204_15287551 X 15287204 15287551 CG11655 CG11655 TSS overlap 1.314994606 15287311 1.821083172 15287451 3.928275862 15287451 0 0 0 0 0 0 3 2 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_15336938_15337201 X 15336938 15337201 CG33206 l(1)G0168 transcript overlap 0.803667745 15337032 1.657640232 15337032 3.006896552 15337032 0 0 0 0 0 0 3 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_15383944_15384495 X 15383944 15384495 CG7860 CG7860 18435 1.524271845 15384050 2.02417795 15384050 2.844137931 15384050 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 X_15399969_15400258 X 15399969 15400258 CG32584 CG32584 transcript overlap 1.0798274 15400079 1.928433269 15400079 2.6 15400079 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_15417832_15418112 X 15417832 15418112 CG8097 CG8097 transcript overlap 0.862998921 15417942 2.113152805 15417942 1.395862069 15417942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_15426970_15427241 X 15426970 15427241 CG9220 CG9220 2105 1.270765912 15427071 1.96131528 15427071 2.455172414 15427071 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_15428017_15428519 X 15428017 15428519 CG9220 CG9220 3152 3.415318231 15428127 4.115087041 15428349 6.223448276 15428127 1 0 1 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_15442036_15442625 X 15442036 15442625 CG9224 sog transcript overlap 1.414239482 15442455 2.094777563 15442455 3.070344828 15442455 0 0 0 0 0 1 "Francois et al., 1994; Markstein et al., 2004" 1 1 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 X_15458274_15459269 X 15458274 15459269 CG9224 sog transcript overlap 4.885652643 15458875 9.323984526 15458875 14.02896552 15458875 1 0 1 1 0 1 "Francois et al., 1994; Markstein et al., 2004" 0 0 0 0 0 0 0 0 0 0 0 0 4 3 2 1 1 1 X_15480295_15481751 X 15480295 15481751 CG8117 CG8117 2067 8.235167206 15480699 16.40618956 15480699 18.33931034 15480699 1 0 1 0 0 0 1 0 0 0 0 0 2 2 1 1 0 0 5 4 3 1 1 0 X_15494396_15494956 X 15494396 15494956 CG8119 CG8119 1566 1.828478964 15494506 2.575435203 15494506 5.87862069 15494506 0 1 1 0 0 0 3 2 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_15513720_15514792 X 15513720 15514792 CG12708 CG12708 4282 2.464940669 15514101 4.112185687 15514101 5.911724138 15514101 1 0 1 0 0 0 3 2 0 0 0 0 4 2 0 0 0 0 4 0 0 0 0 0 X_15518333_15518887 X 15518333 15518887 CG15599 CG15599 2865 1.183387271 15518440 2.194390716 15518440 4.386206897 15518440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_15567897_15568223 X 15567897 15568223 CG8198 l(1)G0136 TSS overlap 5.035598706 15567987 2.026112186 15567987 2.594482759 15567987 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_15594589_15595263 X 15594589 15595263 CG8288 CG8948 mRpL3 Graf TSS overlap 4.514563107 15594612 2.938104449 15594884 4.135172414 15594773 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_15596401_15596675 X 15596401 15596675 CG17209 CG17209 265 1.091693635 15596505 2.136363636 15596505 2.675862069 15596505 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_15619688_15619867 X 15619688 15619867 CG8470 mRpS30 141 2.578209277 15619697 1.854932302 15619697 1.205517241 15619697 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_15622759_15623109 X 15622759 15623109 CG8497 Rhp TSS overlap 1.640776699 15622799 1.941005803 15622939 2.612413793 15622939 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_15668554_15668911 X 15668554 15668911 CG9012 Chc transcript overlap 1.494066882 15668734 1.757253385 15668734 2.762758621 15668594 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_15669376_15669813 X 15669376 15669813 CG9012 CG32582 Chc CG32582 TSS overlap 1.458468177 15669649 2.080270793 15669502 3.597241379 15669502 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_15826615_15827024 X 15826615 15827024 CG8933 exd transcript overlap 1.404530744 15826645 2.783365571 15826764 3.950344828 15826764 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_15934522_15935058 X 15934522 15935058 CG9216 CG9216 transcript overlap 1.500539374 15934888 3.034816248 15934608 3.653793103 15934608 0 0 0 0 0 0 1 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 X_16037296_16038090 X 16037296 16038090 CG9908 disco 12581 1.948220065 16037645 3.877176015 16037406 5.408275862 16037406 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_16038698_16038944 X 16038698 16038944 CG9908 disco 11727 1.454153182 16038784 1.935203095 16038784 2.226206897 16038784 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16055290_16055525 X 16055290 16055525 CG9908 disco 4619 0.964401294 16055376 1.929400387 16055376 2.340689655 16055376 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16070229_16070527 X 16070229 16070527 CR32914 snRNA:U5:14B 17527 1.201725998 16070357 2.366537718 16070357 5.776551724 16070357 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_16075614_16076434 X 16075614 16076434 CR32914 snRNA:U5:14B 11620 2.269687163 16076001 3.534816248 16076001 6.933793103 16076001 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_16088525_16089036 X 16088525 16089036 CR32913 snRNA:U2:14B TSS overlap 2.094929881 16088923 1.502901354 16088643 2.860689655 16088643 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_16092820_16093311 X 16092820 16093311 CR32913 snRNA:U2:14B 4211 1.160733549 16092929 1.887814313 16092929 3.362758621 16093157 0 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 X_16097611_16098169 X 16097611 16098169 CG12507 CG12507 2232 1.343042071 16097999 3.098646035 16097719 5.126896552 16097719 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_16109422_16109772 X 16109422 16109772 CG13956 kat80 transcript overlap 1.155339806 16109532 2.14410058 16109532 1.733793103 16109532 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 X_16153136_16153928 X 16153136 16153928 CG9916 Cyp1 transcript overlap 1.859762675 16153246 2.512572534 16153246 2.942068966 16153526 0 0 0 0 0 0 2 1 1 0 0 0 6 6 3 0 0 0 0 0 0 0 0 0 X_16255401_16256479 X 16255401 16256479 CG9968 Anxb11 TSS overlap 1.747572816 16256304 3.332688588 16256175 5.548965517 16256047 0 1 1 0 0 0 2 0 0 0 0 0 3 2 2 2 0 0 0 0 0 0 0 0 X_16260479_16261252 X 16260479 16261252 CG32575 hang transcript overlap 1.404530744 16261082 2.073500967 16261082 3.387586207 16261082 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16427592_16428068 X 16427592 16428068 CG4443 crl TSS overlap 1.017259978 16427618 2.065764023 16427898 3.350344828 16427898 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16432193_16432675 X 16432193 16432675 CG9784 CG9784 TSS overlap 2.030204962 16432505 2.067698259 16432350 2.859310345 16432350 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_16471320_16471440 X 16471320 16471440 CG9774 rok TSS overlap 1.785329018 16471353 1.681818182 16471353 2.635862069 16471353 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_16478018_16479407 X 16478018 16479407 CG4521 mthl1 transcript overlap 1.860841424 16478646 3.704061896 16478646 4.582068966 16478646 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_16489783_16490061 X 16489783 16490061 CG18572 r transcript overlap 1.487594391 16489893 2.264990329 16489893 1.976551724 16489893 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_16501800_16502322 X 16501800 16502322 CG18572 r transcript overlap 1.156418554 16501905 2.364603482 16502158 3.724137931 16502158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16585231_16585389 X 16585231 16585389 CG9634 CG9634 transcript overlap 1.142394822 16585308 1.970019342 16585308 2.310344828 16585308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16608363_16609400 X 16608363 16609400 CG9623 if transcript overlap 4.705501618 16609230 6.977756286 16609230 6.804137931 16609230 1 0 1 0 0 0 1 1 1 1 0 0 3 2 2 1 0 0 2 0 0 0 0 0 X_16627393_16627867 X 16627393 16627867 CG4768 CG4768 transcript overlap 2.955771305 16627499 6.584139265 16627499 12.91448276 16627499 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_16777998_16778694 X 16777998 16778694 CG13001 CG13001 1199 0.933117584 16778248 3.749516441 16778248 5.692413793 16778248 0 1 1 0 0 0 2 2 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_16925096_16925564 X 16925096 16925564 CG16700 CG16700 227 1.434735707 16925206 3.462282398 16925206 5.136551724 16925206 0 1 1 0 0 0 1 1 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 X_16945382_16945764 X 16945382 16945764 CG5004 CG5004 transcript overlap 1.526429342 16945408 2.500967118 16945594 3.075862069 16945408 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_16958278_16959385 X 16958278 16959385 CG5004 CG5004 transcript overlap 3.207119741 16958668 6.348162476 16958668 6.48 16958668 1 0 1 0 0 0 3 0 0 0 0 0 7 1 1 0 0 0 1 0 0 0 0 0 X_17011899_17013045 X 17011899 17013045 CG5055 baz transcript overlap 1.659115426 17012268 6.647969052 17012658 11.72965517 17012658 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_17083363_17083503 X 17083363 17083503 CG12996 CG8675 CG12996 CG8675 TSS overlap 1.875943905 17083403 2.296905222 17083403 3.095172414 17083403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_17148283_17148663 X 17148283 17148663 CG5488 B-H2 TSS overlap 1.101402373 17148333 2.486460348 17148333 5.689655172 17148333 0 1 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_17174843_17175130 X 17174843 17175130 CG5488 B-H2 26325 1.608414239 17174953 1.718568665 17174953 2.466206897 17174953 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 X_17202027_17202587 X 17202027 17202587 CG5529 B-H1 28851 0.982740022 17202417 1.691489362 17202137 2.715862069 17202417 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_17231270_17231469 X 17231270 17231469 CG5529 B-H1 TSS overlap 1.394822006 17231374 1.29303675 17231374 1.499310345 17231374 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 X_17257315_17258115 X 17257315 17258115 CG5613 CG5613 TSS overlap 1.584681769 17257563 3.007736944 17257563 4.325517241 17257707 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_17316597_17316824 X 17316597 17316824 CG8557 CG8557 transcript overlap 1.337648328 17316667 2.294003868 17316667 1.962758621 17316667 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_17338221_17338988 X 17338221 17338988 CG8557 CG8557 14969 1.269687163 17338331 3.5 17338541 2.169655172 17338541 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 X_17342180_17343470 X 17342180 17343470 CG8557 CG8557 18928 2.486515642 17342284 3.205029014 17342788 5.324137931 17342788 1 0 1 0 0 0 4 2 0 0 0 0 7 2 1 1 1 1 0 0 0 0 0 0 X_17405086_17405303 X 17405086 17405303 CG8527 ppk23 2014 1.143473571 17405167 1.323017408 17405167 2.526896552 17405167 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_17433530_17433740 X 17433530 17433740 CG5675 X11L TSS overlap 1.600862999 17433570 1.824951644 17433570 3.75862069 17433570 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_17485409_17486408 X 17485409 17486408 CG32555 RhoGAPp190 transcript overlap 2.376483279 17486030 4.915860735 17485751 7.995862069 17485751 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_17543803_17544086 X 17543803 17544086 CG8173 CG8173 208 2.124056095 17543913 2.335589942 17543913 3.612413793 17543913 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_17545811_17546900 X 17545811 17546900 CG32560 CG32560 transcript overlap 2.337648328 17546169 5.226305609 17546169 8.194482759 17546169 1 0 1 0 0 0 2 1 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 X_17577084_17577572 X 17577084 17577572 CG32560 CG32560 transcript overlap 1.670981661 17577405 2.530947776 17577194 2.457931034 17577194 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_17623669_17624448 X 17623669 17624448 CG6352 OdsH 539 1.716289105 17624278 2.843326886 17624018 5.315862069 17624278 0 1 1 0 0 0 1 1 1 1 1 0 3 1 1 1 0 0 2 0 0 0 0 0 X_17636095_17636611 X 17636095 17636611 CG6352 OdsH transcript overlap 1.195253506 17636181 2.451644101 17636181 4.576551724 17636442 0 0 0 0 0 0 3 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 X_17653580_17654206 X 17653580 17654206 CG12986 CG12986 28 8.511326861 17654037 3.455512573 17654037 4.362758621 17654037 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 3 2 1 0 0 0 X_17662660_17664954 X 17662660 17664954 CG6398 CG6398 TSS overlap 2.885652643 17663543 3.917794971 17663543 6.943448276 17663543 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 4 1 1 0 0 0 X_17665990_17666491 X 17665990 17666491 CG6398 CG6398 transcript overlap 1.693635383 17666319 2.967117988 17666099 4.437241379 17666099 0 0 0 0 0 0 2 2 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 X_17673347_17673875 X 17673347 17673875 CG6398 CG6398 transcript overlap 1.987055016 17673705 1.320116054 17673705 2.616551724 17673425 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_17707472_17708029 X 17707472 17708029 CG7826 mnb transcript overlap 1.141316073 17707582 1.764990329 17707582 3.302068966 17707582 0 0 0 0 0 0 2 2 2 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_17716858_17717138 X 17716858 17717138 CG7826 mnb transcript overlap 1.668824164 17716968 2.617021277 17716968 2.495172414 17716968 0 0 0 0 0 0 2 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_17926550_17927111 X 17926550 17927111 CG7122 RhoGAP16F TSS overlap 1.134843581 17927011 3.426499033 17926871 5.420689655 17926871 0 1 1 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18041885_18043404 X 18041885 18043404 CG15064 Him TSS overlap 1.499460626 18042196 3.258220503 18042196 4.649655172 18042196 0 0 0 0 0 0 3 2 1 1 0 0 5 4 3 2 0 0 1 0 0 0 0 0 X_18130927_18131487 X 18130927 18131487 CG15061 CG15061 4411 0.951456311 18131037 1.879110251 18131037 2.791724138 18131037 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_18134278_18135502 X 18134278 18135502 CG5993 os 6260 1.337648328 18134656 2.892649903 18134790 4.44 18134656 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_18137557_18139166 X 18137557 18139166 CG5993 os 2596 1.813376483 18138207 2.567698259 18138708 4.07862069 18138708 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 X_18142979_18143757 X 18142979 18143757 CG5993 os 1217 1.806903991 18143360 2.393617021 18143360 3.365517241 18143360 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_18144518_18145653 X 18144518 18145653 CG5993 os 2756 1.40021575 18145524 3.98549323 18145424 5.368275862 18145524 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18146422_18147233 X 18146422 18147233 CG5993 os 4660 1.950377562 18146794 4.196324952 18146794 6.72137931 18146794 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18149876_18150057 X 18149876 18150057 CG6023 CG6023 transcript overlap 1.060409924 18149893 1.892649903 18149893 3.211034483 18149893 0 0 0 0 0 0 1 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 X_18251512_18251792 X 18251512 18251792 CG15056 CG15056 2062 1.393743258 18251622 1.936170213 18251622 3.190344828 18251622 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18333579_18333903 X 18333579 18333903 CG6394 GalNAc-T2 TSS overlap 1.226537217 18333803 2.112185687 18333663 3.364137931 18333663 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18368197_18368776 X 18368197 18368776 CG6500 Bx TSS overlap 1.613807983 18368467 1.921663443 18368304 2.91862069 18368304 0 0 0 0 0 0 3 3 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_18459250_18459767 X 18459250 18459767 CG6531 wgn transcript overlap 1.563106796 18459626 2.463249516 18459626 3.946206897 18459361 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 X_18461108_18461659 X 18461108 18461659 CG6531 wgn transcript overlap 0.932038835 18461209 2.528046422 18461209 2.67862069 18461209 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_18466514_18467264 X 18466514 18467264 CG6531 wgn transcript overlap 1.182308522 18466898 3.032882012 18466898 3.391724138 18466898 0 0 0 0 0 0 2 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 X_18501982_18502569 X 18501982 18502569 CG6696 CG6696 5892 1.156418554 18502363 2 18502363 2.969655172 18502363 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_18518319_18520273 X 18518319 18520273 CG6578 phm TSS overlap 4.774541532 18518976 12.33558994 18518696 22.24 18518696 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 3 2 1 0 0 0 X_18529387_18529936 X 18529387 18529936 CG6816 Cyp18a1 2705 1.078748652 18529769 2.787234043 18529497 4.393103448 18529497 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_18600034_18600587 X 18600034 18600587 CG32540 CCKLR-17D3 transcript overlap 1.306364617 18600144 3.617988395 18600144 5.044137931 18600144 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_18630930_18631209 X 18630930 18631209 CG7001 CG7088 Pk17E bnb transcript overlap 1.581445523 18631040 1.176982592 18631040 2.216551724 18631040 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_18633112_18633890 X 18633112 18633890 CG7001 Pk17E transcript overlap 1.340884574 18633502 3.978723404 18633502 5.257931034 18633502 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_18668741_18669457 X 18668741 18669457 CG7103 Pvf1 transcript overlap 1.201725998 18668850 2.055125725 18669277 2.795862069 18669277 0 0 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_18671139_18671699 X 18671139 18671699 CG7103 Pvf1 transcript overlap 1.07227616 18671529 2.311411992 18671529 3.660689655 18671529 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_18701959_18702490 X 18701959 18702490 CG17757 CG17757 2582 2.738942826 18702345 5.576402321 18702345 9.008275862 18702345 1 0 1 0 0 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_18744267_18744786 X 18744267 18744786 CG7378 CG7378 9920 1.914778857 18744375 2.650870406 18744617 3.340689655 18744375 0 0 0 0 0 0 0 0 0 0 0 0 3 2 2 0 0 0 0 0 0 0 0 0 X_18800802_18801690 X 18800802 18801690 CG32541 CG32541 transcript overlap 1.279395901 18801520 3.938104449 18801197 2.783448276 18801197 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 X_18812375_18812919 X 18812375 18812919 CG32541 CG32541 transcript overlap 1.717367853 18812749 2.69729207 18812749 3.928275862 18812749 0 0 0 0 0 0 5 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 X_18865432_18865703 X 18865432 18865703 CG14189 CG14189 18939 0.781014024 18865533 1.444874275 18865533 2.645517241 18865533 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_18987399_18987937 X 18987399 18987937 CG7481 CG7502 RhoGAP18B CG7502 transcript overlap 1.009708738 18987487 3.082205029 18987767 6.095172414 18987767 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_19013644_19014369 X 19013644 19014369 CG7556 CG7453 CG7556 CG7453 TSS overlap 4.673139159 19014081 3.675048356 19013964 5.303448276 19014081 1 0 1 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_19054341_19055916 X 19054341 19055916 CG7884 CG7884 TSS overlap 1.837108954 19054620 6.599613153 19055016 8.211034483 19055016 0 1 1 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_19056413_19056633 X 19056413 19056633 CG7884 CG7884 transcript overlap 1.018338727 19056491 1.686653772 19056491 2.433103448 19056491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_19132539_19133739 X 19132539 19133739 CR33711 snmRNA:763 2071 4.825242718 19133117 2.230174081 19133117 2.867586207 19133597 0 0 0 0 0 0 4 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_19155731_19157094 X 19155731 19157094 CG8062 CG8062 TSS overlap 1.363538296 19156094 2.944874275 19156944 4.622068966 19156944 0 0 0 0 0 0 6 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_19187078_19187218 X 19187078 19187218 CG12199 kek5 TSS overlap 1.907227616 19187118 1.82205029 19187118 2.077241379 19187118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_19195188_19195682 X 19195188 19195682 CG12199 kek5 transcript overlap 1.394822006 19195512 2.087040619 19195512 2.824827586 19195512 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 X_19225202_19225746 X 19225202 19225746 CG12199 kek5 transcript overlap 0.964401294 19225578 1.805609284 19225578 3.168275862 19225312 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_19267718_19268200 X 19267718 19268200 CG12199 kek5 transcript overlap 0.856526429 19268058 3.406189555 19267806 2.797241379 19267806 0 0 0 0 0 0 1 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 X_19328315_19329058 X 19328315 19329058 CG12204 CG12204 TSS overlap 2.402373247 19328354 2.161508704 19328730 3.364137931 19328354 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_19341360_19341827 X 19341360 19341827 CG3400 Pfrx transcript overlap 1.265372168 19341377 2.250483559 19341657 3.605517241 19341657 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_19355790_19355929 X 19355790 19355929 CG33525 CG33525 TSS overlap 2.464940669 19355830 2.053191489 19355830 1.451034483 19355830 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_19452071_19452324 X 19452071 19452324 CG12788 CG17767 CG12788 Tim9b transcript overlap 1.180151025 19452181 1.378143133 19452181 2.223448276 19452181 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_19465265_19465809 X 19465265 19465809 CG12238 l(1)G0084 transcript overlap 1.801510248 19465639 2.223404255 19465360 4.220689655 19465639 0 0 0 0 0 0 6 3 2 2 2 1 5 5 0 0 0 0 0 0 0 0 0 0 X_19472196_19473322 X 19472196 19473322 CG12238 CG14213 l(1)G0084 CG14213 TSS overlap 5.099244876 19472376 2.324951644 19472755 3.88 19472376 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 X_19516977_19517542 X 19516977 19517542 CG14226 dome TSS overlap 1.723840345 19517443 2.547388781 19517087 4.514482759 19517087 0 0 0 0 0 0 2 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 X_19550706_19550991 X 19550706 19550991 CG14233 meso18E 3728 0.756202805 19550806 2.001934236 19550806 1.176551724 19550806 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_19552043_19552541 X 19552043 19552541 CG12531 CG12531 3436 1.586839266 19552377 2.651837524 19552127 3.897931034 19552127 0 0 0 0 0 0 2 1 1 1 0 0 4 2 2 2 0 0 0 0 0 0 0 0 X_19587885_19588560 X 19587885 19588560 CG12703 CG12703 transcript overlap 1.30420712 19587989 3.580270793 19588269 7.228965517 19588269 0 1 1 0 0 0 2 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_19598863_19600465 X 19598863 19600465 CG12702 CG12702 2603 1.553398058 19599720 4.389748549 19599720 5.755862069 19599720 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 X_19606238_19606381 X 19606238 19606381 CG12702 CG12702 9978 1.177993528 19606309 2.276595745 19606309 2.411034483 19606309 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_19607380_19610159 X 19607380 19610159 CG12701 CG12701 6706 4.386192017 19609728 2.939071567 19608886 2.711724138 19608886 0 0 0 0 0 0 4 1 1 0 0 0 12 8 3 0 0 0 0 0 0 0 0 0 X_19617139_19617656 X 19617139 19617656 CG12701 CG12701 274 2.388349515 19617249 2.166344294 19617488 2.365517241 19617488 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_19619882_19621034 X 19619882 19621034 CG12701 CG12701 3017 1.268608414 19620266 3.240812379 19620266 4.544827586 19620878 0 0 0 0 0 0 3 0 0 0 0 0 6 0 0 0 0 0 2 0 0 0 0 0 X_19676179_19676984 X 19676179 19676984 CG11940 CG11940 transcript overlap 1.364617044 19676534 2.301740812 19676534 3.331034483 19676534 0 0 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 X_19722978_19723226 X 19722978 19723226 CG11937 CG32529 amn CG32529 transcript overlap 1.420711974 19723056 1.557059961 19723056 1.617931034 19723056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_19731212_19731531 X 19731212 19731531 CG32529 CG32529 transcript overlap 3.41639698 19731357 1.150870406 19731357 2.107586207 19731357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_19980026_19980276 X 19980026 19980276 CG9572 CG9572 1792 0.891046386 19980115 1.308510638 19980115 2.732413793 19980115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_20041535_20042237 X 20041535 20042237 CG18000 sw transcript overlap 1.154261057 20041648 2.387814313 20041787 5.64137931 20041787 0 1 1 0 0 0 4 3 0 0 0 0 2 2 2 0 0 0 0 0 0 0 0 0 X_20095764_20096324 X 20095764 20096324 CG17063 inx6 15589 1.048543689 20095874 1.930367505 20096154 3.222068966 20096154 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_20100830_20101592 X 20100830 20101592 CG17063 inx6 20655 1.286947141 20100936 1.492263056 20100936 2.067586207 20101164 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 X_20320532_20320679 X 20320532 20320679 CG1812 CG1812 1544 1.58360302 20320554 1.584139265 20320554 1.953103448 20320554 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_20351373_20351718 X 20351373 20351718 CG15455 CG15455 TSS overlap 1.649406688 20351419 1.778529981 20351419 2.984827586 20351419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_20473322_20474435 X 20473322 20474435 CG1835 CG1835 4563 2.296655879 20473486 2.174081238 20473486 3.337931034 20473486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 X_20474706_20474986 X 20474706 20474986 CG1835 CG1835 4012 1.006472492 20474816 1.550290135 20474816 2.00137931 20474816 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_20488707_20489264 X 20488707 20489264 CG1338 hydra 1107 0.997842503 20488817 1.938104449 20488817 2.542068966 20488817 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 X_20490377_20491163 X 20490377 20491163 CG1338 hydra 2777 1.32038835 20490795 2.482591876 20490795 3.495172414 20490795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 X_20502036_20503071 X 20502036 20503071 CG1849 run 2046 1.415318231 20502146 2.82688588 20502626 6.353103448 20502626 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 X_20504075_20505996 X 20504075 20505996 CG1849 run TSS overlap 2.67206041 20504619 4.090909091 20504619 6.100689655 20504619 1 0 1 0 0 0 2 2 2 2 2 0 0 0 0 0 0 0 2 1 1 1 1 1 X_20508805_20509365 X 20508805 20509365 CG1849 run 3688 0.980582524 20508915 2.642166344 20508915 3.775172414 20508915 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_20527810_20528896 X 20527810 20528896 CG1324 CG1324 17740 1.474649407 20528200 4.621856867 20528450 6.551724138 20528450 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 X_20535031_20535856 X 20535031 20535856 CG1324 CG1324 10780 1.296655879 20535383 2.484526112 20535383 3.64 20535383 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_20550309_20550869 X 20550309 20550869 CG1324 CG1324 3673 1.471413161 20550419 2.672147002 20550419 4.124137931 20550419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_20555158_20555427 X 20555158 20555427 CG15452 CG15452 1198 1.513484358 20555261 3.284332689 20555261 5.572413793 20555261 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_20557589_20557831 X 20557589 20557831 CG15452 CG15452 964 1.086299892 20557661 2.040618956 20557661 3.395862069 20557661 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 X_20669366_20669901 X 20669366 20669901 CG1314 CG1314 10172 1.007551241 20669755 1.763056093 20669476 3.03862069 20669476 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 X_20838324_20839087 X 20838324 20839087 CG1532 CG1532 TSS overlap 1.558791802 20838985 1.868471954 20838705 2.755862069 20838705 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 X_20842156_20842996 X 20842156 20842996 CG1529 CG1529 TSS overlap 1.524271845 20842546 3.549323017 20842546 7.252413793 20842546 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 X_20855827_20856018 X 20855827 20856018 CG1753 CG1753 transcript overlap 1.210355987 20855867 2.530947776 20855867 3.976551724 20855867 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_20927599_20927940 X 20927599 20927940 CG15445 CG15445 TSS overlap 2.661272923 20927840 2.19245648 20927840 1.612413793 20927840 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_21131895_21132175 X 21131895 21132175 CG1696 l(1)G0269 transcript overlap 1.022653722 21132005 1.476789168 21132005 2.51862069 21132005 0 0 0 0 0 0 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_21154223_21154487 X 21154223 21154487 CG1484 fliI transcript overlap 0.992448759 21154324 3.498065764 21154324 5.124137931 21154324 0 1 1 0 0 0 1 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 X_21159435_21159971 X 21159435 21159971 CG1685 pen transcript overlap 1.585760518 21159802 2.320116054 21159802 2.899310345 21159802 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 X_21180303_21180863 X 21180303 21180863 CG1414 CG1410 bbx waw transcript overlap 0.921251348 21180693 3.012572534 21180413 5.664827586 21180413 0 1 1 0 0 0 3 3 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_21194071_21194644 X 21194071 21194644 CG1417 slgA transcript overlap 1.331175836 21194461 3.616054159 21194461 6.24137931 21194181 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 X_21199663_21199978 X 21199663 21199978 CG1424 mst TSS overlap 1.588996764 21199691 2.135396518 21199691 3.972413793 21199691 0 0 0 0 0 0 2 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_21415542_21415971 X 21415542 21415971 CG14476 CG14476 TSS overlap 1.685005394 21415733 1.931334623 21415733 2.715862069 21415733 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 X_21659635_21660165 X 21659635 21660165 CG14619 CG14619 transcript overlap 1.617044229 21659745 3.470019342 21660025 5.336551724 21660025 0 1 1 0 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 X_21787833_21788334 X 21787833 21788334 CG32499 CG32499 transcript overlap 1.309600863 21788174 1.699226306 21788174 2.411034483 21788174 0 0 0 0 0 0 3 1 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 X_21792049_21792324 X 21792049 21792324 CG32499 CG32499 transcript overlap 1.092772384 21792159 1.902321083 21792159 3.40137931 21792159 0 0 0 0 0 0 2 2 1 0 0 0 1 1 1 0 0 0 1 1 1 1 1 0 X_22039681_22040474 X 22039681 22040474 CG9559 fog transcript overlap 1.46386192 22040307 3.863636364 22040069 6.246896552 22040069 0 1 1 0 0 1 "Costa et al., 1994" 2 1 1 1 1 0 2 1 1 1 1 0 0 0 0 0 0 0 X_22165248_22165528 X 22165248 22165528 CG9559 fog 106665 1.670981661 22165358 2.523210832 22165358 3.863448276 22165358 0 0 0 0 0 1 "Costa et al., 1994" 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 X_22168095_22168650 X 22168095 22168650 CG9559 fog 109512 3.699029126 22168485 3.825918762 22168485 3.969655172 22168485 0 0 0 0 0 1 "Costa et al., 1994" 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0