References

Aparicio OM, in Current Protocols in Molecular Biology. F. M. Ausubel, et al., Eds. (John Wiley and Sons, Inc., New York, 1999) pp. 21.3.1-21.3.12.

Araya, Z., W. Tang, et al. (2003). "Hormonal regulation of the human sterol 27-hydroxylase gene CYP27A1." Biochem J 372(Pt 2): 529-34.

Bailey T, Elkan C (1994). Proceeding of the Second International Conference on Intelligent Systems for Molecular Biology (AAAI Press. Menlo Park, California). 28-36.

Bar-Joseph Z, Gifford DK, Jaakkola TS (2001). Fast optimal leaf ordering for hierarchical clustering. Bioinformatics 17 Suppl 1, S22-9.

Bar-Joseph Z, Gerber G, Gifford DK, Jaakkola T, Simon I (2002). A new approach to analyzing gene expression time series data. Proceedings of The Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB), 39-48.

Gannon, M., M. K. Ray, et al. (2000). "Persistent expression of HNF6 in islet endocrine cells causes disrupted islet architecture and loss of beta cell function." Development 127(13): 2883-95.

Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD,Kidd MJ, King AM, Meyer MR, Slade D, Lum PY, Stepaniants SB, Shoemaker DD, Gachotte D, Chakraburtty K,Simon J, Bard M, Friend SH. (2000). Functional discovery via a compendium of expression profiles. Cell 102, 109-26.

Kardassis, D., K. Pardali, et al. (2000). "SMAD proteins transactivate the human ApoCIII promoter by interacting physically and functionally with hepatocyte nuclear factor 4." J Biol Chem 275(52): 41405-14.

Landry, C., F. Clotman, et al. (1997). "HNF-6 is expressed in endoderm derivatives and nervous system of the mouse embryo and participates to the cross-regulatory network of liver-enriched transcription factors." Dev Biol 192(2): 247-57.

Lee, T. I., N. J. Rinaldi, et al. (2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae." Science 298: 799-804.

Lee, T. I. and R. A. Young (2000). "Transcription of eukaryotic protein-coding genes." Annu Rev Genet 34: 77-137.

Orlando V (2000). Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem Sci 25,99-104.

Rausa, F., U. Samadani, et al. (1997). "The cut-homeodomain transcriptional activator HNF-6 is coexpressed with its target gene HNF-3 beta in the developing murine liver and pancreas." Dev Biol 192(2): 228-46.

Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA (2000). Genome-wide location and function of DNA binding proteins. Science 290, 2306-9.

Simon I, Barnett J, Hannett N, Harbison CT, Rinaldi NJ, Volkert TL, Wyrick JJ, Zeitlinger J, Gifford DK, Jaakkola TS, Young RA. Serial regulation of transcriptional regulators in the yeast cell cycle. Cell 106, 697-708. (2001)

Soutoglou, E., G. Papafotiou, et al. (2000). "Transcriptional activation by hepatocyte nuclear factor-1 requires synergism between multiple coactivator proteins." J Biol Chem 275(17): 12515-20.

Soutoglou, E., B. Viollet, et al. (2001). "Transcription factor-dependent regulation of CBP and P/CAF histone acetyltransferase activity." Embo J 20(8): 1984-92.

Soutoglou, E. and I. Talianidis (2002). "Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation." Science 295(5561): 1901-4.

Vaisse, C., J. Kim, et al. (1997). "Pancreatic islet expression studies and polymorphic DNA markers in the genes encoding hepatocyte nuclear factor-3alpha, -3beta, -3gamma, -4gamma, and -6." Diabetes 46(8): 1364-7.

Wilson, M. E., Scheel, D., German, M.S. (2003) "Gene expression cascades in pancreatic development." Mechanisms of Development 120:65-80.