Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells

Mapping Transcription Factor Occupancy in Human Embryonic Stem Cells

• Growth Conditions
• Human ES Cell Quality Control
• Technology and Protocols

• Download Data
• Data Analysis
• Array Scanning and Data Extraction
• Normalization and Analysis
• Identification of Bound Regions
• Data Quality Control

This web page contains links to the individual microarray designs, raw microarray data, coordinates of the bound regions, and the names of annotated genes that are bound at the transcription start site.

Array Designs (16.6 MB)
Oligonucleotide sequences for each probe on each array.

Raw Data (? MB)
Axon GenePix Results (gpr) files containing raw data from the scan of each array, together with seqences for each oligonucleotide probe.

Table S1
Promoter Regions bound by Oct4 in ES cells
Table S2
Known Genes bound by Oct4, Sox2, Nanog, and E2F4 in ES cells
Table S3
Promoter Regions bound by Sox2 in ES cells
Table S4
Promoter Regions bound by Nanog in ES cells
Table S5
Genes co-occupied by Oct4, Sox2, and Nanog in ES cells
Table S6
Regions of the Genome bound by E2F4 in ES cells
Table S7
Gene Ontology Classifications